Ecosystem controls on nitrogen fixation in boreal feather moss communities

N fixation in feather moss carpets is maximized in late secondary successional boreal forests; however, there is limited understanding of the ecosystem factors that drive cyanobacterial N fixation in feather mosses with successional stage. We conducted a reciprocal transplant experiment to assess factors in both early and late succession that control N fixation in feather moss carpets dominated by Pleurozium schreberi. In 2003, intact microplots of moss carpets (30 cm × 30 cm × 10–20 cm deep) were excavated from three early secondary successional (41–101 years since last fire) forest sites and either replanted within the same stand or transplanted into one of three late successional (241–356 years since last fire) forest sites and the transverse was done for late successional layers of moss. Moss plots were monitored for changes in N-fixation rates by acetylene reduction (June 2003–September 2005) and changes in the presence of cyanobacteria on moss shoots by microscopy (2004). Forest nutrient status was measured using ionic resin capsules buried in the humus layer. Late successional forests exhibit high rates of N fixation and consistently high numbers of cyanobacteria on moss shoots, but low levels of available N. Conversely, early successional forests have higher N availability and have low rates of N fixation and limited presence of cyanobacteria on moss shoots. Transplantation of moss carpets resulted in a significant shift in presence and activity of cyanobacteria 1 year after initiation of the experiment responding to N fertility differences in early versus late successional forests.     

Human urothelial micronucleus assay to assess genotoxic recovery by reduction of arsenic in drinking water: a cohort study in West Bengal, India

Chronic exposure to arsenic through drinking water affects nearly 26 million individuals in West Bengal, India. Cytogenetic biomarkers like urothelial micronucleus (MN) are extensively used to monitor arsenic exposed population. In 2004–2005, 145 arsenic exposed individuals and 60 unexposed controls were surveyed of which 128 exposed individuals and 54 unexposed controls could be followed up in 2010–2011. In 2004–2005, the extent of arsenic content in the drinking water was 348.23 ± 102.67 μg/L, which was significantly lowered to 5.60 ± 10.83 μg/L in 2010–2011. Comparing the data obtained between 2004–2005 and 2010–2011, there was a significant decline in the MN frequency, when assayed in 2010–2011 compared to 2004–2005. Hence, we infer that urothelial MN can be utilized as a good biomarker in detecting remedial effects from toxicity of the low dose of arsenic through drinking water.     

Bayesian Network Reconstruction Using Systems Genetics Data: Comparison of MCMC Methods

Reconstructing biological networks using high-throughput technologies has the potential to produce condition-specific interactomes. But are these reconstructed networks a reliable source of biological interactions? Do some network inference methods offer dramatically improved performance on certain types of networks? To facilitate the use of network inference methods in systems biology, we report a large-scale simulation study comparing the ability of Markov chain Monte Carlo (MCMC) samplers to reverse engineer Bayesian networks. The MCMC samplers we investigated included foundational and state-of-the-art Metropolis–Hastings and Gibbs sampling approaches, as well as novel samplers we have designed. To enable a comprehensive comparison, we simulated gene expression and genetics data from known network structures under a range of biologically plausible scenarios. We examine the overall quality of network inference via different methods, as well as how their performance is affected by network characteristics. Our simulations reveal that network size, edge density, and strength of gene-to-gene signaling are major parameters that differentiate the performance of various samplers. Specifically, more recent samplers including our novel methods outperform traditional samplers for highly interconnected large networks with strong gene-to-gene signaling. Our newly developed samplers show comparable or superior performance to the top existing methods. Moreover, this performance gain is strongest in networks with biologically oriented topology, which indicates that our novel samplers are suitable for inferring biological networks. The performance of MCMC samplers in this simulation framework can guide the choice of methods for network reconstruction using systems genetics data.     

Enhancing the growth of Physcomitrella patens by combination of monochromatic red and blue light - a kinetic study

In the current work we demonstrate the relevance of monochromatic light conditions in moss plant cell culture. Light intensity and illumination wavelength are important cultivation parameters due to their impact on growth and chlorophyll formation kinetics of the moss Physcomitrella patens. This moss was chosen as a model organism due to its capability to produce complex recombinant pharmaceutical proteins. Filamentous moss cells were cultivated in mineral medium in shaking flasks. The flasks were illuminated by light emitting diodes (LED) providing nearly monochromatic red and blue light as well as white light as a reference. A maximum growth rate of 0.78 day((1) was achieved under additional CO(2) aeration and no growth inhibition was observed under high light illumination. The application of dual red and blue light is the most effective way to reach high growth and chlorophyll formation rates while minimizing energy consumption of the LEDs. These observations are discussed as effects of photo sensory pigments in the moss. The combination of monochromatic red and blue light should be considered when a large scale process is set up.     

