Genetic studies in representatives of genusRhipidomys (Rodentia, Sigmodontinae) from Brazil

Karyotypic polymorphism of five taxa of the rodent genusRhipidomys from the Brazilian Amazon and Cerrado biomes was analysed.Rhipidomys nitela Thomas, 1901 from Amazon has 2n=48, FN=68. The other species, all have 2n=44, but can be separated into two groups, one with high FNs (76, 80) and the other with low FNs (48, 52). Two cytotypes ofR. mastacalis (Lund, 1840) with high FNs were trapped in four localities of the Cerrado, showing 19 and 17 biarmed autosomes, respectively. A low FN (48) was observed inR. leucodactylus (Tschudi, 1844) in two localities of the Cerrado and FN=52 in one locality in the Cerrado and the Amazon. All taxa with 2n=44 have a medium-sized acrocentric X chromosome and a small Y.Rhipidomys nitela is different from the species with 2n=44 by presenting a heterochromatic short arm of the X chromosome. In all karyotypes analysed, the nucleolus organizer regions were located in the short arms of two to six pairs and the (T₂AG₃)_n telomeric probes hybridizedin situ in both the short and long arms of all pairs of the karyotypes.     

Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia,Cricetidae) from Central and South America

González‐Ittig, R. E., Salazar‐Bravo, J., Barquez, R. M. & Gardenal, C. N. (2010). Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia, Cricetidae) from Central and South America. —Zoologica Scripta, 39, 511–526. The genus Oligoryzomys includes several species very similar in external morphology, which has resulted in a confusing specific taxonomy. Accurate species identification is particularly important because several species of Oligoryzomys act as natural hosts of hantaviruses affecting humans. Here, we assign specific status to individuals from a wide geographical area of Argentina and Chile using sequences of the mtDNA control region. We also compare cytochrome b sequences of 14 species recognized from Central and South America to infer the phylogenetic relationships within the genus. In addition, the results were analysed using available data on chromosome numbers, and the host–parasite relationships reported for the genus Hantavirus. We confirm the geographical distribution of Oligoryzomys longicaudatus (Argentina, Chile), Oligoryzomys nigripes (Argentina, Paraguay, Brazil), Oligoryzomys chacoensis (Argentina, Bolivia, Paraguay), Oligoryzomys fornesi (Argentina, Paraguay), Oligoryzomys destructor (Argentina, Bolivia) and Oligoryzomys microtis (Bolivia, Brazil). Oligoryzomys longicaudatus is strongly related to the Oligoryzomys flavescens complex, which comprises four clades; O. nigripes is closely related to Oligoryzomys stramineus, and Oligoryzomys vegetus, to Oligoryzomys fulvescens from Central America. Oligoryzomys chacoensis, O. destructor, O. fornesi, O. longicaudatus, O. microtis, O. nigripes, O. stramineus, Oligoryzomys moojeni, Oligoryzomys rupestris, O. fulvescens and O. vegetus are confirmed as valid species, whereas O. flavescens, Oligoryzomys magellanicus, Oligoryzomys griseolus, Oligoryzomys victus, Oligoryzomys andinus and Oligoryzomys arenalis need exhaustive revision. The sister species to all the remaining entities of the genus was O. microtis, suggesting an Amazonian origin for the genus.     

Integrated analyses of chromosome, molecular and morphological variability in the Andean mice Eligmodontia puerulus and E. moreni (Rodentia, Cricetidae, Sigmodontinae)

Patterns of evolution and systematics of sigmodontine rodents are matters of continuous revision and debate. The silky mouse, Eligmodontia, is a phyllotine rodent adapted to arid environments. Chromosomal and molecular data have identified six species in this genus. Among these E. puerulus and E. moreni are sister taxa from the high Andean and lowland deserts, respectively, with large chromosomal differences and intermediate levels of molecular divergence. The purpose of our study was to quantify the degree of variability (morphological, cytogenetic, and molecular) and to analyze its evolutionary implications within, and between, these sister species in the Monte and Puna biomes of Argentina. Our results show a high variability at the chromosomal and molecular level, but low morphological differentiation among populations of E. puerulus. Diploid numbers vary from 31 to 37 due to a complex Robertsonian system, whereas cytochrome-b distances range from 0.15% to 5.75%. On the other hand, E. moreni shows high morphological differentiation between populations, but low intraspecific differentiation at the molecular (from 0.73% to 1.4%) and chromosomal level (2n = 52). Comparison of E. puerulus with E. moreni reveals high morphological and chromosomal distinction between them, but absence of molecular differentiation. Our results suggest that: (1) the high genetic variability of E. puerulus could be associated to its geographic distribution in the complex topography of the high Andean Puna; (2) the high morphological differentiation between E. moreni and E. puerulus could be the result of natural selection; and (3) molecular polyphyly between E. puerulus and E. moreni could be due to introgression or a recent split of these taxa. Finally, our results emphasize the need to integrate different datasets in the analysis of species variability and diversification, as tools for understanding their evolutionary histories.     

