Conservation of invertebrate biodiversity on a mountain in a global biodiversity hotspot,Cape Floral Region

Mountains present particular challenges for biodiversity conservation. Table Mountain is a significant mountain in a global biodiversity hotspot, the Cape Floristic Region. It has outstanding angiosperm diversity and endemism. Yet, aerial and foliage invertebrates in the area have been poorly studied, despite their importance as pollinators and predators. These plant and invertebrate assemblages are under great pressure from human disturbance. Aerial and foliage invertebrates were sampled with a range of techniques. Sites were chosen to make comparisons between vegetation structure and type, elevation and aspect. In total, 216 species from 63 families and 14 orders were recorded. Vegetation structure (fynbos or forest) and elevation were the most important environmental variables for both aerial and foliage invertebrates. Peak time for aerial invertebrate abundance was spring and summer in the fynbos and spring in the forests, while the foliage invertebrates showed very little seasonal variation. There was no correlation between the diversity of aerial and foliage invertebrates. When these results were compared with others on epigaeic invertebrates, it became clear that epigaeic and aerial invertebrates are not correlated, while epigaeic and foliage invertebrates were only partially correlated, but not sufficiently so to consider one as a reliable estimator of the other. The management pointer from this study is that sites at all elevations are vital for the conservation of biodiversity on Table Mountain. Both the aerial and epigaeic/foliage invertebrate assemblages will need to be monitored separately to maintain the mountain’s conservation status.     

Impacts of urbanization in a biodiversity hotspot: Conservation challenges in Metropolitan Cape Town

The City of Cape Town (City) covers 2460 km² in the southwestern corner of the Cape Floristic Region biodiversity hotspot. Established in 1654, by 1700 there were no animals larger than 50 kg within 200 km of the City. However, apart from an appreciation that timber and firewood were becoming scarce, it was only in the 1930s that the first farm near Cape Point was set aside for conservation. Table Mountain was declared a National Monument in 1958, while it was largely covered by pine and gum plantations. Conservation of the montane areas thereafter expanded, whereas the lowlands were largely ignored, except for a few bird sanctuaries. Only in 1982 was the plight of the lowlands highlighted. Although ad hoc conservation planning was undertaken subsequently, 1997 saw the first priority categorization and conservation plan. The current situation is perilous: a huge effort will be required to meet basic conservation targets for the lowland vegetation types and threatened species. Local and international partners and funders will be key to achieving this. In eight of the City's 19 national vegetation types the minimum conservation targets are not achievable. Of the 3250 plant species estimated to occur in the City, 13 are extinct and 319 are threatened according to the IUCN Red List: this is 18% of the threatened Red List species in South Africa. Now for the first time, implementation is being attempted holistically across the metropole with discussion between internal City and external stakeholders to implement the conservation plan. However, the interim plans towards achieving this — that 60% of the unproclaimed target is secured by 2014, requires that over 40 km² be conserved per annum. This leaves 340 km² that should be secured by 2020 when projections from City spatial growth indicate that the last critical remnants will be urbanized.     

Causes of plant diversification in the Cape biodiversity hotspot of South Africa

The Cape region of South Africa is one of the most remarkable hotspots of biodiversity with a flora comprising more than 9000 plant species, almost 70% of which are endemic, within an area of only ± 90,000 km2. Much of the diversity is due to an exceptionally large contribution of just a few clades that radiated substantially within this region, but little is known about the causes of these radiations. Here, we present a comprehensive analysis of plant diversification, using near complete species-level phylogenies of four major Cape clades (more than 470 species): the genus Protea, a tribe of legumes (Podalyrieae) and two speciose genera within the iris family (Babiana and Moraea), representing three of the seven largest plant families in this biodiversity hotspot. Combining these molecular phylogenetic data with ecological and biogeographical information, we tested key hypotheses that have been proposed to explain the radiation of the Cape flora. Our results show that the radiations started throughout the Oligocene and Miocene and that net diversification rates have remained constant through time at globally moderate rates. Furthermore, using sister-species comparisons to assess the impact of different factors on speciation, we identified soil type shifts as the most important cause of speciation in Babiana, Moraea, and Protea, whereas shifts in fire-survival strategy is the most important factor for Podalyrieae. Contrary to previous findings in other groups, such as orchids, pollination syndromes show a high degree of phylogenetic conservatism, including groups with a large number of specialized pollination syndromes like Moraea. We conclude that the combination of complex environmental conditions together with relative climatic stability promoted high speciation and/or low extinction rates as the most likely scenario leading to present-day patterns of hyperdiversity in the Cape.     

