Investigation of the microbial community structure and activity as indicators of compost stability and composting process evolution

In a bid to identify suitable microbial indicators of compost stability, the process evolution during windrow composting of poultry manure (PM), green waste (GW) and biowaste was studied. Treatments were monitored with regard to abiotic factors, respiration activity (determined using the SOUR test) and functional microflora. The composting process went through typical changes in temperature, moisture content and microbial properties, despite the inherent feedstock differences. Nitrobacter and pathogen indicators varied as a monotonous function of processing time. Some microbial groups have shown a potential to serve as fingerprints of the different process stages, but still they should be examined in context with respirometric tests and abiotic parameters. Respiration activity reflected well the process stage, verifying the value of respirometric tests to access compost stability. SOUR values below 1 mg O₂/g VS/h were achieved for the PM and the GW compost.     

Bulk density determination as a simple and complementary tool in composting process control

Ten composting facilities (CF) treating source-sorted organic fraction of municipal solid waste (OF) were sampled to study the relationship between the bulk density and the composting process (CP) development. Hundred and fourteen samples from different stages of the CP were considered (organic fraction, initial mixture, final decomposition, final maturation and compost), including the reject materials coming from the densimetric table at postprocessing. Total organic matter (TOM), moisture content (MC), wet bulk density and dry basis (BDd) were determined. Significant differences were detected for MC, TOM and BDd between some stages of the CP. The BDd increased along the CP while TOM decreased. Correlation studies showed a significant negative relationship between TOM and bulk density, especially BDd, during the CP, as a result of the biological activity. Moreover, a clear relationship was also found between TOM and BDd in samples related to reject materials. The results indicate that bulk density could be a simple and useful tool to evaluate the CP, in addition to the others parameters commonly used. At the same time, BDd could be an easy way to infer TOM lost within rejects.     

The Ornstein-Uhlenbeck process as a model for neuronal activity

Mean and variance of the first passage time through a constant boundary for the Ornstein-Uhlenbeck process are determined by a straight-forward differentiation of the Laplace transform of the first passage time probability density function. The results of some numerical computations are discussed to shed some light on the input-output behavior of a formal neuron whose dynamics is modeled by a diffusion process of Ornstein-Uhlenbeck type.Work supported in part by the Group for Mathematical Information Science (GNIM) of the National Council for Research     

Dehydrogenase based reagentless biosensor for monitoring phenylketonuria

Phenylketonuria (PKU) is a disease characterized by an inability to metabolize the amino acid l-phenylalanine. The resulting buildup leads to brain damage and ultimately mental retardation in children if their phenylalanine intake is not carefully controlled. The National Institutes of Health recently suggested that people with PKU monitor their phenylalanine levels throughout their life and be put on a low phenylalanine diet. As an alternative approach to analysis using blood, this paper describes the first reagentless dehydrogenase based sensor for the determination of phenylalanine in human urine. The clinical range of phenylalanine in human urine is 20-60mM for people with PKU. Although most clinical analysis is performed using blood, urine was chosen due to its high concentrations of phenylalanine in phenylketonurics, as well as its simple, safe, and painless collection. The sensor is comprised of a carbon paste electrode with nicotinamide adenine dinucleotide (NAD(+)), phenylalanine dehydrogenase (PDH), uricase, and an electron mediator, 3,4-dihydroxybenzaldehyde (3,4-DHB), all mixed into the paste. The electron mediator reacts with the electrode surface to produce two redox species, which catalytically oxidize NADH. The behavior of the electron mediator mixed into a carbon paste electrode has not been previously investigated. Cyclic voltammetry was used to characterize the sensor's response to NADH, and with the addition of PDH and NAD(+) to the paste, its response to phenylalanine in human urine. The limit of detection for phenylalanine is 0.5mM (S/N=3).     

Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis

Microbial succession during a laboratory-scale composting process of garbage was analysed by denaturing gradient gel electrophoresis (DGGE) combined with measurement of physicochemical parameters such as temperature, pH, organic acids, total dissolved organic carbon and water-soluble humic substance. From the temperature changes, a rapid increase from 25 to 58 degrees C and then a gradual decrease, four phases were recognized in the process as follows; mesophilic (S), thermophilic (T), cooling (C) and maturing (M). The polymerase chain reaction-amplified 16S rDNA fragments with universal (907R) and eubacterial (341F with GC clamp) primers were subjected to DGGE analysis. Consequently, the DGGE band pattern changed during the composting process. The direct sequences from DGGE bands were related to those of known genera in the DNA database. The microbial succession determined by DGGE was summarized as follows: in the S phase some fermenting bacteria, such as lactobacillus, were present with the existing organic acids; in the T phase thermophilic bacillus appeared and, after the C phase, bacterial populations were more complex than in previous phases and the phylogenetic positions of those populations were relatively distant from strains so far in the DNA database. Thus, the DGGE method is useful to reveal microbial succession during a composting process.     