Effect of plant cover on seed removal by rodents in the Monte Desert (Mendoza,Argentina)

Abstract In desert areas, predation risk is one of the highest costs of foraging and is a major influence on animal behaviour. Several strategies are used by foragers for surviving and reproducing in desert areas. The foraging strategies of the small mammals of South American deserts are still poorly known. In this study, we investigated the foraging strategies of rodents of the Monte Desert in response to distance from seed sources to sheltered sites (i.e. shrubs) during two different seasons (wet and dry). We evaluated the relative rates of removal of two species of seeds (millet and sunflower) by rodents at two sites by establishing 80 seed sources, 40 in unsheltered microhabitats and 40 in sheltered microhabitats. We recorded both the number of caches and seed consumption for each source. We found that plant cover affected the foraging activity of rodents of the sand dunes in the Monte Desert because both consumption and numbers of caches constructed from sheltered seed sources were higher than those from unsheltered ones. Consumption of sunflower was higher in the wet season than it was in the dry season, when millet consumption increased. Sunflower was the preferred seed both from sheltered or unsheltered sources. We discuss the possible causes of the different foraging strategies used by rodents of the Monte Desert.     

Integrative taxonomy, systematics and distribution of the genus Eligmodontia (Rodentia, Cricetidae, Sigmodontinae) in the temperate Monte Desert of Argentina

The systematics and distribution of South American sigmodontine rodents a matter of continuous revision and debate. The silky mice, genus Eligmodontia Cuvier, 1837, are among the most specialized murid rodents endemic to South America and its diversification for desert existence is associated with the uplift of the Andes and the early development of arid landscapes. Aiming to clarify the systematics of the species of silky mice occurring in the driest portion of the temperate Monte Desert in Argentina, qualitative and quantitative external and cranial characters, cytogenetics and molecular relationships, were studied. We characterized three karyotypes of Eligmodontia; two of which are described for the first time, and allocated them to previously named species. E. moreni Thomas, 1896 (2n=52 and FN=50), E. typus Cuvier, 1837 (2n=44 and FN=44) and E. marica Thomas, 1918. The later shows the same diploid number of E. typus, but its X—chromosome is not METACENTRIC but ACROCENTRIC . A discriminant analysis of external and cranial data separates E. moreni from E. typus and E. marica. Whereas these last ones show some degree of overlap. The morphological and chromosomal differentiation of Eligmodontia is sustained by DNA distances. Phylogenetic analyses show two major clades. One formed by E. moreni, E. puerulus and E. hirtipes, sharing a high FN and a northern distribution, and THE other formed by E. typus, E. marica and E. morgani with low FN and a central-southern distribution. Two centers of diversification are proposed to explain the evolution of Eligmodontia.     

Population genetic structure of the South American species Hypochaeris lutea (Asteraceae)

The genus Hypochaeris has a recent evolutionary history caused by long‐distance dispersal in conjunction with adaptive radiation in the South American continent. Hypochaeris lutea is a perennial herb that grows mostly at altitudes of around 1000 m in cold swamps of the southern regions of Brazil. We investigated the amplified fragment length polymorphism (AFLP) in 270 individuals representing 11 Brazilian populations of H. lutea to elucidate the population genetic structure of this species. The frequencies of polymorphic loci and gene diversity ranged from 83.42% to 91.66% and from 0.26 to 0.34, respectively. Analysis of molecular variance revealed that most of the genetic variability was found within (76.67%) rather than among (23.3%) populations, agreeing with the pattern of genetic distribution within and among populations observed in other allogamous species of Hypochaeris. A Mantel test showed no correlation between genetic and geographic distances when all populations were considered. Simulations performed using a Bayesian approach consistently identified two clusters with different admixture proportions of individuals, as also revealed by a UPGMA dendrogram of populations. The pattern of genetic structure observed in H. lutea is consistent with a process of successive colonization events by long‐distance dispersal resembling the rapid and recent radiation that has been proposed to explain the origin of the South American species of Hypochaeris.     

