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1.
Elisa Berdalet Francesc Peters V. Lila Koumandou Cristina Roldn
scar Guadayol Marta Estrada 《Journal of phycology》2007,43(5):965-977
Turbulence has been shown to alter different aspects of the physiology of some dinoflagellates. The response appears to be species‐specific and dependent on the experimental design and setup used to generate small‐scale turbulence. We examined the variability of the response of three dinoflagellate species to the turbulence, following the same experimental design used by Berdalet (1992) on Akashiwo sanguinea (Hirasaka) Ge. Hansen et Moestrup (=Gymnodinium nelsonii G. W. Martin). In all experiments, turbulence was generated by an orbital shaker at 100 rpm, which corresponded on bulk average, to dissipation rates (ε, quantified using an acoustic Doppler velocimeter) of ≈2 cm2 · s?3. Turbulence did not appreciably affect Gymnodinium sp., a small dinoflagellate. However, Alexandrium minutum Halim and Prorocentrum triestinum J. Schiller exhibited a reduced net growth rate (33% and 28%, respectively) when shaken during the exponential growth phase. Compared to the still cultures, the shaken treatments of A. minutum and P. triestinum increased the mean cell volume (up to 1.4‐ and 2.5‐fold, respectively) and the mean DNA content (up to 1.8‐ and 5.3‐fold, respectively). Cultures affected by turbulence recovered their normal cell properties when returned to still conditions. The swimming speed of the cells exposed to agitation was half that of the unshaken ones. Overall, the response of A. minutum and P. triestinum was similar, but with lower intensity, to that observed previously on A. sanguinea. We found no clear trends related to taxonomy or morphology. 相似文献
2.
Gisela Llaveria Rosa Isabel Figueroa Esther Garcés Elisa Berdalet 《Journal of phycology》2009,45(5):1106-1115
Decreased net population growth rates and cellular abundances have been observed in dinoflagellate species exposed to small‐scale turbulence. Here, we investigated whether these effects were caused by alterations in the cell cycle and/or by cell mortality and, in turn, whether these two mechanisms depended on the duration of exposure to turbulence. The study was conducted on the toxic dinoflagellate Alexandrium minutum Halim, with the same experimental design and setup used in previous studies to allow direct comparison among results. A combination of microscopy and Coulter Counter measurements allowed us to detect cell mortality, based on the biovolume of broken cells and thecae. The turbulence applied during the exponential growth phase caused an immediate transitory arrest in the G2/M phase, but significant mortality did not occur. This finding suggests that high intensities of small‐scale turbulence can alter the cell division, likely affecting the correct chromosome segregation during the dinomitosis. When shaking persisted for >4 d, mortality signals and presence of anomalously swollen cells appeared, hinting at the activation of mechanisms that induce programmed cell death. Our study suggests that the sensitivity of dinoflagellates to turbulence may drive these organisms to find the most favorable (calm) conditions to complete their division cycle. 相似文献
3.
《Harmful algae》2017
Despite the potential negative human health, ecological and economic impact, the ecology of harmful benthic dinoflagellate blooms remains largely unknown. This is probably due to the complex interactions among biotic and abiotic drivers that influence blooms, but also to the difficulty in quantifying cell abundance in a comparable way over large spatial and temporal scales. One of the recognized priorities for bHABs (benthic Harmful Algal Blooms) assessment is developing and standardizing methods that can provide comparable data. In this context, the Benthic Dinoflagellates Integrator (BEDI), a new non-destructive quantification method for benthic dinoflagellate abundances, has been developed and tested within the present study. The rationale behind the BEDI standard assessment method is that mechanical resuspension of cells enables the quantification of abundances as cells per unit of seabed surface area (i.e. cells mm−2) or as Potentially Resuspended cells per unit of volume (PRcells ml−1), by integrating both cells in the biofilm and those in the surrounding water. Estimations of Ostreopsis performed with BEDI method are independent of the substratum (i.e. macroalgal species) or the dominant ecosystem (i.e. algal forests or turfs, seagrass beds, coral reefs) and potentially allow the comparison of benthic dinoflagellate blooms over broad temporal and spatial scales. The first application of the BEDI method, presented in this study, gave encouraging results: the characterization of blooms of Ostreopsis cf. ovata at three sites in the NW Mediterranean Sea is consistent with results derived from the other commonly applied methods. Quantification of the ratio between abundances of cells in the biofilm and in the surrounding water was calculated for the first time per unit of seabed surface area, demonstrating that the highest abundances of cells (the stock), and therefore the associated risk for human health, are in the biofilm. For risk assessment purposes, conversion values for commonly used monitoring alert thresholds of Mediterranean Ostreopsis blooms are provided. 相似文献
4.