Fecal hormones as a non-invasive population monitoring method for reindeer

Proper management of threatened species requires knowledge of population sizes and structures, however current techniques to gather this information are generally impractical and costly and can be stressful on the animals. Non-invasive methods that can produce high quality and accurate results are better alternatives. In winter 2010, we collected blood and fecal samples from 2 reindeer (Rangifer tarandus) populations (Kaamanen, Finland and Svalbard, Norway) to investigate the feasibility of using fecal progesterone metabolites to help estimate the reproductive status, the sex, and the age structures of the populations. We first examined the relationship between plasma progesterone and fecal progesterone metabolite concentrations. We further assessed whether fecal progesterone metabolite levels would clearly differ among calf, yearling, and adult and between pregnant and non-pregnant females. We quantified fecal progesterone metabolites (using enzyme immunoassay) and plasma progesterone (using radio immunoassay) of females and males of different ages from the 2 herds. We found in both populations that fecal progesterone metabolite levels reflected plasma progesterone concentrations. However, the range of fecal progesterone metabolite concentration was much wider in Finland than in Svalbard, possibly due to differences in diet or body condition. We determined a threshold value of 1.31 ng/ml plasma progesterone and 2025.93 ng/g dried fecal progesterone metabolites to identify pregnant reindeer from non-pregnant animals with 100% accuracy. We found a significant difference in fecal progesterone metabolite concentrations only between calves and yearlings/adults in Finland. We could not differentiate among males, non-pregnant adults, or calves of either sex; therefore identification of sex may have to rely on the use of DNA techniques. Our results suggest that hormone concentration, in combination with fecal DNA and pellet morphometry techniques, may provide important population parameters and is a valuable tool for the monitoring of reindeer and may have an application for threatened populations of woodland caribou throughout the winter and early spring. © 2011 The Wildlife Society.     

An inexpensive method for remotely monitoring nest activity

ABSTRACT.   In studies of avian nest success, investigators often face the difficult task of periodically checking nest status while at the same time limiting observer influence on nest survival. Remotely monitoring nests using temperature data loggers is one method that allows for continuous data capture regarding nest status (i.e., active vs. inactive) without the negative effects associated with repeated nest checks. We used small temperature data loggers (Thermochron iButtons) to remotely monitor nests of Long-billed Curlews ( Numenius americanus ) in northeastern Nevada. Data loggers programmed to record temperature at 10-min and 20-min intervals were placed in curlew nests. Data loggers were set to collect data throughout the nesting cycle to determine onset of incubation and timing of nest failure. On average, Long-billed Curlews began incubating approximately 3 d after the first egg was laid and onset of incubation coincided with the laying of the third egg. iButtons allowed us to determine when incubation was terminated in 17 of 23 unsuccessful Long-billed Curlew nests, including 13 of 17 depredated nests. The presence of iButtons in Long-billed Curlew nests did not affect daily survival rate, egg hatchability or rate of nest abandonment. iButtons are an efficient and practical means for remotely monitoring nests of large egg-laying birds, such as the Long-billed Curlew.     

Dehydrogenase activity as criterion for the determination of toxic effects on biological purification systems

Summary A method has been described which permits the quantitative and qualitative determination of the toxicity of effluents on biochemical purification and self-purification processes. The test is designed so that it can indicate whether or not adaptation to the toxic substances occurs and is based on comparing measurements of the reduction of the dehydrogenase activity of a system when treated with known toxic standards and effluents of unknown toxicity.The effect of known toxic standards, such as Ag⁺, Hg⁺⁺, Cr VI, formaldehyde, phenol and of some industrial effluents on the dehydrogenase activity, was determined under standardized conditions and the results are presented graphically. The method may be modified to suit particular local requirements. The advantage of this method is that it does not require dilution as is the case with the BOD bottle technique nor does it require expensive or elaborate equipment as the Warburg Apparatus and the method is suitable for series analysis.

