Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoir

The scale and patterns of movement and habitat use are primary considerations in the conservation and management of threatened species. Movement, activity and habitat use of the threatened two-spined blackfish Gadopsis bispinosus were assessed in a small upland reservoir in south-eastern Australia using manual and remote radio-telemetry. Movements and activity of two-spined blackfish (n?=?19) were studied over a 28-day period and exhibited proportionately large directional crepuscular movement and activity with heightened activity continuing throughout the night (although movement was subdued). Two daily movement strategies were observed: movements from diurnal home-shelter habitats (predominantly rock) to macrophytes at night (14 individuals), and occupation of macrophytes during the entire diel period and restricted movement (five individuals). Daily movement strategies were fixed (not plastic) among all individuals, with one exception, for the duration of the study period. Rock, fallen timber and macrophytes were the most commonly used daytime shelter habitat (in order of preference). Although some information exists on movements and habitat use of this species and the congeneric river blackfish G. Marmoratus in lotic environments, we present the first study of movements and habitat use for either species in lentic environments. Given the occupation of lentic environments by this threatened species, the data presented in this study provide insight into the habitat requirements for this species, and offer opportunities for habitat enhancement in existing reservoirs within the species’ geographic range.     

Response of two-spined blackfish <Emphasis Type="Italic">Gadopsis bispinosus</Emphasis> to short-term flow fluctuations in an upland Australian stream

Environmental flows are applied to regulated rivers, predominantly with the aim of benefiting native fauna. However, the outcomes for biodiversity and the mechanisms that underpin changes due to these manipulations are poorly understood. We examined the effects of elevated water release, of the magnitude used for riffle maintenance, on the movement and habitat use of the locally-threatened two-spined blackfish, Gadopsis bispinosus, in the Cotter River, a regulated upland stream in south-eastern Australia. We compared the behaviour of radio-tagged individuals during baseline flow conditions (0.12 m³ s⁻¹) and during elevated flow releases (1.74 m³ s⁻¹). Eight individuals (196 ± 8 mm TL) were radio-tracked at one site over 22 days, and six individuals (180 ± 5 mm TL) were monitored by fixed telemetry stations at a second site for 1 month. At both the sites, two-spined blackfish were nocturnal and occupied small linear ranges (23 ± 6 m). They preferentially used pools, but also used runs and riffles. Elevated discharge did not significantly affect movement, activity or dispersal of two-spined blackfish. Two individuals utilised inundated vegetation during high flow. Despite a small number of behavioural changes, there was no response to elevated flow at the population level. It is likely that the benthic nature of this species precludes its behaviour being affected by a 15-fold increase in-stream discharge. However, the indirect effects of flows of this magnitude on two-spined blackfish, and their responses to discharges of greater magnitude, remain to be investigated.     

Opportunistic use of estuarine habitat by juvenile bull trout, <Emphasis Type="Italic">Salvelinus confluentus</Emphasis>, from the Elwha River before,during, and after dam removal

Estuaries are used by anadromous fishes, either as the definitive marine habitat or as transition habitat as they move to fully marine waters, and extent of estuary use may vary with habitat conditions and fish attributes. Bull trout (Salvelinus confluentus) are commonly fluvial or adfluvial, though anadromous populations also exist. However, little is known about estuary use, especially by juveniles of this threatened species. We sampled the estuaries of the Elwha River, where a spawning population exists, and the nearby Salt Creek, where none exists, to reveal seasonal timing of estuarine use by juvenile bull trout, size of those using the estuary, and possible use of the non-natal estuary. We captured juvenile bull trout (all ≥100 mm FL, most <300 mm) in the Elwha River estuary in all months except August, but primarily December through May. None was captured in Salt Creek’s estuary despite comparable sampling effort. We also evaluated how dam removal on the Elwha River influenced bull trout estuarine occupancy by sampling before, during, and after dam removal, because this process enlarged the estuary but also increased turbidity and sediment transport in the lower river. Catches were low before dam removal, increased during and immediately after removal, and returned to low levels in recent years, suggesting that juveniles temporarily sought refuge from conditions associated with dam removal. Our findings indicate juvenile bull trout occupy estuarine habitat opportunistically; this information may aid conservation efforts as anadromous populations occur elsewhere in rivers with estuaries altered by human development.     