Diversification of the climatic niche drove the recent processes of speciation in Sigmodontinae (Rodentia,Cricetidae)

Evolutionary radiations are among the most intriguing natural phenomena. Sigmodontine rodents form a megadiverse group for which doubts exist about the adaptive or non‐adaptive nature of its radiation. We analysed whether or not the rates of diversification of species of Sigmodontinae are related to the rates of diversification of the climatic niches occupied by the species. Our results show a clear association between niche diversification and speciation processes. However, this association is linked to recent and independent processes of diversification in sigmodontines, as opposed to an early link that would indicate a niche‐filling consistent with an adaptive radiation of the subfamily.     

Potential distribution of the invasive freshwater dinoflagellate Ceratium furcoides (Levander) Langhans (Dinophyta) in South America

Dinoflagellates of the genus Ceratium are predominantly found in marine environments, with a few species in inland waters. Over the last decades, the freshwater species Ceratium hirundinella and Ceratium furcoides have colonized and invaded several South American basins. The purpose of this study was to create a distribution model for the invasive dinoflagellate C. furcoides in South America in order to further investigate the basins at potential risk, as well as the environmental conditions that influence its expansion. This species is known to develop blooms due to its mobility, resistance to sedimentation, and optimized use of resources. Although nontoxic, blooms of the species cause many problems to both the natural ecosystems and water users. Potential distribution was predicted by using a maximum entropy algorithm (MaxEnt). Model was run with 101 occurrences obtained from the scientific literature, and climatic, hydrological and topographic variables. The developed model had a very good performance for the study area. The most susceptible areas identified were mainly concentrated in the basins between southeastern Brazil and northeastern Argentina. Besides already affected regions, new potentially suitable areas were identified in temperate regions of South America. The information generated here will be useful for authorities responsible for water and watershed management to monitor the spread of this species and address problems related to its establishment in new environments.     

Geographic distribution and phenetic skull variation in two close species of Graomys (Rodentia, Cricetidae, Sigmodontinae)

The interspecific differentiation of South American rodents of the genus Graomys was assayed at ecological and morphometric levels in two species. At the ecological level, niche modelling was used. At the morphometric level, the hypothesis that the size and shape of the skull vary with the geographic location was tested using geometric morphometrics by assessing the extent and spatial distribution of phenotypic skull variation within and among two species, Graomys griseoflavus and Graomys chacoensis. Our results of niche modelling indicate the spatial differentiation between the two species, with G. chacoensis inhabiting preferably the Chaco ecoregion and G. griseoflavus inhabiting mainly the Monte ecoregion. In multiple linear regressions, approximately 20% of the skull size variation is explained by latitude, altitude, and temperature seasonality. The partial least square analysis reveals strong correlation between shape and environmental variables, mainly with latitude, annual mean temperature, and annual precipitation. Discrimination between G. griseoflavus and G. chacoensis was highly reliable when using geometric morphometric tools. These results permit us to elucidate some evolutionary processes that have occurred in these species.     

A new genus and species of rodent from the Brazilian Atlantic Forest (Rodentia: Cricetidae: Sigmodontinae: Oryzomyini), with comments on oryzomyine biogeography

We describe in this paper a new genus and species of cricetid rodent from the Atlantic Forest of Brazil, one of the most endangered eco‐regions of the world. The new form displays some but not all synapomorphies of the tribe Oryzomyini, but a suite of unique characteristics is also observed. This new forest rat possesses anatomical characteristics of arboreal taxa, such as very developed plantar pads, but was collected almost exclusively in pitfall traps. Phylogenetic analyses of morphological (integument, soft tissue, cranial, and dental characters) and molecular [nuclear – Interphotoreceptor retinoid binding protein (Irbp) – and mitochondrial – cytochrome b– genes] datasets using maximum likelihood and cladistic parsimony approaches corroborate the inclusion of the new taxon within oryzomyines. The analyses also place the new form as sister species to Eremoryzomys polius, an Andean rat endemic to the Maranon valley. This biogeographical pattern is unusual amongst small terrestrial vertebrates, as a review of the literature points to few other similar examples of Andean–Atlantic Forest pairings, in hylid frogs, Pionus parrots, and other sigmodontine rodents. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161 , 357–390.     

