Influence of arbuscular mycorrhizal mycelial exudates on soil bacterial growth and community structure

Plant root systems colonized by arbuscular mycorrhizal (AM) fungi have previously been shown to influence soil bacterial populations; however, the direct influence of the AM extraradical mycelium itself on bacterial growth and community composition is not well understood. In this study, we investigated the effects of exudates produced by AM extraradical mycelia on the growth and development of an extracted soil bacterial community in vitro. The chemical composition of the mycelial exudates was analysed using proton nuclear magnetic resonance spectrometry. Following the addition of exudates to a bacterial community extracted from soil, bacterial growth and vitality were determined using a bacterial vitality stain and fluorescence microscopy. Changes in community composition were also analysed at various times over the course of 3 days by terminal restriction fragment length polymorphism analysis, in combination with cloning and sequencing of 16S rRNA genes. Mycelial exudates increased bacterial growth and vitality and changed bacterial community composition. Several Gammaproteobacteria, including a taxon within the Enterobacteriaceae, increased in frequency of occurrence in response to AM mycelial exudates. This study is the first attempt to identify carbohydrates from the extraradical mycelium of an AM fungus, and demonstrates the direct effects of mycelial exudates on a soil bacterial community.     

大气CO2浓度升高对农田土壤微生物及其相关因素的影响

综述了大气CO2浓度升高条件下,农田土壤微生物区系、土壤呼吸、土壤微生物生物量;植物-微生物共生体--内生菌根、根瘤及其与农田土壤微生物活动相关因素发生的变化。该方面的研究虽然受实验条件限制,在国内外开展研究的持续时间较短,但现有的研究表明,大气CO2浓度升高主要通过影响植物生长而间接影响农田土壤微生物活性。     

Roots and fungi accelerate carbon and nitrogen cycling in forests exposed to elevated CO2

A common finding in multiple CO(2) enrichment experiments in forests is the lack of soil carbon (C) accumulation owing to microbial priming of 'old' soil organic matter (SOM). However, soil C losses may also result from the accelerated turnover of 'young' microbial tissues that are rich in nitrogen (N) relative to bulk SOM. We measured root-induced changes in soil C dynamics in a pine forest exposed to elevated CO(2) and N enrichment by combining stable isotope analyses, molecular characterisations of SOM and microbial assays. We find strong evidence that the accelerated turnover of root-derived C under elevated CO(2) is sufficient in magnitude to offset increased belowground inputs. In addition, the C losses were associated with accelerated N cycling, suggesting that trees exposed to elevated CO(2) not only enhance N availability by stimulating microbial decomposition of SOM via priming but also increase the rate at which N cycles through microbial pools.     

大兴安岭典型永久冻土土壤细菌群落组成和多样性

【背景】土壤微生物是土壤生物中的重要成分,参与了土壤生态系统中关键的生物化学循环过程。但是关于寒温带多年冻土土壤微生物的研究还比较薄弱。【目的】探究大兴安岭多年冻土土壤中微生物的多样性和种群结构。【方法】利用MiSeq高通量测序技术对黑龙江大兴安岭地区呼中保护区落叶松冻土和樟子松林冻土土壤样品进行测序。【结果】在落叶松冻土和樟子松林冻土土壤中,相对丰度最高的优势菌群的组成基本一致,在门水平有疣微菌门(Verrucomicrobia)、变形菌门(Proteobacteria)、酸杆菌门(Acidobacteria)、浮霉菌门(Planctomycetes)、绿菌门(Chlorobi)、Parcubacteria、放线菌门(Actinobacteria)、拟杆菌门(Bacteroidetes)、厚壁菌门(Firmicutes)、芽单胞菌门(Gemmatimonadetes)10个细菌门类,其中,疣微菌门(Verrucomicrobia)在樟子松林土壤中的相对丰度较多,变形菌门(Proteobacteria)在落叶松林土壤中的相对丰度较多。通过α多样性分析可知,落叶松冻土土壤微生物的群落多样性高于樟子松林冻土,而且两者的细菌群落组成与结构差异性较大。【结论】为深入认识大兴安岭多年冻土区的土壤微生物群落结构组成以及影响因素提供数据支撑。     