祁连山北坡青海云杉林下苔藓层对土壤水分空间差异的影响

苔藓层是青海云杉林(Picea crassifolia forest)下的一个重要层片,它通过截持降水和减少土壤蒸发,对土壤水分产生影响。以祁连山北坡排露沟小流域的一个阴坡(海拔2700 m,植被为青海云杉林)作为样坡,于2010—2012年生长季对青海云杉林下有、无苔藓层覆盖地点的土壤水分进行对比观测。结果表明在祁连山青海云杉林下,苔藓层覆盖能减少土壤水分的空间差异。主要表现为:(1)无苔藓覆盖各观测点土壤含水量极差达62.2 mm,空间变异系数(CV)为17.3%;有苔藓层覆盖观测点土壤含水量空间变异系数为2.3%,仅为无苔藓覆盖地点的1/7.5,空间差异极显著(sig.0.001)。(2)在持续无雨、小雨后和连阴雨天气下,有苔藓覆盖地点土壤含水量空间差异均显著小于无苔藓覆盖地点(sig.0.05)。在持续无雨的情况下,无苔藓层覆盖各观测点土壤含水量空间变异系数平均值为19.8%,有苔藓覆盖地点土壤含水量空间变异系数平均值为6.6%,仅为无苔藓覆盖地点的1/3。小雨后,无苔藓覆盖各观测点土壤含水量空间变异系数平均值为15.2%,有苔藓覆盖地点土壤水分空间变异系数平均为5.1%,为无苔藓覆盖地点的1/3。连阴雨后,无苔藓覆盖各观测点土壤含水量空间变异系数平均为15.4%,有苔藓覆盖地点土壤水分空间变异系数平均为4.6%,为无苔藓覆盖地点的1/3.3。(3)持续无雨的情况下,苔藓层减小土壤水分空间差异的作用主要反映在土壤表层0—15 cm,对深层的作用不显著。而小雨和连阴雨后,苔藓层对15—80 cm深层土壤影响显著,而表层0—15 cm没有明显规律。     

石漠化地区苔藓结皮对土壤养分及生态化学计量特征的影响

苔藓结皮是石漠化生态系统的重要地表覆被物,但其在土壤养分累积和元素循环过程中的作用尚不明确。以我国贵州典型喀斯特高原峡谷石漠化区-花江大峡谷两岸不同等级石漠化生境下的苔藓结皮及其覆被土壤为研究对象,研究了苔藓结皮覆被对土壤养分及生态化学计量特征的影响。结果表明:(1)苔藓结皮层养分含量显著高于下层土壤,结皮覆被土壤有机碳(SOC)、全氮(TN)、全磷(TP)、全钾(TK)、碱解氮(AN)、速效磷(AP)、速效钾(AK)平均含量分别为25.95、3.05、1.00、5.10 g/kg和189.61、1.59、275.10 mg/kg,较无结皮覆被的裸土分别增加46.08%、26.50%、53.62%、20.25%、25.24%、110.47%和83.76%。(2)苔藓结皮覆被土壤C/N、C/K、P/K显著高于裸土,且随土层加深而递减;N/P显著低于裸土,且随土层加深而升高。(3)苔藓结皮覆被土壤养分恢复指数为33.16%—72.48%,呈现随石漠化等级升高而增加的趋势,中度和强度石漠化阶段较无石漠化阶段分别增加83.26%和118.58。本研究表明苔藓结皮能有效促进土壤养分累积,加速石漠...     

Strategies for restoring the structure and function of lichen‐moss biocrust communities

Biological soil crusts (biocrusts) are crucial components of dryland ecosystems, but they are slow to recover following disturbance. Herein, we evaluated several methods for restoring lichen‐moss biocrusts that included factorial applications of moss fragments in a water‐slurry (1) with and without lichen fragments (to restore biocrust taxonomic structure), (2) with and without clay (to facilitate establishment), and (3) with and without jute ground cloth (to facilitate establishment). Three and four years after inoculation, moss and lichen cover was up to five and eight times higher on jute ground cloth than on bare ground, respectively. Lichen cover was six times higher in plots where lichen fragments were added. Clay amendments did not increase moss or lichen establishment. To understand the effects of biocrust recovery on soil properties, we measured soil inorganic nitrogen, microbial biomass carbon, and soil water availability in restoration and control plots. Restored biocrusts decreased inorganic NH₄‐N availability by 67% when compared to controls 3 years after inoculation, but did not influence the availability of inorganic NO₃‐N, soil water, or microbial biomass carbon. Our results demonstrate that adding a biocrust inoculant to jute ground cloth can expedite recovery of lichen‐moss biocrust and reestablish its influence on soil properties within a few years.     

