Structural development of p-carborane-based potent non-secosteroidal vitamin D analogs

Non-secosteroidal vitamin D receptor (VDR) ligands are promising candidates for many clinical applications. We recently developed novel non-secosteroidal VDR agonists based on p-carborane (an icosahedral carbon-containing boron cluster) as a hydrophobic core structure. Here, we report the design, synthesis and biological evaluation of carborane-based vitamin D analogs bearing various substituents at the diol moiety. Among the synthesized compounds, methylene derivative 31 exhibited the most potent vitamin D activity, which was comparable to that of the natural hormone, 1α,25(OH)₂D₃. This compound is one of the most potent non-secosteroidal VDR agonists reported to date, and is a promising lead for development of novel drug candidates.     

Impact of counteranion on the self-assembly of Cd(II)-containing MOFs: Syntheses, structures and photoluminescent properties

Three Cd(II)-containing metal-organic frameworks based on 1,1′-(1,5-pentanediyl)bis-1H-benzimidazole (pbbm), namely, , [CdSO₄(pbbm)₂]_n (2) and [CdI₂(pbbm)]₂ (3) are prepared systematically by using hydrothermal technique to examine the effects of counteranion on the topology of the resultant network. In complexes 1 and 2, pbbm acts as a bidentate ligand to link two Cd atoms to result in two different 1D chain structures. Complex 3 has a dimeric structure in which two Cd(II) cations are bridged by two pbbm ligands. The significant differences of these MOFs indicate that the counteranions have great impact on the assembling and structures of the resultant MOFs. The photoluminescent properties of these new materials have been studied in the solid state at room temperature. Further investigation reveals that their photoluminescent characteristics obtained from experiments accord with the computed parameters.     

Design and synthesis of tetraol derivatives of 1,12-dicarba-closo-dodecaborane as non-secosteroidal vitamin D analogs

Vitamin D receptor (VDR), a nuclear receptor for 1α,25-dihydroxyvitamin D₃ (1α,25(OH)₂D₃, 1), is a promising target for multiple clinical applications. We recently developed non-secosteroidal VDR ligands based on a carbon-containing boron cluster, 1,12-dicarba-closo-dodecaborane (p-carborane), and examined the binding of one of them to VDR by means of crystallographic analysis. Here, we utilized that X-ray structure to design novel p-carborane-based tetraol-type vitamin D analogs, and we examined the biological activities of the synthesized compounds. Structure–activity relationship study revealed that introduction of an ω-hydroxyalkoxy functionality enhanced the biological activity, and the configuration of the substituent significantly influenced the potency. Among the synthesized compounds, 4-hydroxybutoxy derivative 9a exhibited the most potent activity, which was equal to that of the secosteroidal vitamin D analog, 19-nor-1α,25-dihydroxyvitamin D₃ (2).     

Nitrogen‐Doped Wrinkled Carbon Foils Derived from MOF Nanosheets for Superior Sodium Storage

Preparation of hierarchical carbon nanomaterials from metal?organicframeworks (MOFs) offers immense potential in the improvement of energy density, tunability, and stability of functional materials for energy storage and conversion. How interconnected nitrogen (N)‐doped wrinkled carbon foils derived from MOF nanosheets can serve as high‐performance sodium storage materials due to their multiscale porous structure is shown here. The novel N‐doped carbon nanomaterials are synthesized through the pyrolysis of 2D Mn‐based MOFs, which are produced through the assistance of monodentate ligands to enable the planar growth of MOFs. Subsequent acid etching creates hierarchical pores and channels to allow rapid ion transport. The resulting materials achieve high‐rate capability (165 and 150 mA h g^?1 at current densities of 8 and 10 A g^?1, respectively) and high stability (capacity retention 72.8% after 1000 cycling at 1.0 A g^?1), when they are used as anode in sodium‐ion capacitors.     

Tertiary phosphines containing ortho-carborane as backbone. Some palladium(II) complexes

Coordination compounds of the type Pd(HPC)₂- X₂, Pd(DPC)X₂ and Pd(NPC)X₂, where X  Cl or Br and HPC = 1-diphenylphosphino-o-carborane; DPC = 1,2-bis(diphenylphoshino)-_o-carborane; and NPC= 1-bis(dimethylamminophosphino, 2-diphenylphosphino) -o-carborane, have been prepared and characterized by IR, Raman and electronic spectroscopy, magnetic and conductivity measurements, and elemental analyses. The compounds containing the monodentate HPC ligand possess a trans-planar structure, whereas for those containing the bidentate DPC and NPC ligands a cis-planar configuration was found. In all cases, the phosphorus atoms of the tertiary phosphine (HPC) and the ditertiary phosphines (DPC and NPC) are bonded to the palladium atom. The complex [Pd(HPC)Cl₂]₂ has also been prepared, and a halogen bridge dimeric structure is proposed on the basis of the IR and Raman spectra.     