小麦根系分泌物对黄瓜生长及土壤真菌群落结构的影响

以黄瓜为受体,以不同化感效应(促进/抑制)小麦品种为供体,采用PCR-DGGE技术,研究了小麦根系分泌物及伴生小麦对黄瓜生长及土壤真菌群落结构的影响.结果表明： 在处理第6天和第12天,化感促进效应小麦根系分泌物分别显著提高了黄瓜幼苗株高和茎粗;在处理第18天,化感促进和抑制效应小麦根系分泌物均显著提高了黄瓜幼苗株高;在处理第6天,不同化感效应小麦根系分泌物均显著降低了黄瓜幼苗根际土壤真菌群落条带数、Shannon指数及均匀度指数,有苗对照(W)显著高于无苗对照(Wn);在处理第18天,各处理的真菌群落结构条带数、Shannon指数及均匀度指数均显著高于无苗对照(Wn).伴生化感抑制效应小麦显著降低了黄瓜根际土壤真菌群落Shannon指数和均匀度指数,说明小麦根系分泌物及伴生小麦改变了土壤真菌群落结构.DGGE图谱及其主成分分析结果表明,伴生不同化感效应小麦对土壤真菌群落结构影响较大.     

大气CO2增加对土壤脲酶、磷酸酶活性的影响

1　引　　言自 19世纪 70年代工业化革命以来 ,由于化石燃料燃烧、林草地开垦农用等已引起ＣＯ2 大气排放的不断增加 ,可能使未来的 5 0～ 10 0年内 ,全球大气ＣＯ2 将增加 1倍左右 .许多研究证明 ,大气ＣＯ2 增加可提高植物生长代谢水平[1,8] .其结果是植物代谢分泌物的种类和数量发生变化 ,由植物光合作用强度或速率变化引起的植物枯枝落叶质量也会改变 ,二者均可能在经泌入土壤或凋落进入土壤分解后 ,对植物着生的土壤环境产生直接或间接的影响 .植物对大气ＣＯ2 增加的响应途径还有根圈微生物种群 (植物根圈大量活性Ｃ组分将直接作为微…     

复合群落土壤微生物和酶活性对大气CO2浓度和温度升高的响应

应用自控、封闭、独立的生长室系统,研究川西亚高山林线复合群落根际、非根际土壤微生物数量以及根际、非根际土壤酶活性对大气CO2浓度升高(环境CO2浓度+350(±25)μmol.mol-1,EC)和温度升高(环境温度+2.0(±0.5)℃,ET)及其两者同时升高(ECT)的响应。结果表明:(1)与对照(CK)相比,EC、ET和ECT处理能够增加土壤根际微生物数量,但不同微生物种类对EC、ET和ECT的反应有所差异。(2)不同种类的根际土壤酶对EC、ET和ECT的响应不同。(3)与CK相比,EC、ET和ECT的非根际土壤微生物数量以及非根际土壤酶活性均无显著提高。(4)EC、ET和ECT处理对复合群落土壤微生物总数的根际效应明显;除ET处理的转化酶为负根际效应,其余处理的过氧化氢酶,脲酶及转化酶均表现为正根际效应。     

岷江冷杉根际土壤微生物对大气CO2浓度和温度升高的响应

应用自控、封闭、独立的生长室系统,研究了川西亚高山岷江冷杉根际土壤微生物数量对大气CO₂浓度升高 (环境CO₂浓度+350(±25)μmol·mol^-1,EC)和温度升高(环境温度+2.2(±0.5)℃,ET)及其CO₂浓度和温度同时升高 (ECT)的响应.结果表明,1)同对照(CK)相比,在6月、8月和10月,EC处理的根际细菌数量分别增加了35%、164%和312%,ET处理增加了30%、115%和209%,而EC和ET处理对根际放线菌和根际真菌数量影响不显著;ECT处理的根际放线菌数量分别增加了49%、50%和96%,根际真菌数量增加了151%、57%和48%,而ECT对根际细菌数量影响不显著.2)3种处理对非根际土壤微生物数量影响均不显著.3)在EC、ET和ECT处理下,微生物总数的根际效应明显,其R/S值分别为1.93、1.37和1.46(CK的R/S值为0.81).     