黄土高原丘陵区生物结皮土壤的斥水性

采用滴水穿透时间法和酒精溶液入渗法,研究了黄土高原丘陵区浅色藻结皮、深色藻结皮、藻+少量藓结皮、藓+少量藻结皮、藓结皮5种不同发育阶段的原状生物结皮土壤的斥水性及其与土壤含水量的关系.结果表明: 生物结皮增加了土壤的斥水性,其斥水强度和持久性均显著增加.生物结皮土壤的斥水性随生物结皮的演替逐渐降低,当生物结皮中藓类植物盖度在20%以上时,斥水持久性显著低于藻结皮.生物结皮土壤的斥水性与土壤含水量及优势种密切相关,藓类生物结皮土壤的斥水性随着含水量的降低逐渐增加,藻类生物结皮土壤的斥水性随含水量的变化呈双峰曲线.     

Oak chronology development in the Czech Republic and its teleconnection on a European scale

A prerequisite for successful dating of wooden archaeological finds and historic wooden constructions in a specific territory is the existence of a chronology. In the Czech Republic the species most frequently dated by dendrochronology is oak (Quercus spp.). There are two territories where oak forests can be found (Bohemia and Moravia/Silesia), which are divided by an area without oak – the Highlands (Vyso?ina). The previous oak chronology for the Czech Republic from 2005 was extended in 2010, and currently we have a discontinuous oak chronology (CZGES 2010) ranging from 4682 bc to 2006 ad with a large sample size between 760 ad and the present. When comparing this chronology with European chronologies, the highest degree of similarity has been observed with chronologies for Eastern Austria, most of Germany and the Polish part of South Silesia. When comparing the chronologies for Moravia/Silesia (MORGES 2010) and Bohemia (CECHGES 2010) separately with chronologies from the Pannonian Basin, the Moravian/Silesian chronology manifests higher degrees of similarity. The Czech oak chronology enlarges the European network of chronologies, which is necessary for dendroarchaeological applications mainly.     

Direct uptake of soil nitrogen by mosses

Mosses are one of the most diverse and widespread groups of plants and often form the dominant vegetation in montane, boreal and arctic ecosystems. However, unlike higher plants, mosses lack developed root and vascular systems, which is thought to limit their access to soil nutrients. Here, we test the ability of two physiologically and taxonomically distinct moss species to take up soil- and wet deposition-derived nitrogen (N) in natural intact turfs using stable isotopic techniques (15N). Both species exhibited increased concentrations of shoot 15N when exposed to either soil- or wet deposition-derived 15N, demonstrating conclusively and for the first time, that mosses derive N from the soil. Given the broad physiological and taxonomic differences between these moss species, we suggest soil N uptake may be common among mosses, although further studies are required to test this prediction. Soil N uptake by moss species may allow them to compete for soil N in a wide range of ecosystems. Moreover, since many terrestrial ecosystems are N limited, soil N uptake by mosses may have implications for plant community structure and nutrient cycling. Finally, soil N uptake may place some moss species at greater risk from N pollution than previously appreciated.     

Glycerol alters cytoskeleton and cell adhesion while inhibiting cell proliferation.

Our previous studies with various cell lines and human glioma cells showed that glycerol suppresses cell proliferation. In this study, we examined the effects of glycerol on the cytoskeleton, general morphology and attachment of Baby Hamster Kidney (BHK) cells. In glycerol-treated cells proliferation was suppressed, the microfilament network was extensively reorganized and the microtubule network was more clearly defined, while the cell thickness, as observed by scanning electron microscopy (SEM), was decreased. In addition, glycerol treatment resulted in an increase in the number of nucleoli per cell and in the appearance of non-mitotic rounded cells. Glycerol treatment increased the time needed to trypsinize BHK cells from the culture dishes and reduced the time required for cell reattachment. We suggest that glycerol treatment provides a non-toxic tool to examine mechanisms of proliferation arrest.     