Current and future threats to plant biodiversity on the Cape Peninsula, South Africa

The biodiversity of the Cape Peninsula (49127 ha in extent) has been considerably affected by various factors since European settlement in 1652. Urbanization and agriculture have transformed 37% of the original area of natural vegetation. Lowland vegetation types have been worst affected, with almost half of the transformation occurring in one of the 15 recognized vegetation types. Vegetation at high altitudes has been little affected by urbanization and agriculture, but alien trees and shrubs are now threatening biodiversity in these areas. Of the area not affected by urbanization and agriculture 10.7% is currently under dense stands (>25% canopy cover) of alien plants and another 32.9% is lightly invaded. Dense stands of Acacia cyclops, the most widespread invader, cover 2510 ha, 76% of the total area under dense alien stands. This paper assesses the impacts of these factors on aspects of the plant biodiversity of the area, namely, the distribution of major vegetation types and of endemic, rare and threatened plant taxa and of taxa in the Proteaceae (a prominent element in almost all communities, taken as an indicator of overall plant biodiversity).Possible future impacts on biodiversity are assessed by considering the effects of several scenarios involving increased urbanization and changes to alien plant control strategies and further spread over the next 50–100 years. The worst-case scenario for urbanization sees the area under natural vegelation reduced to 12163 ha (39.3% of its extent in 1994, or 24.8% of its original extent). Under this scenario almost a quater of the 161 endemic, rare and threatened (special) taxa are confined totally to urban areas; 57.4% of the known localities of these taxa, and 40.1% of the remaining localities of Proteaceae taxa are transformed. Dense alien stands currently affect 29.8% of the localities of special taxa known from herbarium records and 8.4% of these taxa currently occur only in areas at present affected by aliens. Clearing all dense stands would result in 62.9% of special taxa having less than half of their known localities affected (49.1% at present). Under this scenario, 92% of Proteaceae taxa have more than 75% of their localities unaffected by aliens. If clearing is confined to specific areas (the Cape Peninsula Protected Natural Environment or all publicly-owned land) and the aliens spread further outside these areas, the area of natural vegetation remaining shrinks (to 82.4% of the current extent if control is confined to public land). The further losses in biodiversity associated with these scenarios are described. If control programmes collapse and all potentially invadable land is occupied by dense alien stands, only 407 ha of natural vegetation would remain (1.5% of the current extent).The probability of the various scenarios materializing is discussed. To minimize further losses in biodiversity it is essential that: (1) a major initiative is launched immediately to clear (firstly) the 10184 ha of lightly invaded vegetation and then the 3313 ha of densely invaded vegetation; (2) no urban development be permitted within the boundaries of the Cape Peninsula Protected Natural Environment; (3) a systematic programme of prescribed burning (linked to the alien control programme) is initiated; and (4) contingency measures are implemented to improve the status of seriously threatened taxa, habitats and vegetation types.     