林冠受损对小坑林场土壤固碳微生物群落结构的影响

【目的】以典型南亚热带常绿阔叶林小坑林场土壤为研究对象,模拟2008年冰雪灾害对森林造成的损伤设置实验,分析不同林冠开度和凋落物输入量对土壤固碳微生物群落结构的影响。【方法】试验设置对照(CN)、损伤处理+移除处理枝叶(TR)、损伤处理+保留处理枝叶(TD)、未处理+添加处理枝叶(UD)4个处理,受损处理一年后,采用MiSeq高通量测序技术对土壤固碳微生物的功能基因cbbL进行测序分析。【结果】通过生物信息学及统计学分析表明,森林林冠损伤后林冠开度和凋落物输入量增加,导致土壤固碳微生物种群数量降低,多样性增加,群落结构也受到影响,亚硝化螺菌属(Nitrosospira)明显增加,成为优势种群,而原来的优势菌群慢生根瘤菌属(Bradyrhizobium)明显减少。主成分分析(PCA)表明,与对照相比,其他3个样地的土壤固碳微生物结构均发生明显改变。【结论】模拟林冠损伤处理一年后,凋落物的大量骤然输入和林冠开度增大提高了土壤固碳微生物群落多样性,但降低了其种群数量,影响了土壤固碳微生物群落结构,这为进一步的研究提供了依据。     

开放式空气CO2浓度增高对土壤线虫影响的研究现状与展望

大气CO2浓度增高会对生态系统产生一系列的影响,这些影响在某种程度上受到土壤动物区系的调节,本文通过论述大气CO2浓度增高对不同类型土壤中和不同生态系统中土壤线虫产生的影响,阐明了用土壤线虫作为指示生物来研究生态系统变化的意义,并提出了今后针对大气CO2浓度增高这一现象应着重围绕土壤线虫及土壤动物系优先开展的几方面研究,从而更好地指示整个生态系统的变化情况,为有效地管理农田生态系统提供依据。     

Canopy development of a model herbaceous community exposed to elevated atmospheric CO2 and soil nutrients

To test the prediction that elevated CO₂ increases the maximum leaf area index (LAI) through a stimulation of photosynthesis, we exposed model herbaceous communities to two levels of CO₂ crossed with two levels of soil fertility. Elevated CO₂ stimulated the initial rate of canopy development and increased cumulative LAI integrated over the growth period, but it had no effect on the maximum LAI. In contrast to CO₂, increased soil nutrient availability caused a substantial increase in maximum LAI. Elevated CO₂ caused a slight increase in leaf area and nitrogen allocated to upper canopy layers and may have stimulated leaf turnover deep in the canopy. Gas exchange measurements of intact communities made near the time of maximum LAI indicated that soil nutrient availability, but not CO₂ enrichment, caused a substantial stimulation of net ecosystem carbon exchange. These data do not support our prediction of a higher maximum LAI by elevated CO₂ because the initial stimulation of LAI diminished by the end of the growth period. However, early in development, leaf area and carbon assimilation of communities may have been greatly enhanced. These results suggest that the rate of canopy development in annual communities may be accelerated with future increases in atmospheric CO₂ but that maximum LAI is set by soil fertility.     

Fungal community composition and metabolism under elevated CO2 and O3

Atmospheric CO₂ and O₃ concentrations are increasing due to human activity and both trace gases have the potential to alter C cycling in forest ecosystems. Because soil microorganisms depend on plant litter as a source of energy for metabolism, changes in the amount or the biochemistry of plant litter produced under elevated CO₂ and O₃ could alter microbial community function and composition. Previously, we have observed that elevated CO₂ increased the microbial metabolism of cellulose and chitin, whereas elevated O₃ dampened this response. We hypothesized that this change in metabolism under CO₂ and O₃ enrichment would be accompanied by a concomitant change in fungal community composition. We tested our hypothesis at the free-air CO₂ and O₃ enrichment (FACE) experiment at Rhinelander, Wisconsin, in which Populus tremuloides, Betula papyrifera, and Acer saccharum were grown under factorial CO₂ and O₃ treatments. We employed extracellular enzyme analysis to assay microbial metabolism, phospholipid fatty acid (PLFA) analysis to determine changes in microbial community composition, and polymerase chain reaction–denaturing gradient gel electrophoresis (PCR–DGGE) to analyze the fungal community composition. The activities of 1,4-β-glucosidase (+37%) and 1,4,-β-N-acetylglucosaminidase (+84%) were significantly increased under elevated CO₂, whereas 1,4-β-glucosidase activity (−25%) was significantly suppressed by elevated O₃. There was no significant main effect of elevated CO₂ or O₃ on fungal relative abundance, as measured by PLFA. We identified 39 fungal taxonomic units from soil using DGGE, and found that O₃ enrichment significantly altered fungal community composition. We conclude that fungal metabolism is altered under elevated CO₂ and O₃, and that there was a concomitant change in fungal community composition under elevated O₃. Thus, changes in plant inputs to soil under elevated CO₂ and O₃ can propagate through the microbial food web to alter the cycling of C in soil.     