Systematic reviews and meta-analyses of preclinical studies: publication bias in laboratory animal experiments

In 2006, Peters et al. identified 86 systematic reviews (SRs) of laboratory animal experiments (LAEs). They found 46 LAE meta-analyses (MAs), often of poor quality. Six of these 46 MAs tried to assess publication bias. Publication bias is the phenomenon of an experiment's results determining its likelihood of publication, often over-representing positive findings. As such, publication bias is the Achilles heel of any SR. Since researchers increasingly become aware of the fact that SRs directly support the 'three Rs', we expect the number of SRs of LAEs will sharply increase. Therefore, it is useful to see how publication bias is dealt with. Our objective was to identify all SRs and MAs of LAEs where the purpose was to inform human health published between July 2005 and 2010 with special attention to MAs' quality features and publication bias. We systematically searched Medline, Embase, Toxline and ScienceDirect from July 2005 to 2010, updating Peters' review. LAEs not directly informing human health or concerning fundamental biology were excluded. We found 2780 references of which 163 met the inclusion criteria: 158 SRs, of which 30 performed an MA, and five MAs without an SR. The number of SRs roughly doubled every three years since 1997. The number of MAs roughly doubled every five years since 1999. Compared with before July 2005, more MAs were preceded by SR and reported on (quality) features of included studies and heterogeneity. A statistically significant proportion of MAs considered publication bias (26/35) and tried to formally assess it (21/35).     

Improved water retention links high species richness with increased productivity in arctic tundra moss communities

A positive relationship between plant species richness and ecosystem functioning has been found in a number of experimental studies. Positive species interactions at high species numbers have been suggested as a cause, but mechanisms driving positive interactions have not often been tested. In this experiment we asked three questions: (1) What is the relationship between species richness and productivity in experimentally constructed moss communities? (2) Is this relationship affected by plant density? and (3) Can changes in moisture absorption and retention explain observed relationships? To answer these questions we exposed arctic tundra moss communities of different species richness levels (1–11 species) and two different densities in the greenhouse to two levels of drought (short and long). Biomass (by the community and individual species), height and community moisture absorption and retention were measured as response variables. High species diversity increased productivity (more so in low-density plots than in high-density plots), but only when plots were watered regularly. Plot moisture retention was improved at high species richness as well, and plant height and variation in height was increased compared to plants in monoculture. Under high-density and short-drought conditions 10 out of 12 species grew better in mixture than in monoculture, but under the long drought treatment only six species did. A positive feedback loop between biomass and improved humidity under high diversity was supported by path analysis. We conclude that in this community the relationship between species richness and productivity depends on moisture availability and density, with improved water absorption and retention likely to be the mechanism for increased plant growth when drought periods are short. Furthermore, since this is the opposite of what has been found for temperate moss communities, conclusions from one system cannot automatically be extrapolated to other systems.     

The discovery of Arylex™ active and Rinskor™ active: Two novel auxin herbicides

Multiple classes of commercially important auxin herbicides have been discovered since the 1940s including the aryloxyacetates (2,4-D, MCPA, dichlorprop, mecoprop, triclopyr, and fluroxypyr), the benzoates (dicamba), the quinoline-2-carboxylates (quinclorac and quinmerac), the pyrimidine-4-carboxylates (aminocyclopyrachlor), and the pyridine-2-carboxylates (picloram, clopyralid, and aminopyralid). In the last 10 years, two novel pyridine-2-carboxylate (or picolinate) herbicides were discovered at Dow AgroSciences. This paper will describe the structure activity relationship study that led to the discovery of the 6-aryl-picolinate herbicides Arylex™ active (2005) and Rinskor™ active (2010). While Arylex was developed primarily for use in cereal crops and Rinskor is still in development primarily for use in rice crops, both herbicides will also be utilized in additional crops.     

Impact of yellow fever outbreaks on two howler monkey species (Alouatta guariba clamitans and A. caraya) in Misiones,Argentina

Two yellow fever outbreaks (YFOs) ocurred in northeastern Argentina between November 2007 and October 2008, seriously affecting populations of two howler monkey species: the brown howler Alouatta guariba clamitans and the black howler Alouatta caraya. Both howlers live syntopically in El Piñalito Provincial Park, Misiones, where four groups (36 individuals) were studied since January 2005. The first dead howlers were found on January 20, 2008, in El Piñalito. Systematic searches found 14 dead howlers within the area (12 from the study groups and two from neighboring groups), with only two young seen on January 25, 2008, and none found since up to December 2008. In October 2008, another YFO hit howler monkey populations from El Soberbio, Misiones. Overall, 59 howlers were found dead in Misiones from November 2007 to December 2008. Thanks to the alert of the howler's death in El Piñalito, a prompt human vaccination campaign started in the area. Wild howler monkey populations from both species are in a delicate situation in Misiones, especially the brown howler, an already endangered species in Argentina and endemic to the Atlantic Forest. If we add the recurrence of YFOs to the reduction of suitable habitat to small fragments, it could be only a matter of time until howler populations disappear from the Upper Paraná Atlantic Forest in Misiones. Am. J. Primatol. 72:475–480, 2010. © 2010 Wiley‐Liss, Inc.     