Three zinc(II) complexes constructed from aromatic dicarboxylate and 1,4-bis((2-(pyridin-2-yl)-1H-imidazol-1-yl)methyl)benzene: Syntheses, crystal structures and luminescent properties

To investigate the effect of organic anions on the coordination frameworks, we synthesized three new complexes, namely, Zn(DPA)(bpimb)_0.5(H₂O) (1), Zn(BDC)(bpimb)_0.5 (2) and Zn₂(SDBA)₂(bpimb)·H₂O (3) (H₂DPA = diphenic acid; H₂BDC = isophthalic acid; H₂SDBA = 4,4′-dicarboxybiphenylsulfone), which were obtained by the reactions of 1,4-bis((2-(pyridin-2-yl)-1H-imidazol-1-yl)methyl)benzene (bpimb) as main ligand, and several aromatic polycarboxylate as organic anions with Zn(NO₃)₂·6H₂O. Single-crystal structure analysis shows that complex 1 is a one-dimensional chain structure, which is further interlinked into a higher-dimensional supramolecular framework by hydrogen-bonding interactions. In 2, BDC bridge Zn(II) atoms to give dimeric units, which are further linked by bpimb ligands to form sql nets. In 3, SDBA ligands and bpimb ligands connect Zn(II) ions into catenane-like two-dimensional layers. These catenane-like two-dimensional layers stack in an ABAB fashion to form a 3D supramolecular network. The distinct structures indicate three kinds of carboxylic ligands with different lengths and angles play fundamental roles in the formation of the final products. In addition, the luminescence measurements reveal that three complexes exhibit strong fluorescent emissions in the solid state at room temperature.     

Synthesis and structure–activity relationship of p-carborane-based non-secosteroidal vitamin D analogs

1α,25-Dihydroxyvitamin D₃ [1α,25(OH)₂D₃: 1] is a specific modulator of nuclear vitamin D receptor (VDR), and novel vitamin D analogs are therapeutic candidates for multiple clinical applications. We recently developed non-secosteroidal VDR agonists bearing a p-carborane cage (a carbon-containing boron cluster) as a hydrophobic core structure. These carborane derivatives are structurally quite different from classical secosteroidal vitamin D analogs. Here, we report systematic synthesis and activity evaluation of carborane-based non-secosteroidal vitamin D analogs. The structure–activity relationships of carborane derivatives are different from those of secosteroidal vitamin D derivatives, and in particular, the length and the substituent position of the dihydroxylated side chain are rather flexible in carborane derivatives. The structure–activity relationships presented here should be helpful in development of non-secosteroidal vitamin D analogs for clinical applications.     

Coordination chemistry of substituted [1,2,4]triazolo[1,5-a]pyrimidines with first-row transition-metal ions: Synthesis, spectroscopy and single-crystal structure analysis

A number of new coordination compounds with transition-metal salts and triazole-based heterocyclic ligands is described. The ligands used are disubstituted [1,2,4]triazolo[1,5-a]pyrimidines, with as substituents: ethyl, methyl and phenyl, and in addition a 2-methylthio-dimethyl ligand was used (sdmtp). To determine the structures of the coordination compounds in a number of cases 3D crystal structure determinations have been carried out, i.e. for [Fe(NCS)₂(detp)₃(H₂O)], [Co(NCS)₂(sdmtp)₂(H₂O)], [ZnBr₂(fmtp)₂], [Ni(NCS)₂(detp)₃(CH₃OH)] and [Fe(NCS)₂(fmtp)₂(H₂O)₂](fmtp). The latter compound is quite unusual as it contains an uncoordinated fmtp ligand in the crystal lattice with special packing features. The ligands and the coordination compounds have been further characterized by NMR, IR and LF spectra, as well as by C, H, N element analyses. The coordination around the metal varies from 4 (Zn), via 5 (Co) to 6 (for Ni and Fe).     