《Harmful algae》2017
Concern regarding Benthic Harmful Algal Blooms (BHABs) is increasing since some harmful benthic species have been identified in new areas. In the Mediterranean basin, the most common harmful benthic microalgae are Ostreopsis cf. ovata and Prorocentrum lima, which produce palytoxin-like compounds and okadaic acid respectively, and the need to implement monitoring activities has increased. However, a general agreement on appropriate strategies (e.g. sampling season, definition of alarm thresholds, etc.) is still lagging behind, especially for P. lima, whose proliferation dynamics are still poorly known. 相似文献
5.
Genetic sequences from dinoflagellates offer valuable information regarding taxonomies, phylogenies and population genetics that generally require the growth of these organisms in culture. We have developed a quick and simple method to obtain small and large subunit ribosomal gene sequences from dinoflagellates using single cells. This method, based on freeze–thaw cell lysis and a simple two‐step polymerase chain reaction, provides template for sequencing in 6–8 h. We have sequenced five dinoflagellate species, including unculturable Dinophysis and Ceratium species, using fresh and frozen samples. 相似文献
6.
《Harmful algae》2017
A new species of toxic benthic dinoflagellate is described based on laboratory cultures isolated from two locations from Brazil, Rio de Janeiro and Bahia. The morphology was studied with SEM and LM. Cells are elliptical in right thecal view and flat. They are 37–44 μm long and 29–36 μm wide. The right thecal plate has a V shaped indentation where six platelets can be identified. The thecal surface of both thecal plates is smooth and has round or kidney shaped and uniformly distributed pores except in the central area of the cell, and a line of marginal pores. Some cells present an elongated depression on the central area of the apical part of the right thecal plate. Prorocentrum caipirignum is similar to Prorocentrum lima in its morphology, but can be differentiated by the general cell shape, being elliptical while P. lima is ovoid. In the phylogenetic trees based on ITS and LSU rDNA sequences, the P. caipirignum clade appears close to the clades of P. lima and Prorocentrum hoffmannianum. The Brazilian strains of P. caipirignum formed a clade with strains from Cuba, Hainan Island and Malaysia and it is therefore likely that this new species has a broad tropical distribution. Prorocentrum caipirignum is a toxic species that produces okadaic acid and the fast acting toxin prorocentrolide. 相似文献
7.
Laura Joensuu Zeynep Pekcan‐Hekim Noora Hellén Jukka Horppila 《Freshwater Biology》2013,58(10):1997-2006
- Small‐scale turbulence is a key factor in increasing encounter rates but also dispersing prey patches of planktonic organisms and can thus contribute to their distribution. Our hypotheses were that turbulence can (i) disturb the vertical refuge use of fourth instar Chaoborus flavicans larvae and (ii) also disperse them horizontally. Both were tested experimentally, across a gradient of turbulence.
- The vertical experiments were conducted in 46‐L cylinders, providing the larvae a vertical refuge by darkening the bottom layer. The horizontal experiments were conducted in a 200‐L aquarium, providing them a horizontal refuge by darkening one end of the aquarium.
- With both set‐ups, two light treatments were tested: uniform darkness as a control and the bottom layer of the cylinder or either end of the aquarium darkened to provide a refuge. In addition to non‐turbulent treatment, five different root‐mean‐square (RMS) velocities were generated, ranging from 0.6 to 10.2 cm s?1 in the vertical and to 10.9 cm s?1 in the horizontal experiment.