Genetic and morphological variability in South American rodent Oecomys (Sigmodontinae, Rodentia): evidence for a complex of species

The rodent genus Oecomys (Sigmodontinae) comprises ~16 species that inhabit tropical and subtropical forests in Central America and South America. In this study specimens of Oecomys paricola Thomas, 1904 from Belém and Marajó island, northern Brazil, were investigated using cytogenetic, molecular and morphological analyses. Three karyotypes were found, two from Belém (2n = 68, fundamental number (FN) = 72 and 2n = 70, FN = 76) and a third from Marajó island (2n = 70, FN = 72). No molecular or morphological differences were found between the individuals with differing cytotypes from Belém, but differences were evident between the individuals from Belém and Marajó island. Specimens from Belém city region may represent two cryptic species because two different karyotypes are present in the absence of significant differences in morphology and molecular characteristics. The Marajó island and Belém populations may represent distinct species that have been separated for some time, and are in the process of morphological and molecular differentiation as a consequence of reproductive isolation at the geographic and chromosomal levels. Thus, the results suggest that O. paricola may be a complex of species.     

Comment on “The oldest South American Cricetidae (Rodentia) and Mustelidae (Carnivora): Late Miocene faunal turnover in central Argentina and the Great American Biotic Interchange” by D.H. Verzi and C.I. Montalvo [Palaeogeography, Palaeoclimatology, Palaeoecology 267 (2008) 284–291]

In a recent paper (Verzi, D.H., Montalvo, C.I., 2008. The oldest South American Cricetidae (Rodentia) and Mustelidae (Carnivora): late Miocene faunal turnover in central Argentina and the Great American Biotic Interchange. Palaeogeography, Palaeoclimatology, Palaeoecology 267, 284–291) the potentially oldest South American Cricetidae (Rodentia) and Mustelidae (Carnivora) have been reported from a Late Miocene (Huayquerian) assemblage located in central Argentina (Caleufú site, La Pampa province). These findings expand the biochron of these important families in South America 3–4 Ma earlier than previous records. However, several observations prevent us from accepting the validity of these assumptions. In this paper we discuss the age of the Caleufú assemblage, and the assignment of the GHUNLPam 21722 to Mustelidae. The Caleufú assemblage contains a mixture of Pliocene and Late Miocene faunal elements, and has been assigned to the Huayquerian only due to the “stage of evolution” of some rodents. The lack of isotopic or paleomagnetic data coupled with the isolation of this locality and the absence of a local stratigraphic succession inhibit its correlation with other palaeontological comparable sites and a robust inference about its chronology. The “stage of evolution” of a taxon is not a biostratigraphic tool, thus we cannot rule out the possibility that the Caleufú assemblage has an Early Pliocene (Montehermosan) age. The GHUNLPam 21722, a poorly preserved specimen, shows several characters (e.g., 4 lower incisors, mental foramina below the incisors absent, third lower incisor smaller than the first and second ones) that do not match with Mustelidae (or Carnivora) but instead strongly resemble those observed in didelphimorphian marsupials. The discussed caveats regarding Caleufu assemblage chronology and taxonomy indicate that new and detailed studies are needed before the hypotheses advanced by Verzi and Montalvo can be accepted.     

Eimeria ladronensis n. sp. and E. albigulae (Apicomplexa: Eimeriidae) from the woodrat, Neotoma albigula (Rodentia: Cricetidae)

Of 50 white-throated woodrats (Neotoma albigula) collected from Socorro Co., New Mexico, 21 (42%) had eimerian oocysts in their feces when examined. Of the 21 Neotoma found positive for Eimeria, 19 (90%) harbored a single eimerian species at time of examination. Eimeria albigulae Levine, Ivens & Kruidenier, 1957, was found in 18 (86%), and E. ladronensis n. sp. was found in five (24%) infected woodrats. Sporulated oocysts of E. ladronensis are ellipsoidal, 19-25 X 13-15 (21.4 +/- 1.3 X 14.1 +/- 1.1) micron, have a smooth wall and one or two polar granules, but lack a micropyle and an oocyst residuum. Sporocysts are tapered at one end, 7-10 X 6-7 (8.5 +/- 0.7 X 6.5 +/- 0.3) micron, and have a Stieda body and sporocyst residuum, but no substieda body. Prepatent periods for E. albigulae and E. ladronensis n. sp. are 5-6 and 8-9 days, respectively; patent periods are 7-18 and approximately 11 days, respectively.     