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Zusammenfassung Es wurde eine Methode beschrieben zur Bestimmung der qualitativen und quantitativen Giftwirkung von Abwässern auf biochemische Reinigungs- und Selbstreinigungsprozesse.Die Methode gestattet ausserdem die Feststellung, ob Anpassung der biochemischen Aktivität an die toxischen Inhaltsstoffe möglich ist.Die Methode begründet sich auf die Bestimmung der Dehydrogenaseaktivität eines biochemischen Systems, das mit bekannten toxischen Standarden und Abwässern unbekannter Giftwirkung behandelt ist.Die Wirkung bekaanter Standarde wie Ag⁺, Hg⁺⁺, Cr^VI, Formaldehyd, Phenol und einiger industrieller Abwässer auf die Dehydrogenaseaktivität wurde unter Standardbedingungen bestimmt und die Ergebnisse graphisch dargestellt.Die Methode kann für besondere Erfordernisse modifiziert werden. Der Vorteil der Methode besteht darin, dass keine Verdünnung, wie dies beim BOD-Flaschentest erforderlich ist, stattfindet und dass keine kostspielige und komplizierte Apparatur erforderlich ist.

     

Survival and colonization of nematodes in a composting process

Nematodes are omnipresent in composts and are active in virtually all stages of the composting process. Major shifts in species composition, life strategies, and feeding behavior occur during the composting process. Due to the heat peak, nematodes can be virtually absent, but several taxa appear immediately when the temperatures drop. These comprise both taxa present before the heat peak and new taxa. However, it is not known how nematodes populate the compost. In this study, we aimed to assess the survival and colonization capacity of nematodes in compost. Our results showed that composting processes inaccessible to insects or not in contact with soil did not significantly influence nematode succession during composting. However, differences between treatments were found for some specific taxa (i.e., for Acrostichus sp., Neodiplogasteridae sp., Nygolaimoides sp., and Rhabditidae sp. 1), illustrating the importance of insects for the dispersal of nematodes to compost. Experiments in the lab with the blue bottle fly as a possible carrier demonstrated actual transport of nematodes isolated from compost by the fly (i.e., Halicephalobus cfr. gingivalis, Diploscapter coronatus, Diplogasteritus sp., Acrostichus sp., and Mesorhabditis sp.). Juveniles and dauer stages of Aphelenchoides sp., Panagrolaimus sp., and rhabditids survived an experimentally induced temperature peak, while members of Tylenchidae did not. In conclusion, our results indicate that the rapidly changing nematode community in compost is the result of both differential survival and colonization capacities.     

Application of thermal effusivity as a process analytical technology tool for monitoring and control of the roller compaction process

The aim of this study was to examine the relationship between physical characteristics of compacted ribbons and their thermal effusivity in an attempt to evaluate the feasibility of using effusivity for in-process monitoring of roller compaction. In this study, thermal effusivity, solid fraction, tensile strength, and Young's modulus of ribbons of microcrystal-line cellulose (MCC), anhydrous lactose, and placebo (PBO) formulations containing various ratios of MCC to anhydrous lactose (75∶20, 55∶40, 40∶55, and 20∶75) were determined at various compaction pressures (25–150 bars). The effusivity-square root of solid fraction relationship was linear for MCC and all the PBO formulations but was a second-order polynomial function for lactose. This could be due to the predominant deformation of lactose by brittle fracture, which might have significantly increased the number and size of contact points between particles, causing a change in thermal conductivity along with a density change. The effusivitytensile strength and effusivity-Young's modulus relationships were best described by logarithmic functions for MCC but were linear for lactose up to a compaction pressure of 65 bars. There were similar relationships for effusivity with tensile strength and Young's modulus for all PBO formulations except PBO IV, which might have been due to the deformation of lactose, the largest component in this formulation. Strong correlations between effusivity and physical properties of ribbons were established. Although these correlations were formulation-dependent, they demonstrate the possibility of using effusivity as a tool in monitoring roller compaction. Published: March 23, 2007     

Telomerase activity as a measure for monitoring radiocurability of tumor cells.

Radiotherapy plays a key role in the treatment of many tumors. It is difficult to determine what fraction of tumor cells survives after treatment with ionizing radiation. A convenient and sensitive biochemical assay could be efficacious in determining the potential success of radiotherapy. Since telomerase activity is frequently associated with the malignant phenotype, we sought to determine whether a correlation existed between ionizing radiation-induced cell killing and telomerase activity. We evaluated telomerase activity in two telomerase-positive and one telomerase-negative human cell line exposed to ionizing radiation. Telomerase activity was determined using a PCR-based telomeric repeat amplification protocol coupled with ELISA. We found ionizing radiation treatment to decrease the telomerase activity (in plateau phase cells of RKO, HeLa; and growing cells of RKO) in a dose-dependent manner, which correlated with cell death in in vitro tests as well as during tumor regression in nude mice. In contrast, growing HeLa cells after 24 h postradiation treatment showed an increase in telomerase activity, but there was no increase in the levels of mRNA of hTERT. To assess the sensitivity of the telomerase activity assay, we performed mixing experiments of HeLa and AG1522 cell extracts. These studies showed that telomerase activity could be detected in lysate equal to a single HeLa cell when mixed with 10,000 AG1522 cells. Our results indicate that even a few surviving neoplastic cells can be detected by telomerase activity assay. Therefore, detection of telomerase activity may be a useful monitor of radiotherapeutic efficacy and an early predictor of outcome.     