- Increasing turbulence had a significant effect on the distribution of C. flavicans larvae in both vertical and horizontal directions and increased the proportion of larvae in the non‐preferred illuminated environment. In the vertical direction, the proportion of larvae in the refuge decreased linearly with increasing turbulence, showing a decline from 84% under calm conditions to 61% at the highest RMS velocity (10.2 cm s?1). The effect of turbulence was more prominent in the horizontal direction; without turbulence, 86% of the larvae occupied the refuge, but the proportion declined to 32% at 5.4 cm s?1 RMS velocity. In experiments with uniform darkness, the distribution of chaoborids was not affected by turbulence either in the vertical or in the horizontal direction.
- Our results indicate that turbulence has substantial effects on refuge use and distribution of C. flavicans larvae. Increasing turbulence can greatly diminish the ability of prey species to use their vertical refuges. Once away from their vertical refuge, chaoborids are highly vulnerable to horizontal dispersion, thus upsetting their horizontal escape behaviour. Small‐scale turbulence is therefore likely to have considerable effects on food‐web dynamics in lakes.
8.
Trickle-bed root culture reactors are shown to achieve tissue concentrations as high as 36 g DW/L (752 g FW/L) at a scale of 14 L. Root growth rate in a 1.6-L reactor configuration with improved operational conditions is shown to be indistinguishable from the laboratory-scale benchmark, the shaker flask (mu=0.33 day(-1)). These results demonstrate that trickle-bed reactor systems can sustain tissue concentrations, growth rates and volumetric biomass productivities substantially higher than other reported bioreactor configurations. Mass transfer and fluid dynamics are characterized in trickle-bed root reactors to identify appropriate operating conditions and scale-up criteria. Root tissue respiration goes through a minimum with increasing liquid flow, which is qualitatively consistent with traditional trickle-bed performance. However, liquid hold-up is much higher than traditional trickle-beds and alternative correlations based on liquid hold-up per unit tissue mass are required to account for large changes in biomass volume fraction. Bioreactor characterization is sufficient to carry out preliminary design calculations that indicate scale-up feasibility to at least 10,000 liters. 相似文献
9.
Kristen M. Reifel Brandon K. Swan Errel Olivo James M. Watts Charles C. Trees Stuart H. Hurlbert 《Hydrobiologia》2007,576(1):167-183
The influence of river inflows (2.5–5 g l−1) on phytoplankton and zooplankton was assessed with samples collected at 17 sites around the 50 km perimeter of the southern
basin of the Salton Sea (41–45 g l−1) along the 5 m isobath on 2 September and 11 December 2000. Phytoplankton generally increased in abundance downcurrent of
the points of inflow, but patterns in downcurrent abundance varied widely among species. Several diatom species showed large
increases; Chaetoceros muelleri var subsalsum, Cylindrotheca closterium and Thalassionema sp. increased up to 800-fold in abundance by ca. 20 km downcurrent from inflow points in September. In contrast, the dinoflagellates
Gyrodinium uncatenum and Prorocentrum minimum increased 6- and 4-fold, respectively, in December, and Gonyaulax grindleyi actually decreased downcurrent of the rivers in September. In September, patterns in downcurrent abundance were correlated
with the ratio of cell surface area to cell biovolume, with species with high ratios showing the largest increases. Zooplankton
abundances did not show regular trends downcurrent of river inflows except for the larvae of Balanus amphitrite, which increased in density ca. 100-fold. This increase most likely reflected the abundance of adult-colonized rocky substrates
near river inflow points. The strong upcurrent trends documented for some species seemed to have been due to the injection
of nutrient-rich water from central to nearshore areas and near-site mortality due to the presence of hydrogen sulfide. This
study gives a first glimpse of the complexity of the responses of nearshore plankton to river inflow and provides evidence
for how changes in factors such as current speed, nutrient supply and salinity stratification may influence plankton dynamics.
Guest Editor: John M. Melack
Saline Waters and their Biota 相似文献
10.