Between-year variation in climate-related growth of circumarctic populations of the moss Hylocomium splendens

1. The correlation between climatic variables and past (up to 20 years) growth was studied in seven circumarctic populations of the moss Hylocomium splendens, using retrospective analyses of growth. We hypothesized that relationships between growth and climate would be simpler in an ectohydric moss than in higher plants and that the moss could provide high signal-to-noise ratios of responses to climatic variation.
2. Growth parameters of the moss were strongly correlated with early summer temperatures and with the length of the growing season. Annual segment mass, growth rates and degeneration rates were highest at the mildest subarctic sites and lowest at the high arctic site. In contrast, 'longevity' (age of the oldest segment) increased at the climatically harsher sites.
3. Between-year growth variations at two contrasting sites were significantly correlated with June and July temperatures and, to a lesser extent, with early-season precipitation at one of the sites.
4. The moss currently tolerates a wide range of climates and large interannual variations in temperature and is likely to be at risk from climatic change only at the southern edge of its range.
5. The climate-change component most likely to affect the growth of H. splendens in the Arctic and Subarctic will be a lengthening of the growing season and in increase in early summer temperatures provided that moisture is not limiting.
6. Hylocomium splendens is a suitable species for monitoring climatic change at a circumarctic scale.     

Descriptions of the Gulf VH/PRO-NET and MAFF/Guildline unencased high-speed plankton samplers

Two high-speed plankton samplers (Gulf VII/PRO-NET and MAFF/Guildline)currently in use to sample pelagic eggs and larvae in watersaround the UK are described. Both samplers are modificationsof Gulf III type samplers and are capable of being towed atspeeds of up to 7 knots (3.6 m s^–1). The performance ofthe samplers (flow rates, degree of clogging of the nets andsample depth profiles) can be monitored during deployment. Thereal-time monitoring packages also provide vertical profilesof temperature, salinity and chlorophyll a fluorescence. Bothsamplers can be constructed in different sizes to suit the vesselfrom which the sampler is deployed and the expected concentrationof plankton in the sampling area.     

The potential value of the seaweed Ceylon moss (Gelidium amansii) as an alternative bioenergy resource

Sea weed (Ceylon moss) possesses comparable bioenergy production potential to that of land plants. Ceylon moss has high content of carbohydrates, typically galactose (23%) and glucose (20%). We have explored the possibility of sodium chlorite in Ceylon moss pretreatment that can ultimately increase the efficiency of enzymatic saccharification. In an acidic medium, chlorite generates ClO₂ molecules that transform lignin into soluble compounds without any significant loss of carbohydrate content and this procedure is widely used as an analytical method for holocellulose determination. Sodium chlorite-pretreated samples resulted in glucose yield up to 70% with contrast of only 5% was obtained from non-pretreated samples.The efficiency of enzymatic hydrolysis is significantly improved by sodium chlorite pretreatment, and thus sodium chlorite pretreatment is potentially a very useful tool in the utilisation of Ceylon moss biomass for ethanol production or bioenergy purposes.     

Production of taxa-4(5),11(12)-diene by transgenic Physcomitrella patens

Taxadiene synthase gene from Taxus brevifolia was constitutively expressed in the moss Physcomitrella patens using a ubiquitin promoter to produce taxa-4(5),11(12)-diene, the precursor of the anticancer drug paclitaxel. In stable moss transformants, taxa-4(5),11(12)-diene was produced up to 0.05% fresh weight of tissue, without significantly affecting the amounts of the endogenous diterpenoids (ent-kaurene and 16-hydroxykaurane). Unlike higher plants that had been genetically modified to produce taxa-4(5),11(12)-diene, transgenic P. patens did not exhibit growth inhibition due to alteration of diterpenoid metabolic pools. Thus we propose that P. patens is a promising alternative host for the biotechnological production of paclitaxel and its precursors.