Trace element determination in humans

With the present study, we intend to verify the utility of hair as diagnostic tool for trace element analysis, to substitute, perhaps, conventional materials, such as blood serum. Blood and hair were collected from male individuals (n=107) aged 20–59 y. Determinations of Cu and Zn concentrations were performed with atomic absorption spectrometry. An influence of age on Zn in hair has been found, with significantly different values before and after age 30 y. There is no correlation between Cu concentrations in hair and in serum, and a positive one (r=0.3554,p<0.05) between Zn levels in hair and in serum. No association between Zn and Cu levels in hair has been demonstrated; on the contrary, these elements have a moderate positive correlation in serum (r=0.3586,p<0.01). The data indicate that hair may represent an additional analytical material for Cu and Zn to complement blood serum.     

Crystal structures of novel non-peptidic, non-zinc chelating inhibitors bound to MMP-12

Human macrophage elastase (MMP-12) plays an important role in inflammatory processes and has been implicated in diseases such as emphysema and chronic obstructive pulmonary disease (COPD). It is therefore an attractive target for therapeutic agents.As part of a structure-based drug design programme to find new inhibitors of MMP-12, the crystal structures of the MMP-12 catalytic domain (residues 106-268) complexed to three different non-peptidic small molecule inhibitors have been determined. The structures reveal that all three ligands bind in the S1′ pocket but show varying degrees of interaction with the Zn atom. The structures of the complexes with inhibitors CP-271485 and PF-00356231 reveal that their central morpholinone and thiophene rings, respectively, sit over the Zn atom at a distance of approximately 5 Å, locating the inhibitors halfway down the S1′ pocket. In both of these structures, an acetohydroxamate anion, an artefact of the crystallisation solution, chelates the zinc atom. By contrast, the acetohydroxamate anion is displaced by the ligand in the structure of MMP-12 complexed to PD-0359601 (Bayer), a potent zinc chelating N-substituted biaryl butyric acid, used as a reference compound for crystallisation. Although a racemate was used for the crystallisation, the S enantiomer only is bound in the crystal. Important hydrophobic interactions between the inhibitors and residues from the S1′ pocket are observed in all of the structures. The relative selectivity displayed by these ligands for MMP-12 over other MMP family members is discussed.     

Novel chelating agents as manganese and zinc fertilisers: characterisation,theoretical speciation and stability in solution

Abstract

Mineral, complex and chelated micronutrient fertilisers are widely used in agriculture. However, there have been few studies on manganese and zinc fertilisers. In fact, specific chelating agents to provide these micronutrients to plants have not been found, in contrast to iron. This work considers the interactions of novel and traditional ligands in micronutrient mixtures used in hydroponics and fertigation. Theoretical speciation studies comparing the stability in solution have been carried out to simulate the possible interactions that can affect Fe, Mn and Zn in aqueous formulations containing these micronutrients. Unknown stability constants of ligands with Zn and Mn have been determined. Also, theoretical speciation investigations in hydroponic conditions have been carried out. It has been found that the new chelating agents, IDHA and EDDS, and the poorly studied o,p-EDDHA, can be good alternatives to the traditional sources such as EDTA, HEEDTA and DTPA principally for Zn fertilisers. The Mn and Zn chelates with o,p-EDDHA and complexes with lignosulfonate and gluconate have also shown high stability in a hydroponic nutrient solution, maintaining more than 80% Mn in solution until pH 10. The presence of o,o-EDDHA/Fe³⁺ and o,p-EDDHA/Fe³⁺ enhances the stability of Zn in solution in the mixed fertilisers. More studies with substrates are necessary to confirm these results and to extend them to other agronomic conditions.     

Effect of Zinc Sulfate Fortificant on Iron Absorption from Low Extraction Wheat Flour Co-Fortified with Ferrous Sulfate

The co-fortification of wheat flour with iron (Fe) and zinc (Zn) is a strategy used to prevent these deficiencies in the population. Given that Zn could interact negatively with Fe, the objective was to assess the effect of Zn on Fe absorption from bread prepared with wheat flour fortified with Fe and graded levels of Zn fortificant. Twelve women aged 30–43 years, with contraception and a negative pregnancy test, participated in the study. They received on four different days, after an overnight fast, 100 g of bread made with wheat flour (70 % extraction) fortified with 30 mg Fe/kg as ferrous sulfate (A) or prepared with the same Fe-fortified flour but with graded levels of Zn, as zinc sulfate: 30 mg/kg (B), 60 mg/kg (C), or 90 mg/kg (D). Fe radioisotopes (⁵⁹Fe and ⁵⁵Fe) of high specific activity were used as tracers and Fe absorption iron was measured by the incorporation of radioactive Fe into erythrocytes. Results: The geometric mean and range of ±1 SD of Fe absorption were: A?=?19.8 % (10.5–37.2 %), B?=?18.5 % (10.2–33.4 %), C?=?17.7 % (7.7–38.7 %), and D?=?11.2 % (6.2–20.3 %), respectively; ANOVA for repeated measures F?=?5.14, p?<?0.01 (Scheffè’s post hoc test: A vs D and B vs D, p?<?0.05). We can conclude that Fe is well absorbed from low extraction flour fortified with 30 mg/kg of Fe, as ferrous sulfate, and up to 60 mg/kg of Zn, as Zn sulfate. A statistically significant reduction of Fe absorption was observed at a Zn fortification level of 90 mg Zn/kg.     