Root controls on soil microbial community structure in forest soils

We assessed microbial community composition as a function of altered above- and belowground inputs to soil in forest ecosystems of Oregon, Pennsylvania, and Hungary as part of a larger Detritus Input and Removal Treatment (DIRT) experiment. DIRT plots, which include root trenching, aboveground litter exclusion, and doubling of litter inputs, have been established in forested ecosystems in the US and Europe that vary with respect to dominant tree species, soil C content, N deposition rate, and soil type. This study used phospholipid fatty-acid (PLFA) analysis to examine changes in the soil microbial community size and composition in the mineral soil (0–10 cm) as a result of the DIRT treatments. At all sites, the PLFA profiles from the plots without roots were significantly different from all other treatments. PLFA analysis showed that the rootless plots generally contained larger quantities of actinomycete biomarkers and lower amounts of fungal biomarkers. At one of the sites in an old-growth coniferous forest, seasonal changes in PLFA profiles were also examined. Seasonal differences in soil microbial community composition were greater than treatment differences. Throughout the year, treatments without roots continued to have a different microbial community composition than the treatments with roots, although the specific PLFA biomarkers responsible for these differences varied by season. These data provide direct evidence that root C inputs exert a large control on microbial community composition in the three forested ecosystems studied.     

Effects of sieving, drying and rewetting upon soil bacterial community structure and respiration rates

Soil microcosm studies often require some form of soil homogenisation, such as sieving, to provide a representative sample. Frequently, soils are also homogenised following drying and are then rewetted, yet little research has been done to understand how these methods impact upon microbial communities. Here we compared the molecular diversity and functional responses of intact cores from a Scottish grassland soil with homogenised samples prepared by drying, sieving and rewetting or freshly sieving wet soils. Results showed that there was no significant difference in total soil CO₂-C efflux between the freshly sieved and intact core treatments, however, respiration was significantly higher in the dried and rewetted microcosms. Molecular fingerprinting (T-RFLP) of bacterial communities at two different time-points showed that both homogenisation methods significantly altered bacterial community structure with the largest differences being observed after drying and rewetting. Assessments of responsive taxa in each treatment showed that intact cores were dominated by Acidobacterial peaks whereas an increased relative abundance of Alphaproteobacterial terminal restriction fragments were apparent in both homogenised treatments. However, the shift in community structure was not as large in the freshly sieved soil. Our findings suggest that if soil homogenisation must be performed, then fresh sieving of wet soil is preferable to drying and rewetting in approximating the bacterial diversity and functioning of intact cores.     

大气二氧化碳浓度升高对植物根际微生物及菌根共生体的影响

综述了大气CO2浓度升高条件下,植物根际土壤环境、根际土壤微生物和植物菌根形成的变化趋势等方面的研究进展,CO2浓度升高,运转到根系的碳水化合物增加,根际环境、根际微生物活性、微生物群落结构以及菌根共生体的形成发生变化．提出在CO2浓度升高条件下,根际微生物和菌根真菌群落的变化对植物群落和陆地生态系统碳动态的调节是今后的研究趋向。     

Changes of bacterial communities in the rhizosphere of sugarcane under elevated concentration of atmospheric CO2

It is believed that climate change will influence most of interactions that sustain life on Earth. Among these, the recruitment exerted by plants in their roots vicinity can change, leading to differential assemblages of microbiomes in the rhizosphere. We approached this issue analyzing the variations in the composition of bacterial communities in the rhizosphere of sugarcane cultivated under two concentrations of atmospheric CO₂ (350 or 700 ppm). In addition to the analysis of bacterial community, the use of DNA‐SIP allowed the comparison of bacterial groups assimilating roots exudates (based on ¹³C‐labeled DNA) in both conditions, in a period of 8 days after the CO₂ pulse. The separation of ¹³C‐DNA indicated the low but increasing frequency of labeling in the rhizosphere, as averages of 0.6, 2.4 and 5.0% of total DNA were labeled after 2, 4, and 8 days after the ¹³CO₂ pulse, respectively. Based on large‐scale sequencing of the V6 region in the gene 16S rRNA, we found an increase in the bacterial diversity in the ¹³C‐DNA along the sampling period. We also describe the occurrence of distinct bacterial groups assimilating roots exudates from sugarcane cultivated under each CO₂ concentration. Bacilli, Gammaproteobacteria, and Clostridia showed high affinity for the C‐sources released by sugarcane under 350 ppm of CO₂, while under elevated concentration of CO₂, the assimilation of roots exudates was prevalently made by members of Bacilli and Betaproteobacteria. The communities became more similar along time (4 and 8 days after CO₂ pulse), in both concentrations of CO₂, electing Actinobacteria, Sphingobacteriia, and Alphaproteobacteria as the major cross‐feeders on sugarcane exudates. In summary, we described the bacterial groups with higher affinity to assimilate roots exudates in the rhizosphere of sugarcane, and also demonstrated that the rhizosphere community can be differentially assembled in a future scenario with increased contents of CO₂.     