Eimeria ladronensis n. sp. and E. albigulae (Apicomplexa: Eimeriidae) from the Woodrat,Neotoma albigula (Rodentia: Cricetidae)1

Of 50 white-throated woodrats (Neotoma albigula) collected from Socorro Co., New Mexico, 21 (42%) had eimerian oocysts in their feces when examined. Of the 21 Neotoma found positive for Eimeria, 19 (90%) harbored a single eimerian species at time of examination. Eimeria albigulae Levine, Ivens & Kruidenier, 1957, was found in 18 (86%), and E. ladronensis n. sp. was found in five (24%) infected woodrats. Sporulated oocysts of E. ladronensis are ellipsoidal, 19–25 × 13–15 (21.4 ± 1.3 × 14.1 ± 1.1) μm, have a smooth wall and one or two polar granules, but lack a micropyle and an oocyst residuum. Sporocysts are tapered at one end, 7–10 × 6–7 (8.5 ± 0.7 × 6.5 ± 0.3) μm, and have a Stieda body and sporocyst residuum, but no substieda body. Prepatent periods for E. albigulae and E. ladronensis n. sp. are 5–6 and 8–9 days, respectively; patent periods are 7–18 and approximately 11 days, respectively.     

Genetic diversity and population structure of the Black-faced Spoonbill (Platalea minor) among its breeding sites in South Korea: Implication for conservation

The endangered Black-faced Spoonbill Platalea minor has experienced drastic reductions in population size, geographic distribution, and habitat availability throughout East Asia. In the present study, we examined population genetic structure and genetic diversity of Black-faced Spoonbills inhabiting five sites off the west coast of South Korea encompassing a few of its major breeding sites. Ten microsatellite loci and the mitochondrial sequence were used to assess patterns of genetic variation based on 63 individuals. Three ND2 haplotypes were found among 61 individuals; the remaining two were identified as Eurasian Spoonbills, revealing an unexpected hybridization between these two species having different ecological niches in South Korea—the Eurasian Spoonbill overwinters in inland areas, whereas the Black-faced Spoonbill inhabits coastal areas during the summer. Analyses of microsatellite variation revealed no discrete population structure among the five breeding sites but very weak genetic differentiation among geographically distant regions. Assignment tests identified several possible migrants among sites. Our findings suggested that Black-faced Spoonbills from the five breeding sites could be managed as a single population and highlighted the importance of conserving the populations from Maedo, Suhaam, and Namdong reservoir, which are geographically close and have retained high levels of genetic diversity and large populations.     

Effect of removing a dominant competitor,Akodon azarae (Rodentia,Sigmodontinae) on community and population parameters of small rodent species in Central Argentina

Abstract We studied the effect of removing Akodon azarae (Muridae, Sigmodontinae) on community and demographic parameters of rodent species in crop field borders of Central Argentina. We applied three replicated treatments: enclosure and removal of A. azarae, enclosure without removal, and a control without removal or enclosure. We conducted 14 monthly capture–mark–recapture samplings between October 1988 and March 1990. During the study period we observed an increase in Mus domesticus (Muridae, Murinae) abundance in removal areas. Other species did not respond to A. azarae removal. When A. azarae was removed, M. domesticus appeared to be competitively dominant over the remaining species of the community, increasing its relative abundance. Reproductive parameters of M. domesticus were more sensitive to treatments than survival parameters.     

New rodents (Cricetidae) from the Neogene of Curaçao and Bonaire,Dutch Antilles

Cordimus, a new genus of cricetid rodent, is described from Neogene deposits on the islands of Curaçao and Bonaire, Dutch Antilles. The genus is characterized by strongly cuspidate molars, the presence of mesolophs in most upper molars and the absence of mesolophids in lower molars. Similarities with the early cricetid Copemys from the Miocene of North America coupled with apparent derived characters shared with the subfamily Sigmodontinae suggest that Cordimus may be close to the root of the sigmodontine lineage, a possibility that remains to be tested through explicit phylogenetic analysis. Three species are recognized on the basis of size and details of molar morphology. Cordimus hooijeri sp. nov. is described from Bonaire on the basis of Holocene owl pellet material that consists of dentaries and postcranial material only. This species is presumed to be extinct, but focused surveys are needed to confirm this hypothesis. Cordimus debuisonjei sp. nov. and Cordimus raton sp. nov. are described from deposits on Tafelberg Santa Barbara in Curaçao. Although the age of these deposits is not known, they are most likely of late Pliocene or early Pleistocene age. Both are represented by numerous isolated molars and some osteological material.