Three zinc-organic frameworks based on 1,4-benzenebis(thioacetic acid): Syntheses, crystal structures, and luminescent properties

A new flexible aromatic multithiocarboxylate ligand: 1,4-benzenebis(thioacetic acid) (H₂L), was synthesized and introduced to construct three interesting metal-organic frameworks (MOFs) with the photoluminescent properties. Three MOFs were characterized by the elemental analysis, infrared (IR) spectrum, and single crystal X-ray diffraction. [Zn₃L₃(2,2′-bipy)₂]_n (1) is a two-dimensional (2D) layered architecture that consists of the linear trinuclear units of Zn atoms. [ZnL(2,2′-bipy)(H₂O)]_n·0.7nH₂O (2) is a one-dimensional (1D) helical chain, which further forms a 2D structure with 30-membered ring with a size of 7.64 × 15.53 Å via O−H···O hydrogen bonds. [ZnL(phen)(H₂O)]_n·0.35nH₂O (3) presents a 2D supramolecular network through the O−H···O interactions. Their thermal and photoluminescent properties in solid state were given.     

Global diversity and balancing selection of 23 leading Plasmodium falciparum candidate vaccine antigens

Investigation of the diversity of malaria parasite antigens can help prioritize and validate them as vaccine candidates and identify the most common variants for inclusion in vaccine formulations. Studies of vaccine candidates of the most virulent human malaria parasite, Plasmodium falciparum, have focused on a handful of well-known antigens, while several others have never been studied. Here we examine the global diversity and population structure of leading vaccine candidate antigens of P. falciparum using the MalariaGEN Pf3K (version 5.1) resource, comprising more than 2600 genomes from 15 malaria endemic countries. A stringent variant calling pipeline was used to extract high quality antigen gene ‘haplotypes’ from the global dataset and a new R-package named VaxPack was used to streamline population genetic analyses. In addition, a newly developed algorithm that enables spatial averaging of selection pressure on 3D protein structures was applied to the dataset. We analysed the genes encoding 23 leading and novel candidate malaria vaccine antigens including csp, trap, eba175, ama1, rh5, and CelTOS. Our analysis shows that current malaria vaccine formulations are based on rare haplotypes and thus may have limited efficacy against natural parasite populations. High levels of diversity with evidence of balancing selection was detected for most of the erythrocytic and pre-erythrocytic antigens. Measures of natural selection were then mapped to 3D protein structures to predict targets of functional antibodies. For some antigens, geographical variation in the intensity and distribution of these signals on the 3D structure suggests adaptation to different human host or mosquito vector populations. This study provides an essential framework for the diversity of P. falciparum antigens to be considered in the design of the next generation of malaria vaccines.     

Metal Complexes of 3-Thiophene Carboxamides Containing a Pyridine Ring

Complexes of Zn(II), Cu(II) and Co(II) with either N-(2-methylpyridyl)-3-thienyl-alkyl-carboxamide or N-(2-pyridyl)-3-thienylalkyl-carboxamide groups have been prepared and characterized. Crystal structures of ten new complexes are reported and discussed. N-(2-Methylpyridyl)-3-thienyl-alkyl-carboxamide exhibits both uni- and bidentate behavior. With all ligands, bidentate complexation is through the carbonyl oxygen and pyridine nitrogen atoms (O, N) and the amide nitrogen atom remains protonated. The electrochemical behavior and the infrared spectra of selected complexes are discussed.     