Agricultural mosaics maintain significant flower and visiting insect biodiversity in a global hotspot

Agricultural expansion requires mitigation to conserve biodiversity and maintain functional interactions across the transformed mosaic. Conservation outside protected areas (PAs) means providing increased spatial opportunities for populations to survive over the long-term. Here we assess the capacity of agricultural mosaics for maintaining indigenous biodiversity against the benchmark levels in neighbouring PAs. We do this in three geographical areas in the major biodiversity hotspot, the Cape Floristic Region. We focus on two functionally related groups, indigenous flowers and their associated native insects, to assess the biodiversity value of certain components of agricultural mosaics. These components include agriculturally disturbed land, semi-transformed, disturbed land, and remnant patches of natural land, as well as adjacent PAs as reference sites. Overall, species richness across the agricultural mosaics outside PAs was similar to that within PAs for insects, although more variable for plants. Nevertheless, sites outside PAs still retained great diversity of flowering plants. Across the agricultural mosaic, sites shared 20–38 % of their insect species, and 12–28 % of plant species, indicating substantial species turnover. Each particular agricultural component retained species not sampled elsewhere in the landscape, indicating that habitats outside PAs can make a significant contribution to the compositional biodiversity of an area. Our findings are positive for biodiversity conservation across these agricultural mosaics, with these semi-natural components within the production landscape, in effect, extending the size of the PAs for many species. Conservation planning should recognize the value of such agricultural mosaics.     

Comparative effects of urban and agricultural land transformation on Odonata assemblages in a biodiversity hotspot

Rivers of the Cape Floristic Region (CFR) biodiversity hotspot are threatened by land transformation. This region is a centre of endemism for many taxa, including Odonata. These insects are highly sensitive to changes in physical habitat structure, which makes them good bioindicators, and this led to the development of the Dragonfly Biotic Index (DBI). We investigated the effects of local agricultural and urban land transformations on Odonata species richness, assemblage composition and DBI scores in three CFR rivers. A total of 48 sites were selected and categorized as natural, agricultural or urban land use. Adult male Odonata and four environmental variables were recorded over two seasons. Land transformation significantly influenced Odonata assemblage composition but did not always significantly reduce species richness. Average vegetation height also affected Odonata assemblage composition and decreased species richness. Agricultural and urban sites had Odonata assemblages differing from those in the natural areas. Agricultural and urban local land use types reduced opportunities for some endemic species but provided for the persistence and establishment of widespread, generalist species, as indicated by great changes in DBI scores. Mitigating the adverse influences of land transformation through establishment of protected areas is essential for the conservation of rare taxa, particularly in an area with a high number of endemic species.     

A phylogenetic perspective on the evolutionary processes of floristic assemblages within a biodiversity hotspot in eastern Asia

Abstract How to maximize the conservation of biodiversity is critical for conservation planning, particularly given rapid habitat loss and global climatic change. The importance of preserving phylogenetic diversity has gained recognition due to its ability to identify some influences of evolutionary history on contemporary patterns of species assemblages that traditional taxonomic richness measures cannot identify. In this study, we evaluate the relationship between taxonomic richness and phylogenetic diversity of angiosperms at genus and species levels and explore the spatial pattern of the residuals of this relationship. We then incorporate data on historical biogeography to understand the process that shaped contemporary floristic assemblages in a global biodiversity hotspot, Yunnan Province, located in southwestern China. We identified a strong correlation between phylogenetic diversity residuals and the biogeographic affinity of the lineages in the extant Yunnan angiosperm flora. Phylogenetic diversity is well correlated with taxonomic richness at both genus and species levels between floras in Yunnan, where two diversity centers of phylogenetic diversity were identified (the northwestern center and the southern center). The northwestern center, with lower phylogenetic diversity than expected based on taxonomic richness, is rich in temperate‐affinity lineages and signifies an area of rapid speciation. The southern center, with higher phylogenetic diversity than predicted by taxonomic richness, contains a higher proportion of lineages with tropical affinity and seems to have experienced high immigration rates. Our results highlight that maximizing phylogenetic diversity with historical interpretation can provide valuable insights into the floristic assemblage of a region and better‐informed decisions can be made to ensure different stages of a region's evolutionary history are preserved.     