Abstract The importance of non‐trophic animal damage (biting and uprooting without consumption) and mortality of canopy tree seedlings were investigated in a warm temperate forest, in northern New Zealand. Two hundred seedlings 10‐30 cm in height were monitored at 4‐6‐week intervals for 2 years. Non‐trophic animal damage accounted for more seedling mortality in the first year (37.5% of all mortalities) than any other cause. Of the seedlings damaged in non‐trophic animal interactions 73% were bitten off close to the ground and left uneaten and the remainder were uprooted. In the second year all non‐trophic animal damage and mortality ceased following the control of rabbits (Oryctolagus cuniculus), suggesting that rabbits were the major cause of this damage. Total annual mortality rates (6‐8%) were low. However, measured seedling growth rates indicated an average time for seedlings to grow from 10 to 30 cm of 37 years. Therefore, in the absence of rabbit control, mortality due to non‐trophic animal interactions (3% per year) can have an important cumulative effect. Non‐trophic animal damage found in the present study before rabbits were culled (5% per year) was similar to that reported for two tropical forests, but much less than that reported for some other tropical and temperate forests. 相似文献
11.
Elisa Berdalet 《Journal of phycology》1992,28(3):267-272
Laboratory experiments were conducted to study the effects of agitation on growth, cell division, and nucleic acid dynamics of the dinoflagellate Gymnodinium nelsonii Martin. When cultures were placed on an orbital shaker at 100 rpm, cell division was prevented, cellular volume increased up to 1.5 times that of the nonperturbed cells, the form and location of the cell nucleus were modified, and the RNA and DNA concentrations per cell increased up to 10 times those of the controls. When shaking was stopped after 10 days, cells divided immediately at about 2/3 of the division rate of the unshaken populations, and all the altered parameters were restored. If the agitation continued for more than 20 days, total cell death and disintegration occurred. Several cellular types differing in size and shape were observed in the control and shaken cultures. One possible hypothesis for these results is that failure of the cell to divide results from physical disturbance of the microtubule assemblage associated with chromosome separation during mitosis. My study suggests that small-scale oceanic turbulence of sufficient intensity may inhibit growth of individual dinoflagellate cells, but immediate development of the population may continue when calm weather follows the active mixing period. 相似文献
12.
J. J. Gallardo Rodríguez A. Sánchez Mirón F. García Camacho M. C. Cerón García E. H. Belarbi Y. Chisti E. Molina Grima 《Biotechnology progress》2009,25(3):792-800
Dinoflagellates have proven extremely difficult to culture because they are inhibited by low‐level shear forces. Specific growth rate of the toxic dinoflagellate Protoceratium reticulatum was greatly decreased compared with static control culture by intermittent exposure to a turbulent hydrodynamic environment with a bulk average shear rate that was as low as 0.3 s?1. Hydrodynamic forces appeared to induce the production of reactive oxygen species (ROS) within the cells and this caused peroxidation of cellular lipids and ultimately cell damage. Exposure to damaging levels of shear rate correlated with the elevated level of lipoperoxides in the cells, but ROS levels measured directly by flow cytometry did not correlate with shear induced cell damage. This was apparently because the measured level of ROS could not distinguish between the ROS that are normally generated by photosynthesis and the additional ROS produced as a consequence of hydrodynamic shear forces. Continuously subjecting the cells to a bulk average shear rate value of about 0.3 s?1 for 24‐h caused an elevation in the levels of chlorophyll a, peridinin and dinoxanthin, as the cells apparently attempted to counter the damaging effects of shear fields by producing pigments that are potential antioxidants. In static culture, limitation of carbon dioxide produced a small but measureable increase in ROS. The addition of ascorbic acid (0.1 mM) to the culture medium resulted in a significant protective effect on lipid peroxidation, allowing cells to grow under damaging levels of shear rates. This confirmed the use of antioxidant additives as an efficient strategy to counter the damaging effects of turbulence in photobioreactors where shear sensitive dinoflagellates are cultivated. © 2009 American Institute of Chemical Engineers Biotechnol. Prog., 2009 相似文献
13.
Spatially heterogeneous and temporally variable nutrient concentrations (P, N) in near‐surface aquifers are common and are driven by different factors such as climate, topography, vegetation, sediment compositions, and water level fluctuations. Nonetheless, the identification of discrete areas where similar concentrations patterns can be expected is still difficult, especially in patchy systems such as riparian zones of lowland rivers. To address this challenge, a floodplain aquifer of the river Spree (Germany) has been investigated by sampling groundwater with high vertical and horizontal resolutions. Vertical nutrient distributions measured by multi‐level samplers with a 10 cm resolution indicate a biogeochemical layering of the aquifer. High concentrations in the upper 2 m can be attributed to a local redox gradient, which is induced by water level fluctuations and biological turnover processes, while the layer below is mainly influenced by medium‐scale to large‐scale groundwater flow patterns. High concentration in the upper part of the aquifer enforces groundwater sampling with a high horizontal resolution of 3 m from the near‐surface groundwater. The results compared with highly resolved elevation and sediment data indicate that geomorphological features and water level fluctuations control the thickness of the unsaturated zone and the redox gradient. The strength of the gradient and the amount of degradable organic matter determine the intensity of nutrient release by chemical reactions and biological turnover. Copyright © 2014 John Wiley & Sons, Ltd. 相似文献
14.