Crystal structures and catalytic activities of Zn(II) compounds containing btp ligands

The structures of new compounds containing Zn(II) ions and btp (2,6-bis(N′-1,2,4-triazolyl)pyridine) ligands have been determined. With coordinating chloride and bromide anions, Zn(II) produces chains 2 and 3 containing C-H?X(Cl or Br) weak interactions to build crystal structures and they are face-to-face aligned. With non-coordinating anions, Zn(II) produces monomeric compounds 4 and 5 containing H-bonds between anions and water ligands and face-to-face π-π interactions to build crystal structures. The previously reported polymeric compound 1 containing [Zn(NO₃)(H₂O)₂(btp)₂]⁺ units bridged by btp ligands was found to carry out the catalytic transesterification of a range of esters with methanol at room temperature under mild conditions, whereas it did not catalyze the ring opening of epoxide (easier reaction) with methanol. These results indicate that the polymeric compound 1 shows selective reactivity. In addition, the catalyst 1 has shown even better catalytic activity than the corresponding Zn(NO₃)₂ salt.     

The role of molecular modelling and simulation in the discovery and deployment of metal-organic frameworks for gas storage and separation*

ABSTRACT

Metal-organic frameworks (MOFs) are highly tuneable, extended-network, crystalline, nanoporous materials with applications in gas storage, separations, and sensing. We review how molecular models and simulations of gas adsorption in MOFs have informed the discovery of performant MOFs for methane, hydrogen, and oxygen storage, xenon, carbon dioxide, and chemical warfare agent capture, and xylene enrichment. Particularly, we highlight how large, open databases of MOF crystal structures, post-processed to enable molecular simulations, are a platform for computational materials discovery. We discuss how to orient research efforts to routinise the computational discovery of MOFs for adsorption-based engineering applications.     

Adducts of europium β-diketonates with nitrogen p,p′-disubstituted bipyridine and phenanthroline ligands: Synthesis, structural characterization, and luminescence studies

Europium complexes featuring fluorinated β-diketonate ligands [thenoyltrifluoroacetone (tta), 4,4,4-trifluoro-1-phenyl-1,3-butanedione (btfac), and 1,1,1,5,5,5-hexafluoro-2,4-pentanedionate (hfac)] and nitrogen p,p′-disubstituted bipyridine and phenanthroline ligands [4,4′-dimethoxy-2,2′-bipyridine (dmbipy) and 4,7-dimethyl-1,10-phenanthroline (dmphen)] were synthesized. Their structures were determined by single crystal X-ray diffraction. Octacoordinate complexes were obtained using trifluorinated tta and btfac, while nonacoordinated complexes were produced using hexafluorinated hfac. The differences in coordination number and bond lengths of these complexes are rationalized in terms of the electronic and steric features of the ligands. UV excitation of the complexes led to red luminescence characteristic of trivalent europium ion. The high overall quantum yields observed for the europium complexes bearing hfac and dmbipy or dmphen ligands are rationalized in terms of the relatively high ligand-to-metal energy transfer efficiencies.     

Structure-Based Virtual Screening and Discovery of New PPARδ/γ Dual Agonist and PPARδ and γ Agonists

Peroxisome proliferator-activated receptors (PPARs) are involved in the control of carbohydrate and lipid metabolism and are considered important targets to treat diabetes mellitus and metabolic syndrome. The available PPAR ligands have several side effects leading to health risks justifying the search for new bioactive ligands to activate the PPAR subtypes, in special PPARδ, the less studied PPAR isoform. Here, we used a structure-based virtual screening protocol in order to find out new PPAR ligands. From a lead-like subset of purchasable compounds, we identified 5 compounds with potential PPAR affinity and, from preliminary in vitro assays, 4 of them showed promising biological activity. Therefore, from our in silico and in vitro protocols, new PPAR ligands are potential candidates to treat metabolic diseases.     

Synthesis and crystal structures of five-coordinated β-pyrrole tetra(phenyl/cyano) substituted zinc(II)-tetraphenylporphyrins

Crystal structures of a series of 2,3,5,10,12,13,15,20-octaphenylporphinato zinc(II) complexes with varying axial ligands have been examined to elucidate the role of fifth ligand on the stereochemistry of the porphyrin macrocycle. The nonplanarity of the macrocycle varies in the order, ZnOPP < ZnOPP(pyridine) < ZnOPP(H₂O). The electron deficient porphyrin complex of five-coordinated Zn(II), ZnTPP(CN)₄(CH₃OH) showed enhanced nonplanarity of the macrocycle and it is less than that of ZnOPP(H₂O)·TCE complex. Normal coordinate structure decomposition analysis of the out-of-plane displacement of the porphyrin ring in these structures revealed negligible wave distortion in planar four-coordinated ZnOPP and saddle, ruffled and domed distortions in other five-coordinated Zn(II)-porphyrins. The pronounced distortion of the macrocyclic ring in these structures is possibly due to the axial ligand, solvate and/or intermolecular interactions compared to steric crowding of the peripheral substituents.