Bioindicators of edge effects within Atlantic Forest remnants: Conservation implications in a threatened biodiversity hotspot

Aim

Deforestation of the Atlantic Forest of eastern Paraguay has been recent but extensive, resulting in a fragmented landscape highly influenced by forest edges. We examined edge effects on multiple dimensions of small mammalian diversity.

Location

Forest fragments of eastern Paraguayan Atlantic Forest.

Methods

We trapped small mammal species at different distances from the forest edge (DTE) in reserves and estimated multiple dimensions of diversity per site. Similarity analysis identified species clusters that best described the patterns of diversity across reserves. Multivariate ordination and linear mixed models were used to determine the influence of DTE on various dimensions of small mammal diversity.

Results

There was an increase in richness and abundance along a DTE gradient, and remnants with higher edge:area ratios showed higher richness and abundance, independent of remnant size. Species at edges were generalists, open-habitat species or exotic species (spillover effect). We found higher phylogenetic diversity and functional richness and divergence towards forest edges. Spillover of non-forest and invasive species best explained richness, generalist forest species best explained total abundance, abundance of Hylaeamys megacephalus best explained diversity and evenness metrics and the presence of Marmosa paraguayana best explained various phylogenetic diversity models. None of the models that included megafauna or social factors were shown to be important in explaining patterns as a function of DTE.

Main Conclusions

We found strong support for a spillover effect and mixed support for complementary resource use and enhanced habitat resources associated with ecotones. Generalists characterized edge assemblages but not all generalists were equivalent. Edges showed more phylogenetically and functionally distinct assemblages than the interior of remnants. There was a conservation of functional diversity; however, open-habitat species, habitat generalists and exotic species boosted diversity near forest edges. Mechanisms governing diversity along forest edges are complex; disentangling those mechanisms necessitates the use of multiple dimensions of diversity.     

Reserve scenarios for the Cape Peninsula: high-, middle- and low-road options for conserving the remaining biodiversity

The Cape Peninsula, a landscape of profound scenic beauty, is also botanically exceptionally species-rich and has high concentrations of both endemic and threatened plant species. Alien invasive trees, urban expansion and growing tourism are impacting increasingly on the landscape and biota. Three reserve scenarios were modelled, the primary objective being to maximize the conservation of biodiversity in a manner which takes both cost and efficiency into account. A comprehensive plant species database, an endemic animali species database, a vegetation type database, land-tenure and land-use data were used in this process. The resolution of all databases was by 1 km cells. The first scenario investigated the effectiveness of the existing reserve system in conserving the Peninsula's biodiversity. The second assessed the benefit of adding all publicly owned and to the existing reserves. In scenario three, a reserve-selection algorithm was applied to conserve those plant species outside existing reserves at least once. Where endemic animal species, and areas with high concentrations of threatened and endemic plant species were not adequately conserved, extra cells were added for their inclusion. Finally, one cell was added to cater for one inadequately conserved vegetation type. Fifty-one cells were needed to satisfy the requirements stipulated for scenario three. Analyses showed that 22% of plant species have all their records within existing reserves. Adding all public land improves the status to 43% with 97% having >50% of their records included in reserves. In scenario three, these figures are 32 and 87% respectively. In terms of animal species, four species are unconserved in scenario one, two in scenario two, and all species are conserved in scenario three. We conclude that scenarios two (including all public areas) and three (iterative selection to conserve each species once) provide practicable options for conserving the Peninsula's remaining biodiversity.     