Enzymatic method for continuous monitoring of DNA polymerase activity

A simple and rapid method for the assay of DNA polymerase activity has been developed. The PPi formation in the DNA polymerase reaction is continuously monitored by a coupled enzymatic method (P. Nyrén and A. Lundin, 1985, Anal. Biochem. 151, 504-509) utilizing the enzymes ATP-sulfurylase and firefly luciferase. The method has been used for continuous monitoring of DNA synthesis in vitro, and the effect of an inhibitor, adriamycin, on the polymerase activity was studied. The assay is very sensitive and yields linear responses between 1.5 and 30 micrograms/ml of DNA polymerase (Micrococcus luteus) (2-40 pmol of PPi generated per minute).     

Flow cytometry as a method for assaying the biological activity of phytotoxins

A flow cytometric method has been developed for the qualitative and quantitative evaluation of the biological activities of phytotoxins from plant pathogenic fungi. The method utilized fresh wheat (Triticum aestivum L.) leaf protoplast preparations treated with purified phytotoxins, triticone A-B and triticone D. Subsequently, protoplasts were exposed to fluorescein diacetate, and analyzed by flow cytometry. Information acquired included fluorescence owing to esterase activity on fluorescein diacetate, and chlorophyll autofluorescence. Results indicate that triticone A-B has a rapid dose-dependent toxic effect on wheat protoplasts but triticone D has no toxic effect. This method can also yield information on the mechanism of action of phytotoxins that are relatively unstable or available only in small quantities.     

Sediment analysis as a method of monitoring industrial emissions

A number of investigations of river pollution in Austria are reported. Analysis of wastewater and river water was supplemented by investigations of sediments to characterize the influence of the different emission sources on the aquatic ecosystems. Examples of sediment investigations as tools for environmental monitoring are presented and the advantages of these methods are discussed.     

A novel method for activity monitoring in small non-human primates

Patterns of spontaneous activity are valuable reflections of well-being in animals and humans and, because of this, investigations have frequently incorporated some form of activity monitoring into their studies. It is widely believed that activity monitoring, alongside assessments of general behaviour, should be included in initial CNS safety pharmacology screening. As the number of marmoset studies having actimetry as their focus, or as an adjunct, is increasing, we wished to evaluate an alternative approach to those commonly used. The method is based on miniaturized accelerometer technologies, currently used for human activity monitoring.Actiwatch-Minis were used to monitor the activity of two groups of differently housed marmosets for 14 consecutive days. Group A consisted of four mixed-sex pairs of animals and group B comprised eight group-housed males. Activity profiles were generated for weekday and weekend periods. The devices captured quantifiable data which showed differences in total activity between the two differently housed groups and revealed intragroup variations in the temporal spread of activity between weekdays and weekends. The Actiwatch-Mini has been shown to generate retrospective, data-logged activity counts recorded from multiple animals in a single arena by means of non-invasive monitoring.     

Biosensors for process monitoring

Summary A short review about the biosensor research activities for bioprocess monitoring in the F.R.G. after its reunification is given. The principles of biosensor applications are presented. In situ sensors and sensors based on the principles of flow injection analysis are studied. Some applications of a four-channel enzyme thermistor, bio-field effect transistors, and immunoanalysis systems for real process monitoring are presented.     

X-ray computerized tomography as a new method for monitoring Amegilla holmesi nest structures, nesting behaviour, and adult female activity

Optimal foraging theory, specifically the marginal value theorem, predicts quicker leaving (shorter residence time) from poorer patches. One proximal mechanism for achieving the leaving is that exposure to lower-quality resources may trigger increased restlessness (proportion of time in locomotion). Which aspects of host quality, if any, affect restlessness was examined in females of the parasitoid wasp Nasonia vitripennis Walker (Hymenoptera: Pteromalidae). Females were individually exposed to a single host. Restlessness was greater both during and after exposure to a host, when the host was externally damaged vs. intact. Other aspects of host quality that affected restlessness were whether the host was parasitized and whether it was dead and unsuitable for offspring development. In contrast, the host's age and stage did not affect restlessness. Increased restlessness did not make females more willing to launch themselves across an inhospitable environment using their wings.