Australian lungfish, <Emphasis Type="Italic">Neoceratodus forsteri</Emphasis>, threatened by a new dam

The Australian lungfish, Neoceratodus forsteri, exists as remnant natural populations in two rivers of south-east Queensland, Australia, and several translocated populations. Lungfish habitats have been impacted by agriculture and forestry, alien plants and fish and by river impoundment and regulation of flows. The species has been listed as vulnerable under Australian Commonwealth legislation. A proposal to construct Traveston Crossing Dam on the free-flowing main channel of the upper Mary River could seriously threaten the lungfish. The dam can be stopped by Commonwealth legislation if important populations of lungfish in the Mary River are likely to be significantly impacted by the new dam. This paper assembles evidence that impoundment of the Mary River and regulation of river flows are likely to decrease and fragment important lungfish populations, disrupt the breeding cycle, reduce juvenile recruitment, and isolate and decrease habitat availability/quality to such an extent that the species is likely to decline. Proposed mitigation strategies include fish transfer facilities, provision of flow releases from the dam (environmental flows) to sustain lungfish habitat and breeding downstream, and translocation of hatchery-reared juvenile lungfish into suitable natural habitats. These mitigation efforts may not be sufficient to secure the genetic diversity and long-term viability of lungfish populations in the Mary River.     

Influence of damming on anuran species richness in riparian areas: A test of the serial discontinuity concept

Almost all large rivers worldwide are fragmented by dams, and their impacts have been modeled using the serial discontinuity concept (SDC), a series of predictions regarding responses of key biotic and abiotic variables. We evaluated the effects of damming on anuran communities along a 245‐km river corridor by conducting repeated, time‐constrained anuran calling surveys at 42 locations along the Broad and Pacolet Rivers in South Carolina, USA. Using a hierarchical Bayesian analysis, we test the biodiversity prediction of the SDC (modified for floodplain rivers) by evaluating anuran occupancy and species diversity relative to dams and degree of urbanized land use. The mean response of the anuran community indicated that occupancy and species richness were maximized when sites were farther downstream from dams. Sites at the farthest distances downstream of dams (47.5 km) had an estimated ~3 more species than those just below dams. Similarly, species‐specific occupancy estimates showed a trend of higher occupancy downstream from dams. Therefore, using empirical estimation within the context of a 245‐km river riparian landscape, our study supports SDC predictions for a meandering river. We demonstrate that with increasing distance downstream from dams, riparian anuran communities have higher species richness. Reduced species richness immediately downstream of dams is likely driven by alterations in flow regime that reduce or eliminate flows which sustain riparian wetlands that serve as anuran breeding habitat. Therefore, to maintain anuran biodiversity, we suggest that flow regulation should be managed to ensure water releases inundate riparian wetlands during amphibian breeding seasons and aseasonal releases, which can displace adults, larvae, and eggs, are avoided. These outcomes could be achieved by emulating pre‐dam seasonal discharge data, mirroring discharge of an undammed tributary within the focal watershed, or by basing real‐time flow releases on current environmental conditions.     

水电梯级开发对河流生境质量及纵向连通性影响评价——以五布河和藻渡河为例

河流物理生境是维持河流生物多样性及生态功能的关键因素。生境质量的好坏能反应河流健康的程度。以我国西南地区的五布河和藻渡河为例,采用河流生境调查方法(RHS)和树状水系连通性指数(DCI)定量评估水电梯级开发和水坝建设对河流物理生境质量和河流纵向连通性的影响。结果表明,水电梯级开发后,五布河干流未受水坝明显影响河段、库区河段、减水河段分别为20.48、43.34、18.09 km,占总长度的25.0%、52.9%、22.1%。藻渡河干流河口至双河口段未受水坝明显影响河段、库区河段、减水河段分别为58.61、8.28、18.99 km,占总长度的68.2%、9.6%、占22.1%。水电梯级开发后,五布河干流河流片段由26个增至29个,藻渡河干流河流片段由2个增至5个。两条河流纵向连通性分别降低了7.8%和38.0%。五布河坝下减水河段生境质量降低14.1%,库区河段生境质量变化不明显。藻渡河减水河段生境质量与近自然河段无显著差异;两座坝后式电站库区河段生境质量明显低于近自然河段。水电梯级开发对两条河流物理生境的影响与水坝位置选择、建坝前的自然阻隔数量与分布、河流地貌特征、水电资源开发方式等密切相关。     

