Benthic microalgae in coral reef sediments of the southern Great Barrier Reef,Australia

The abundance and productivity of benthic microalgae in coral reef sediments are poorly known compared with other, more conspicuous (e.g. coral zooxanthellae, macroalgae) primary producers of coral reef habitats. A survey of the distribution, biomass, and productivity of benthic microalgae on a platform reef flat and in a cross-shelf transect in the southern Great Barrier Reef indicated that benthic microalgae are ubiquitous, abundant (up to 995.0 mg chlorophyll (chl) a m^–2), and productive (up to 110 mg O₂ m^–2 h^–1) components of the reef ecosystem. Concentrations of benthic microalgae, expressed as chlorophyll a per surface area, were approximately 100-fold greater than the integrated water column concentrations of microalgae throughout the region. Benthic microalgal biomass was greater on the shallow water platform reef than in the deeper waters of the cross-shelf transect. In both areas the benthic microalgal communities had a similar composition, dominated by pennate diatoms, dinoflagellates, and cyanobacteria. Benthic microalgal populations were potentially nutrient-limited, based on responses to nitrogen and phosphorus enrichments in short-term (7-day) microcosm experiments. Benthic microalgal productivity, measured by O₂ evolution, indicated productive communities responsive to light and nutrient availability. The benthic microalgal concentrations observed (92–995 mg chl a m^–2) were high relative to other reports, particularly compared with temperate regions. This abundance of productive plants in both reef and shelf sediments in the southern Great Barrier Reef suggests that benthic microalgae are key components of coral reef ecosystems.Communicated by Environmental Editor, B.C. Hatcher     

Recruitment Variability of Coral Reef Sessile Communities of the Far North Great Barrier Reef

One of the key components in assessing marine sessile organism demography is determining recruitment patterns to benthic habitats. An analysis of serially deployed recruitment tiles across depth (6 and 12 m), seasons (summer and winter) and space (meters to kilometres) was used to quantify recruitment assemblage structure (abundance and percent cover) of corals, sponges, ascidians, algae and other sessile organisms from the northern sector of the Great Barrier Reef (GBR). Polychaetes were most abundant on recruitment titles, reaching almost 50% of total recruitment, yet covered <5% of each tile. In contrast, mean abundances of sponges, ascidians, algae, and bryozoans combined was generally less than 20% of total recruitment, with percentage cover ranging between 15–30% per tile. Coral recruitment was very low, with <1 recruit per tile identified. A hierarchal analysis of variation over a range of spatial and temporal scales showed significant spatio-temporal variation in recruitment patterns, but the highest variability occurred at the lowest spatial scale examined (1 m—among tiles). Temporal variability in recruitment of both numbers of taxa and percentage cover was also evident across both summer and winter. Recruitment across depth varied for some taxonomic groups like algae, sponges and ascidians, with greatest differences in summer. This study presents some of the first data on benthic recruitment within the northern GBR and provides a greater understanding of population ecology for coral reefs.     

Currents and flusing of Britomart reef lagoon,Great Barrier Reef

Currents, sea levels and weather were measured for a 60 d period at a number of sites in and near Britomart reef, Great Barrier Reef. The tidal currents were primarily semi-diurnal in character. The lowfrequency currents were due to a simple balance, in the longshore direction, between the wind stress and the bottom frictional stress, and, in the cross-shelf direction, between the bottom frictional stress and the pressure gradient generated by the passage of wind-driven continental shelf waves. The bottom friction coefficient, for the nonlinear drag law, is estimated to be of the order of 0.02. By contrast, the currents over the surrounding continental shelf are primarily controlled by continental shelf wave dynamics and are not dominated by friction. It thus appears that the water bodies in, respectively, the reef matrix and the Lagoon of the Great Barrier Reef are relatively uncoupled. Tidal and low-frequency currents contributed roughly equally to the flushing of Britomart reef lagoon with an estimated flushing time of the order of 4 d.     

Coral Reef Community Composition in the Context of Disturbance History on the Great Barrier Reef,Australia

Much research on coral reefs has documented differential declines in coral and associated organisms. In order to contextualise this general degradation, research on community composition is necessary in the context of varied disturbance histories and the biological processes and physical features thought to retard or promote recovery. We conducted a spatial assessment of coral reef communities across five reefs of the central Great Barrier Reef, Australia, with known disturbance histories, and assessed patterns of coral cover and community composition related to a range of other variables thought to be important for reef dynamics. Two of the reefs had not been extensively disturbed for at least 15 years prior to the surveys. Three of the reefs had been severely impacted by crown-of-thorns starfish outbreaks and coral bleaching approximately a decade before the surveys, from which only one of them was showing signs of recovery based on independent surveys. We incorporated wave exposure (sheltered and exposed) and reef zone (slope, crest and flat) into our design, providing a comprehensive assessment of the spatial patterns in community composition on these reefs. Categorising corals into life history groupings, we document major coral community differences in the unrecovered reefs, compared to the composition and covers found on the undisturbed reefs. The recovered reef, despite having similar coral cover, had a different community composition from the undisturbed reefs, which may indicate slow successional processes, or a different natural community dominance pattern due to hydrology and other oceanographic factors. The variables that best correlated with patterns in the coral community among sites included the density of juvenile corals, herbivore fish biomass, fish species richness and the cover of macroalgae. Given increasing impacts to the Great Barrier Reef, efforts to mitigate local stressors will be imperative to encouraging coral communities to persist into the future.     