低分子有机酸对土壤中菲降解及细菌群落结构的影响

多环芳烃是一类普遍存在于环境中的持久性有机污染物,其通过食物链进入生态系统,直接危害人类健康和整个生态系统的安全。为探讨低分子有机酸对土壤中菲降解及细菌群落结构的影响,通过室内培养的方式研究了在添加不同种类有机酸处理下第0—180天土壤中菲含量的变化状况,并采用高通量Illumina Miseq技术分析了土壤细菌群落种类和数量的变化特征。结果表明,低分子有机酸对于土壤中菲的降解有明显的促进作用,由一级动力学方程得出乙酸对菲降解的促进作用最明显。从细菌群落结构来看,土壤细菌的数量及其多样性或许不是导致土壤菲降解的主要因素,反而特定的菲降解菌的丰度对菲降解有重要影响。添加低分子有机酸减少了细菌OTU数及细菌菌群多样性,但增加了PAHs降解菌的丰度。随着时间推移细菌总OTU数呈现下降趋势,独有种类数均呈现出先增长后下降的趋势。检测到了6种典型的菲降解菌,分别为:Bacillus、鞘氨醇单胞菌属、Massilia、Azospirillum、Burkholderia-paraburkholderia、红球菌。研究结果可为多环芳烃污染土壤的植物修复提供基础数据和科学参考。     

Genotypic variation in source and sink traits affects the response of photosynthesis and growth to elevated atmospheric CO2

This study aimed to understand the response of photosynthesis and growth to e-CO₂ conditions (800 vs. 400 μmol mol⁻¹) of rice genotypes differing in source–sink relationships. A proxy trait called local C source–sink ratio was defined as the ratio of flag leaf area to the number of spikelets on the corresponding panicle, and five genotypes differing in this ratio were grown in a controlled greenhouse. Differential CO₂ resources were applied either during the 2 weeks following heading (EXP1) or during the whole growth cycle (EXP2). Under e-CO₂, low source–sink ratio cultivars (LSS) had greater gains in photosynthesis, and they accumulated less nonstructural carbohydrate in the flag leaf than high source–sink ratio cultivars (HSS). In EXP2, grain yield and biomass gain was also greater in LSS probably caused by their strong sink. Photosynthetic capacity response to e-CO₂ was negatively correlated across genotypes with local C source–sink ratio, a trait highly conserved across environments. HSS were sink-limited under e-CO₂, probably associated with low triose phosphate utilization (TPU) capacity. We suggest that the local C source–sink ratio is a potential target for selecting more CO₂-responsive cultivars, pending validation for a broader genotypic spectrum and for field conditions.     

土壤抑真菌作用与细菌群落结构的关系

自然清洁土壤所具有的抑真菌作用,是健康土壤的一种自然属性,也是土壤质量的重要指标之一,对控制农作物土传病原真菌的爆发具有积极的生态学意义.本试验以中国科学院沈阳生态实验站近10年未受农药和肥料影响的撂荒地土壤作为自然清洁土壤样品,通过高温（对照、100 ℃、110 ℃、121 ℃）处理得到具有不同抑真菌作用的土壤模型,采用PCR DGGE(变性梯度凝胶电泳)方法对上述土壤样品的细菌群落结构进行分析.结果表明：土壤抑真菌作用与土壤细菌群落结构紧密相关;对照清洁土壤抑真菌作用最强,处理后土壤细菌群落结构偏离自然清洁土壤愈远,土壤抑真菌能力愈差;DGGE特异性条带切胶测序结果表明,Sphingomonas asaccharolytica、Nitrospira sp.、Hyphomicrobiaceae sp.、Bacillus megaterium和Micrococcus sp.可能与土壤抑真菌作用密切相关.