流域库坝工程开发的生物多样性敏感度分区

流域生态敏感性是流域生态系统遇到干扰时产生生态失衡与生态环境问题的难易程度和可能性大小,生物多样性是其影响最为重要的生态因子。主要考虑物种丰富度、珍稀程度、濒危程度、保护等级和生态系统类型等生物多样性敏感因子,借助GIS强大的空间数据采集和建模分析能力,在专家打分求取敏感因子权重基础上,通过空间模型计算生物多样性敏感度综合得分。基于二级流域综合得分最大值,采用ARCGIS自然间断点法实现敏感度分区,结果表明:极敏感区域主要分布在长江区的岷沱江、金沙江石鼓以下、金沙江石鼓以上、宜宾至宜昌、嘉陵江流域,珠江区的郁江、红柳河和西江流域,西南诸河区的澜沧江、红河和怒江及伊洛瓦底江流域,黄河区的龙羊峡以上流域等,这些区域水生生物特有种和受威胁物种丰度大,国家级自然保护区密集,是陆地生物多样性最丰富的地区。不敏感区域主要分布在松花江区除第二松花江以外流域,西北诸河区的塔里木盆地荒漠、古尔班通古特荒漠、中亚西亚内陆河、塔里木河干流等荒漠区,松花江区低温高寒,具有大森林、大草原、大湿地、大农田和大水域的特点,库坝工程对其生物多样性产生影响的可能性较小,西北诸河的荒漠区生境严酷,生物多样性贫乏,也不具备修建大型水库的条件,生物多样性敏感度也较低。其它区域介于二者之间,因其所处的生态系统类型、物种丰富度、珍稀程度、濒危程度和保护等级不一样,生物多样性敏感度各异。对流域库坝工程产生的生物多样性敏感度进行辨识,可为未来流域水资源合理和适度开发提供科学依据。     

Riparian vegetation diversity along regulated rivers: contribution of novel and relict habitats

1. The creation and maintenance of spatial and temporal heterogeneity by rivers flowing through floodplain landscapes has been disrupted worldwide by dams and water diversions. Large reservoirs ( novel ecosystems ) now separate and isolate remnant floodplains ( relict ecosystems ). From above, these appear as a string of beads, with beads of different sizes and string connections of varying lengths.
2. Numerous studies have documented or forecast sharp declines in riparian biodiversity in relict ecosystems downstream from dams. Concurrently, novel ecosystems containing species and communities of the former predam ecosystems have arisen along all regulated rivers. These result from the creation of new environments caused by upper reservoir sedimentation, tributary sedimentation and the formation of reservoir shorelines.
3. The contribution of novel habitats to the overall biodiversity of regulated rivers has been poorly studied. Novel ecosystems may become relatively more important in supporting riverine biodiversity if relict ecosystems are not restored to predam levels. The Missouri River of the north-central U.S.A. is used to illustrate existing conditions on a large, regulated river system with a mixture of relict and novel ecosystems.     

Three-dimensional microhabitat use by young pool-dwelling Atlantic salmon and brown trout

This study, conducted in deep pools in three rivers, is the first to show a clear three-dimensional habitat segregation in size groups (equivalent to age groups) of juvenile Atlantic salmon, Salmo salar, and brown trout, S. trutta. Young-of-the-year (YOY) held position near the river bed and the river bank; height above bottom and distance from river bank increased significantly with fish size. Brown trout held position significantly further from the substratum, and were on average closer to the river bank, than salmon. The vertical segregation of young salmonids was most evident among young trout, with YOY being closest to the bottom. This size-dependent segregation is probably a result of different outcomes of the trade-off between the conflicting interests of higher food availability and greater predation risk in the upper part of the water column. We suggest that intercohort predation and competitive interactions were the main reasons why YOY of both species and salmon yearlings held positions close to the river bed. We found no evidence of salmon and trout parr preferring particular water depths, as studies in shallow parts of rivers have suggested, as the correspondence of use and availability of microhabitats at different water depths was high in the pools. Copyright 1999 The Association for the Study of Animal Behaviour.     