Conservation status and community structure of cliff-nesting raptors and ravens on the Cape Peninsula,South Africa

We detail the sizes, spatial distributions and trends in nest site selection of cliff-nesting raptor and raven populations resident in the mountains of the Cape Peninsula, South Africa. We also assess the conservation value of these populations to inform the future management of the newly-established Table Mountain National Park (TMNP), and examine the structure and interrelations within the raptor community. The combined number, dispersion and density of nests (n = 96 nests, mean inter-nest distance = 0.59km, density = 30.0 pairs/100km²) are comparable with those of high-density raptor populations studied elsewhere in Africa and the world. Densities of Verreauxs' Eagle Aquila verreauxii (n = 2, 12.01km, 0.6 pairs/100km², respectively) and Jackal Buzzard Buteo rufofuscus (n = 9, 4.63, 2.8 pairs/100km²), are low, Rock Kestrel Falco rupicolus (n = 44, 1.75km, 13.8 pairs/100km²) high and Peregrine Falcon Falco peregrinus (n = 19, 3.13km, 5.9 pairs/100km²) exceptional, relative to populations of the same or similar species in other areas. There are no comparable data for White-necked Raven Corvus albicollis (n = 22, 3.22km, 6.9 pairs/100km²). All species combined, and Peregrines in particular, significantly prefer high cliffs from the available habitat. Peregrines generally dominate the other species, may affect cliff site selection and dispersion in the rest of the community, and tend to locate their nests close to those of White-necked Ravens. Numbers of Verreauxs' Eagle are lower than recent historical levels, perhaps because key prey populations are depleted. Any future recovery of this large predator could subtly affect the entire assemblage. This cliff-nesting raptor community is a significant asset of the TMNP, and should be considered in management decisions taken in the Park, particularly those concerning the regulation of leisure activities in the vicinity of nesting areas.     

Exploring the pteridophyte flora of the Eastern Afromontane biodiversity hotspot

In this review, we explore our current understanding of the fern and lycophyte diversity occurring in the Eastern Afromontane Biodiversity Hotspot (EABH). The review explores the species diversity of this region in the context of the Afromadagascan pteridophyte diversity based on an exhaustive species list assembled in the synopsis of Afromadagascan pteridophytes published by Roux in 2009. The list was updated by incorporating recent progress in our understanding of the taxonomy and phylogeny of these plants. Evidence for a distinct pteridophyte flora occurring in the East African mountain region was discovered using ordination and clustering analyses. This EABH floras shares links to other Afromadagascan pteridophyte floras such as the one in the tropical lowland forests of central and western Africa. These floras share the dominance of species that preferably occur in humid climates whereas other African pteridophyte floras tend to contain a higher proportion of xeric adapted ferns. The phylogenetic composition of the EABH pteridophyte flora was assessed by comparing global versus local proportion of orders, families, and genera. This analysis revealed distinct patterns that are partly caused by the radiation of Blotiella and Triplophyllum besides selective colonization of species pre-adapted to Afromadagascan climates. In situ speciation in the East African tropical mountains may have contributed to the global diversity of widespread genera such as Asplenium and Pteris. In summary, this is the first comprehensive attempt to assess the pteridophyte diversity of the East African mountains providing the framework for future studies on their conservation, ecology, and evolution.     

Conservation challenges in a threatened hotspot: agriculture and plant biodiversity losses in Baja California,Mexico

Modern agricultural practices pose serious threats to biodiversity worldwide. Species losses from habitat conversion are well documented, but indirect impacts such as reduced water availability to adjacent ecosystems are less known. San Quintín is an important agricultural valley in the mediterranean climate region of Baja California, Mexico. The region is also a hotspot of plant species richness and endemism. Plant species in the region are here analyzed by comparison of the contemporary flora to historical botanical collections to identify extirpations. Historical collections indicate that habitat loss to agriculture has been a direct cause of species losses. As importantly, the unsustainable extraction of groundwater has apparently led to salt water intrusion, resulting in the loss of 22 native plant taxa, including 13 rare plants. Seventy-eight percent of all the vernal pool taxa have been lost from the flora (including 85 % of the rare taxa) and 11 % of plants of riparian and pond habitat (including 25 % of the rare taxa) are no longer found in the region. Unsustainable agricultural practices continue to threaten fragile coastal ecosystems and are a serious challenge to current and future conservation efforts. Ironically, these same practices frequently result in abandonment of cultivated areas. Owing to indirect impacts, conservation of biodiversity and large-scale agricultural operations are even less compatible on a regional scale than indicated by direct impacts. It is vital that sustainable agricultural practices be adopted locally and globally to avoid further losses of biodiversity.     