Raul Montañez Miguel Angel Medina Ricard V. Solé Carlos Rodríguez‐Caso 《BioEssays : news and reviews in molecular, cellular and developmental biology》2010,32(3):246-256
The search for a systems‐level picture of metabolism as a web of molecular interactions provides a paradigmatic example of how the methods used to characterize a system can bias the interpretation of its functional meaning. Metabolic maps have been analyzed using novel techniques from network theory, revealing some non‐trivial, functionally relevant properties. These include a small‐world structure and hierarchical modularity. However, as discussed here, some of these properties might actually result from an inappropriate way of defining network interactions. Starting from the so‐called bipartite organization of metabolism, where the two meaningful subsets (reactions and metabolites) are considered, most current works use only one of the subsets by means of so‐called graph projections. Unfortunately, projected graphs often ignore relevant biological and chemical constraints, thus leading to statistical artifacts. Some of these drawbacks and alternative approaches need to be properly addressed. 相似文献
15.
Within smolt ages there was a strong negative correlation between pre- and post-smolt growth in wild three-sea-winter female Atlantic salmon Salmo salar . This indicates that trait values providing, or resulting from, increased growth in one environment may cause growth to decrease in the other, potentially constraining growth rate evolution. 相似文献
16.
Growth experiments were carried out on the marine calcareous dinoflagellate Thoracosphaera heimii. Two strains (A603, GeoB 86) of the phototrophic, predominantly vegetative coccoid T. heimii were cultured at different temperature and nutrient levels. For the temperature experiment a gradient box was developed to allow the simultaneous testing of a wide range of temperatures on phytoplankton. During the investigations T. heimii was growing from 14 to 27°C. Exponential growth rates do not show an unimodal response curve vs. temperature: values rise with increasing temperatures toward maximal growth rates around 27°C. At low temperatures exponential growth is extremely long (over 50 days). In f/2 culture medium T. heimii (A603) is less efficient at high temperatures than at low temperatures, final yield was about five times higher at 16°C than at 27°C. Growth rate and final yield at 27°C are approximately the same for all experiments, despite different nutrient levels. Mean shell diameters show no clear relation to growth temperature. Calcification of T. heimii shells is inversely related to temperature. 相似文献
17.
Yakov Chudnovsky Joey F. Li Peter J. Rizzo J. Woodland Hastings Thomas F. Fagan 《Journal of phycology》2002,38(3):543-550
Although nucleosomes and histones are lacking in dinoflagellate nuclei, small basic histone‐like proteins have been reported, but their function(s) is unknown. In this study we cloned and sequenced a gene for a histone‐like protein from the dinoflagellate Lingulodinium polyedrum (Stein) Dodge (HLp) (formerly Gonyaulax polyedra Stein) and investigated its post‐translational modification and DNA‐binding activities. HLp appears to be acetylated in L. polyedrum, and we identified several L. polyedrum proteins that possess histone acetyltransferase activity and may be responsible for this modification. HLp binds weakly to L. polyedrum DNA but to certain specific sequences with higher affinity, consistent with its having a regulatory function. 相似文献
18.
Nuclear and chloroplast-encoded small subunit ribosomal DNA sequences were obtained from several strains of the toxic dinoflagellate Gymnodinium galatheanum. Phylogenetic analyses and comparison of sequences indicate that the chloroplast sequences show a higher degree of sequence divergence than the nuclear homologue. The chloroplast sequences were chosen as targets for the development of a 5'--3' exonuclease assay for detection of the organism. The assay has a very high degree of specificity and has been used to screen environmental water samples from a fish farm where the presence of this dinoflagellate species has previously been associated with fish kills. Various hypotheses for the derived nature of the chloroplast sequences are discussed, as well as what is known about the toxicity of the species. 相似文献
19.