Evaluating the impacts of wood production and trade on bird extinction risks

Biodiversity loss can be accelerated by human consumption in regions that are far removed from habitat degradation because of economic globalization, but no study has directly quantified the effects of global trade on extinction risks at a global scale with consideration for species differences. We propose a novel biodiversity footprint index based on bird extinction risks to evaluate the effects of global wood production and trade on biodiversity. Using 536 endangered bird species threatened by wood harvesting and logging, we calculated the “quasi-extinction” probabilities, that is, the probabilities that population sizes become lower than an extinction threshold after habitat loss based on initial population sizes and forest habitat loss rates. We then used bilateral wood trade data to link the biodiversity impacts in wood exporters to wood importers. We found that if recent trends in forest cover loss continue until 2100, bird species in Brazil would be the most rapidly and heavily affected by wood production and trade, followed by those in Indonesia; these two countries alone would account for about half of all global bird extinctions. Large-scale wood importers (i.e., China, Japan, and the United States) significantly elevate overseas extinction risks and, simultaneously, reduce domestic impacts, indicating a heavy responsibility of these countries for global biodiversity loss. We also conducted a scenario analysis, which showed that the total projected number of extinct species would not decrease if each country produced the amount of wood materials necessary to meet current consumption levels. This is because bird extinction risks in tropical wood importers, such as Mexico and the Philippines, as well as Japan and China will increase if these countries increase domestic wood production. Our biodiversity footprint index is useful to identify countries whose bird species are highly affected by wood production and trade, and to quantify the role of wood trade in bird species extinctions. Additional scenario analyses are needed to establish effective patterns of wood production and consumption for bird biodiversity conservation.     

Host-dependent genetic variation in freshwater pearl mussel (Margaritifera margaritifera L.)

Freshwater fishes are vulnerable to changes in water quality, physical habitat and connectivity resulting from drought, particularly in regulated rivers. When adequate river flows return, the recovery of populations might depend on the duration and consequences of drought. Rivers of the highly regulated Murray–Darling Basin in south-eastern Australia terminate at two large, shallow lakes that are separated from the estuary by tidal barrages. Over-abstraction of water and widespread prolonged drought (1997–2010) placed the lakes under severe environmental stress, culminating in critical water level recession from 2007 to 2010. Concurrently, most freshwater fish populations collapsed. We investigate shifts in fish assemblages resulting from habitat inundation in the lakes following the drought. The inundation and re-connection of the lakes and fringing habitats led to a substantial reduction of salinity throughout the region, and aquatic vegetation shifted from salt-tolerant to freshwater species. Fish assemblages became increasingly characterized by common freshwater taxa (ecological generalists), including high proportions of alien species. There were no indications of population recovery for three threatened species. The findings emphasize that short-lived fishes with specialized habitat requirements are vulnerable to severe population declines during prolonged drought in regulated rivers, which might restrict their recovery when adequate flows return.     

The occurrence of the Broad‐toothed Rat Mastacomys fuscus in relation to feral Horse impacts

Feral Horse (Equus caballus) impacts in northern Kosciuszko National Park, New South Wales, Australia are directly occurring in habitat of the nationally threatened Broad‐toothed Rat (Mastacomys fuscus). This species is endemic primarily to the mountain regions of south‐eastern mainland Australia and Tasmania, with a disjunct population at Barrington Tops. The Broad‐toothed Rat's preferred habitat is being increasingly impacted by browsing and trampling associated with the expansion of feral horse populations. This study surveyed 180 sites supporting preferred habitat for this species to determine Broad‐toothed Rat presence and relative abundance in relation to the level of feral horse impacts within the reserve. There was a significant negative relationship between feral horse impacts and both Broad‐toothed Rat presence and abundance. No scats were identified at localities where feral horse impacts were severe, and at moderate horse impact sites, there was a proportion (34%) without scats found. Locations with low horse impacts had little impact on Broad‐toothed Rat occurrence. As feral horse populations increase, Broad‐toothed Rat populations may be further impacted. Such impacts will be due to the loss of vegetation cover from feral horse trampling and grazing, making animals more vulnerable to predation by predators or impacting on their ability to disperse to more suitable habitat. Habitat remnants and vegetation corridors along drainage lines require protection from feral horses to prevent localized extinctions of Broad‐toothed Rat.     

The impact of an introduced predator on a threatened galaxiid fish is reduced by the availability of complex habitats

1. The availability of complex habitats such as macrophytes may be vital in determining the outcomes of interactions between introduced predators and native prey. Introduced brown trout (Salmo trutta) have impacted numerous small native freshwater fishes in the southern hemisphere, but the potential role of complex habitats in determining the direct outcomes of brown trout – native fish interactions has not been experimentally evaluated. 2. An in‐lake enclosure experiment was used to evaluate the importance of structurally complex habitats in affecting the direct impacts of brown trout on a threatened galaxiid fish. Five Galaxias auratus and a single brown trout were added to enclosures containing one of three different habitat types (artificial macrophytes, rocks and bare silt substrate). The experiment also had control enclosures without brown trout. Habitat‐dependence of predation risk was assessed by analysis of G. auratus losses to predation, and stomach contents of remaining fish were analysed to determine if brown trout directly affect the feeding of G. auratus and whether this is also habitat‐dependent. 3. Predation risk of G. auratus differed significantly between habitat types, with the highest mortality in enclosures with only bare silt substrate and the lowest in enclosures containing artificial macrophytes. This result highlights the importance of availability of complex habitats for trout – native fish interactions and suggests that increasing habitat degradation and loss in fresh waters may exacerbate the direct impacts of introduced predators. 4. Stomach contents analyses were restricted to fish in enclosures with artificial macrophytes and rocks, as most fish were consumed in enclosures with brown trout and only bare silt substrate. These analyses suggest that brown trout do not directly affect the feeding of G. auratus in complex habitats, but it is still unknown whether its feeding is reduced if complex habitats are unavailable.     