Distinct edaphic habitats are occupied by discrete legume assemblages with unique indicator species in the Cape Peninsula of South Africa

Aims The Cape Peninsula is a small area (471 km 2) situated on the south-westernmost tip of the Core Cape Subregion (CCR) of South Africa. Within the Cape Peninsula, Fabaceae are the third most species-rich plant family (162 species) and they have the second highest number of endemic species after the Ericaceae. However, legumes are not the dominant taxa in the vegetation. They tend to show patchy distributions within the landscape and different species assemblages usually occupy particular niches at any given locality. The present study undertook to establish if edaphic factors influence legume species distribution in the Cape Peninsula and to determine the key indicator species for the different assemblages.Methods Soils from 27 legume sites, spanning all major geological substrates of the Cape Peninsula, were analysed for 31 chemical and physical properties. Legume species present at each site were recorded and a presence/absence matrix was generated. Cluster analysis and discriminant function analysis (DFA) were run to group the sites based on overall similarity in edaphic characteristics and to identify the soil parameters contributing towards discriminating the groups. Canonical correspondence analysis (CCA) was used to test for a correlation between legume species compositions and edaphic factors. The strength of the association between legume species and site groupings based on edaphic properties was assessed using indicator species analysis.Important findings Based on similarity in overall soil characteristics, the sites formed three clusters: one comprising sites of sandstone geology, one with dune sand sites and the third cluster comprising sites of both shale and granite geologies (hereafter referred to as soil types). The DFA confirmed the distinctness of these clusters and the CCA showed a significant correlation between legume species composition and edaphic factors. The key edaphic parameters were clay content, iron (Fe), potassium (K), sulphur (S) and zinc (Zn). These findings reveal that the Cape Peninsula is edaphically heterogeneous and edaphically distinct habitats contain discrete legume species assemblages that can be distinguished by unique indicator species. Furthermore, multiple soil parameters, rather than a single parameter, are involved. Therefore, edaphic factors play a significant role in driving the distribution of legume species in the Cape Peninsula and discrete legume species assemblages occupy distinct habitats.     

Ophiuroid biodiversity patterns along the Antarctic Peninsula

Benthic ecological surveys using standardized methods are crucial for assessing changes associated with several threats in the Southern Ocean. The acquisition of data on assemblage structure over a variety of spatial scales is important to understand the variation of biodiversity patterns. During the ANT XXIX/3 (PS81) expedition of RV Polarstern, three different regions at the tip of the Antarctic Peninsula were sampled: the northwestern Weddell Sea, the Bransfield Strait, and the northern boundary of the South Shetland Archipelago in the Drake Passage. The aim of this study was to characterize the distribution and biodiversity patterns of ophiuroid assemblages in these regions and depths. We quantified different community parameters in terms of the number of species, abundance, and biomass. Additionally, we calculated various components of species diversity (alpha, beta, and gamma diversity) over the three regions. Based on the benthic surveys, we collected 3331 individuals that were identified to species level (17 species). Overall, species diversity, as measured based on rarefaction, species richness and evenness estimators, was higher in the Bransfield Strait compared to the Weddell Sea and Drake Passage. Two deep stations in the Weddell Sea showed high dominance only of Ophionotus victoriae. Significant differences in the patterns of alpha diversity were found among the regions but not between depth zones, whereas beta diversity showed no differences. Regarding the resemblance among the ophiuroid assemblages of each region, there was a significant gradient from east to west with a maximum distance between the stations in the Drake Passage and the Weddell Sea. This study provides a baseline for detecting potential effects related to climate change, and it furnishes a basis for the implementation of monitoring schemes of Antarctic assemblages.