Alvin A. Carlos Brett K. Baillie Masanobu Kawachi Tadashi Maruyama 《Journal of phycology》1999,35(5):1054-1062
The genus Symbiodinium is the commonly observed symbiotic dinoflagellate (zooxanthellae) that forms mutual associations with various marine invertebrates. Numerous studies have revealed that the genus is comprised of a group of diverse taxa, and information on the phylogenetic relationships among the genus’ members is increasing. In this study, small subunit (SSU) ribosomal RNA (ssrRNA) gene sequences were determined for 15 more Symbiodinium strains from 12 relatively unstudied host taxa (Indo-Pacific tridacnids, cardiids, sponge, and soft coral), 1 hitherto unreported free-living Symbiodinium strain, and 4 other Symbiodinium strains from four other host taxa (Indo-Pacific zoanthid, foraminifer, jellyfish, and mid-Pacific hard coral). Their respective phylogenetic positions were inferred, and strains that are either closely related to or distinct from previously reported Symbiodinium taxa were revealed. The cultured Symbiodinium strains isolated from individuals of six species of tridacnids and three species of cardiids all had identical ssrRNA gene sequences, are closely related to S. microadriaticum Freudenthal, and are indistinguishable from the RFLP Type A strain previously reported. However, the ssrRNA gene sequences of clam symbionts that were obtained via gene cloning were different from those of the cultured isolates and represent strains that are close to the RFLP Type C strains. The Symbiodinium-like dinoflagellate from the Indo-Pacific sponge Haliclona koremella De Laubenfels is distinct from any of the Symbiodinium taxa studied and may be similar to the symbiont previously isolated from the stony coral Montipora patula Quelch. The isolates from the soft coral Sarcophyton glaucum Quoy et Gaimard and from the zoanthid Zoanthus sp. are both very closely related to S. pilosum Trench et Blank. The free-living Symbiodinium isolate is very closely related to the symbiont isolated from the Indo-Pacific foraminifer Amphisorus hemprichii Ehrenberg, which in turn is distinct from the Red Sea strain isolated from a similar host. Theisolate from Cassiopeia sp. is different from S. microadriaticum F., the type species harbored by Cassiopeia xamachana Bigelow, and is instead very closely related to S. pulchrorum Trench isolated from a sea anemone. The symbiont from the stony coral M. verrucosa Lamarck is a sister taxon to the symbionts isolated from the foraminifera Marginopora kudakajimensis Gudmundsson and Sorites orbiculus Forskål. These data suggest that polymorphic symbioses extend from cnidarians to some bivalve, foraminifer, and jellyfish host species. 相似文献
20.
Matthew C. Brewer James N. Coughlin 《Marine and Freshwater Behaviour and Physiology》2013,45(2-4):91-100
Small‐scale zooplankton swimming behaviors can affect aquatic predator‐prey interactions. Difficulties in controlling prey swimming behavior however, have restricted the ability to test hypotheses relating differences in small‐scale swimming behavior to frequency of predation by fish. We report here a Virtual Plankton (VP) system that circumvents this problem by allowing the observation of fish “preying\"on computer‐generated prey images whose size, shape, color and swimming behavior can be precisely controlled. Two experiments were performed in which bluegill sunfish (Lepomis macrochirus) were given a choice of either two VP images, one of which moved twice as fast as the other, or six VP, one of which moved either faster (1.25 x, 1.5 x or 2 x ) or slower (0.5 x) than the other five. Current predator‐prey models based on encounter probabilities and prey visibility predict that moving faster increases predation risk and conversely, moving slower decreases predation risk. In agreement with existing predator‐prey models, in both experiments, fish chose faster moving VP significantly more often than their slower moving neighbors. Contrary to the predictions of existing models, in the second experiment with six VP, the rate at which fish chose a prey image moving half as fast as the five surrounding images did not differ significantly from the rate predicted by chance(l/6). These results suggest that current fish‐zooplankton predation models would benefit by the incorporation of small‐scale swimming behavior and assessments of its influence on overall prey visibility. 相似文献