Impact of habitat fragmentation on the genetics of populations in dendritic landscapes

1. The effect of habitat fragmentation on freshwater species has been addressed using brown trout Salmo trutta L. as a model species with a dendritic population structure. 2. Microsatellite loci were employed as molecular markers. Levels of gene flow and population subdivision were determined in more than 1200 brown trout individuals inhabiting four south European rivers with contrasting patterns of fragmentation, defined by the presence of barriers. 3. The genetic units in the four rivers were restricted by artificial barriers, and gene flow among samples within each river was associated with the level of fragmentation of the river. 4. Loss of genetic diversity and dislocation of the dendritic model have been detected in fragmented rivers. These results emphasise the importance of mitigating the impact of dams by constructing passages to restore gene flow along the river, for fish and other migratory species, as well as the need for caution in relation to stocking in isolated areas to avoid problems of inbreeding.     

Food habits of Coexisting Salmonines above and below Stronach Dam in the Pine River, Michigan

Although dam removal has become an increasingly popular tool for river restoration, there is limited knowledge regarding the ecological effects of dam removal. The purpose of our study was to document feeding habits of coexisting brook charr, brown trout, and rainbow trout above and below a dam that is in the process of a staged removal. Modification of sediment transport caused by Stronach Dam since 1912 has affected stream channel configuration, fish habitat, and many other physical and biological processes. In order to document salmonine feeding habits above and below the dam, we selected zones to represent downstream conditions and areas of river upstream of the dam that encompassed the original reservoir and a stretch of river further upstream that was not hydraulically influenced by the dam. Because physical habitat largely governs aquatic community composition in streams, we expected these effects to be reflected in the fish and macroinvertebrate communities. In particular, we expected limited prey availability and salmonine feeding in the impacted upstream and downstream zones characterized by fine substrate composition and greater macroinvertebrate diversity and salmonine feeding opportunities in the non-impacted zone characterized by coarse substrate. We also expected mean percent wet stomach content weights to be higher downstream, as other studies have documented an increase in piscivory on blocked migratory prey species downstream of dams. Contrary to expectations, the downstream zone of the river contained the highest abundance of drifting invertebrate taxa and, although differences in habitat occurred among the zones, the diversity of drifting macroinvertebrates and stomach contents of salmonines were similar throughout the river. Thus, in this case, the presence of altered habitat caused by a dam did not appear to negatively affect salmonine food habits. Consequently, we expect no major changes in salmonine food habits after the dam removal is completed.     

Wattled Curassows in Bolivia: abundance,habitat use,and conservation status

ABSTRACT The Wattled Curassow (Crax globulosa) is a globally threatened species restricted to humid várzea forest (seasonally flooded forest along white‐water rivers) in low‐lying regions of Amazonia. The Wattled Curassow were thought to have been extirpated from the Beni area of Bolivia, but were rediscovered near the Río Negro River in 2001. Our objectives were to determine the size of this population, examine habitat use, and based on our results, assess the conservation status of the Wattled Curassow. During July and August 2006, we used distance sampling to estimate the population density in our study area. We estimated the density of Wattled Curassows at 3.4 (95% CI: 1.4–8.1) individuals/km² and all were observed within 300 m of the river. Based on the availability of suitable habitat (18 km² of riparian várzea habitat within 300 m of the river), we estimated that the breeding population of Wattled Curassows in our study area consisted of 61 individuals. The specialized habitat requirements of the Wattled Curassow has important conservation implications because previous population estimates were based on the availability of várzea forest rather than the availability of water edge habitat within várzea forest. As a result, the current global population estimate (2500–9999) is higher than our estimate (500–2500) that takes the specialized habitat requirements of the Wattled Curassow into account. Given this low estimated population, along with the severely fragmented state of the few remaining populations and their dependence on a specialized and vulnerable habitat, we recommend that the status of the Wattled Curassow be upgraded from Vulnerable to Endangered.     

Spatial evaluation model for assessing and mapping impacts on threatened species in regions adjacent to Natura 2000 sites due to dam construction

The main purpose of this study was the development of an impact evaluation model to effectively assess and map possible ecological impacts due to a dam construction on habitats and species from the nearest Natura 2000 sites. A new approach has been developed in order to assess and map possible impacts on habitats due to a dam construction at both construction and operation phase. This methodology includes procedures in order to assess impacts and by calculating evaluation scores. Using Geographical Information Systems (GIS) evaluation scores were assigned to grouped habitat regions at construction and operation dam phase. The construction may affect the presence of the species Lutra at the site near the river but will have no effect at the area where the dam basin and the Natura 2000 site intersect. The other species are not expected to be affected from the dam construction. During the operation phase, the presence of water will influence species like Bombina in a very positive way. The dam operation itself will not have negative effects on the rest of habitats but due to the presence of water, factors like a possible increase on traffic and population may affect negatively the habitats especially near the village areas. The proposed methodology offers an alternative point of view on impact assessment and it is expected to serve as become a valuable tool for decision makers to evaluate potential impacts to threatened species and habitats due to a technical project at construction and operation phase.     

The impact of trout on galaxiid fishes in New Zealand

Compared with the effect of invaders on the native terrestrial fauna of New Zealand, interactions between native fishes and introduced trout (sports fish in the genera Salmo, Oncorhynchus and Salvelinus) are less well known and there have been fewer efforts to remedy their effects. Trout have caused widespread reductions in the distribution and abundance of native galaxiid fishes, a family dominated by threatened species. The effects have been most severe on non-diadromous species (those lacking a marine migratory stage), which are commonly eliminated from streams by trout. Galaxiid populations in lakes, and those with migratory ?whitebait? stages, have also been affected, but the extent of the impacts are less understood. The mechanisms controlling negative interactions between trout and native fish, and how the environment modifies those interactions, will be important for future management. Experiments and field comparisons indicate size-specific predation by trout is the main driver of negative interactions. Large trout (>150 mm long) do the greatest damage and small galaxiids (those with adult sizes <150 mm long) are the most at risk. The fry stage of non-diadromous galaxiids is particularly vulnerable. Despite galaxiid fry production in some trout-invaded reaches, often no fry survive making them population ?sinks? that must be sustained by adult dispersal. Trout are also associated with changes in galaxiid behaviour and alterations to stream benthic communities. However, effects on galaxiid growth and fecundity have been little studied. Recent work also indicates that habitat conditions, especially floods, low flows and natural acidity, can mediate trout?galaxiid interactions. We argue that managers should be more proactive in their response to the plight of galaxiids, and we identify avenues of research that will benefit native fish conservation activities in the future.     

Population status and ecology of the Salmo trutta complex in an Italian river basin under multiple anthropogenic pressures

Salmonids inhabiting Mediterranean rivers are of particular concern for biodiversity conservation, as they are threatened by various stressors, including habitat alterations, overfishing, climate change, and introgressive hybridization with alien species. In the Tiber River basin (Central Italy), genetic introgression phenomena of the native Salmo cettii with the non‐native Salmo trutta hinder the separate analysis of the two species, which are both included in the S. trutta complex. Little is known about the factors currently limiting the trout populations in this area, particularly with respect to climate change. With the intention of filling this gap, the aims of the current study were to (a) quantify changes in the climate and (b) analyze the distribution, status, and ecology of trout populations, in the context of changing abiotic conditions over the last decades. Fish stock assessments were carried out by electrofishing during three census periods (1998–2004, 2005–2011, and 2012–2018) at 129 sites. The trend over time of meteorological parameters provided evidence for increased air temperature and decreased rainfall. Multivariate analysis of trout densities and environmental data highlighted the close direct correlation of trout abundance with water quality, altitude, and current speed. Climate‐induced effects observed over time in the sites where trout were sampled have not yet led to local extinctions or distribution shifts, indicating a marked resilience of trout, probably due to the buffering effect of intrinsic population dynamics. Decreasing body conditions over time and unbalanced age structures support the hypothesis that variations in hydraulic regime and water temperature could overcome these compensatory effects, which may lead to a severe decline in trout populations in the near future. In a climate change context, habitat availability plays a key role in the distribution of cold‐water species, which often do not have the possibility to move upstream to reach their thermal optimum because of water scarcity in the upper river stretches.