Biomass and distribution of herbivorous blennies in the southern Great Barrier Reef

At the small scale (<1 m²), a correlation between microhabitat availability and abundance of comb–toothed blennies was apparent at Heron Island. Investigation of medium scale (>20 m2) differences, showed that community structure and biomass of herbivorous blennies differed among the 14 geomorphological zones identified. Large scale differences (>10 km²), detected using comparisons between Heron, Lady Elliot and North West reefs, revealed that species composition and biomass, but not density, differed significantly. At Heron Reef, density and biomass of comb–toothed blennies exceeded published estimates for most groups of conspicuous herbivorous fish in equivalent zones. The influence of scale on interpretation of patterns of fish distribution and the role of inconspicuous grazers such as comb–toothed blennies, deserves closer attention.     

Internal structure and Holocene evolution of One Tree Reef,southern Great Barrier Reef

Summary Analysis of core from six drill holes and ten vibrocores from One Tree Reef has delineated five major biosedimentological facies: algal pavement, coral head facies, branching coral facies, reef flat rubble facies and sand facies. Holocene growth began around 8,000 years B.P. with a high energy coral head facies on windward margins and a lower energy branching coral facies on patch reefs and on leeward margins. Vertical accumulation rates for these two principal facies are not greatly different; the coral head facies grew at 1.8–7.3 m/1,000 years and the branching coral facies at 0.6–8.3 m/1,000 years. Growth was initially much slower than the rate of sea level rise, a situation which changed only after sea level stabilized around 6,200 years B.P. A facies evolution model with rigidly imposed time constraints divides growth into three phases, i.e. vertical growth to sea level, transitional adjustment of biofacies at sea level, and leeward progradative phases.     

Constancy and Change in some Great Barrier Reef Coral Communities: 1980-1991

Disturbances have played major roles in shaping community structurein Great Barrier Reef coral communities in the period 1980–90.Major causes of coral death have been a coral bleaching episodein 1982, predation by crown of thorn starfish Acanthaster planci,and cyclone damage. A series of 30 permanent photo-transectswas established on six reefs on the Great Barrier Reef in 1979–80.This is a very small sample, but nearly all transects were affectedby one or other of these disturbances early in the decade. Thechanges are summarised as transitions among five stages identifiedin a model incorporating "normal" and "abnormal" patch dynamicsof coral communities. The major disturbances of bleaching, crownof thorns and cyclones tend to cause high coral mortality overlarge areas, but nevertheless it was surprising that such alarge proportion of photo-transects was affected. By the endof the decade, none of the damaged transects had "recovered,"in terms of percentage coral cover or numbers of new colonies.Photo-transects and visual surveys showed sites deeper than3 m had particularly poor recovery. Hydrodynamic models predictconsiderable patchiness in larval availability, an essentialprecursor for coral recolonization.     

Patterns of recruitment and microhabitat associations for three predatory coral reef fishes on the southern Great Barrier Reef, Australia

This study examined recruitment patterns and microhabitat associations for three carnivorous fishes, Plectropomus maculatus, Lutjanus carponotatus and Epinephelus quoyanus, at the Keppel Islands, southern Great Barrier Reef, Australia. Habitat selectivity was highest for recruits that were found mostly with corymbose Acropora, predominantly on patches of live coral located over loose substrates (sand). Adults were more commonly associated with tabular Acropora. The proportion of P. maculatus (72 %) found with live corals was higher than for L. carponotatus (68 %) and E. quoyanus (44 %). Densities of recruits were highly variable among locations, but this was only partly related to availability of preferred microhabitats. Our findings demonstrate that at least some carnivorous reef fishes, especially during early life-history stages, strongly associate with live corals. Such species will be highly sensitive to increasing degradation of coral reef habitats.     

Patterns in the distribution of fish communities across the Central Great Barrier Reef

Summary Changes in the structure of fish communities along a transect from the Australian mainland to the Coral Sea, in the Central region of the Great Barrier Reef, were examined. Visual censuses of fish were made on the outer reef slopes (0 to 13 m deep) of two inshore reefs, approximately 10 km offshore, three reefs on the mid-shelf, 50 km offshore, three reefs on the outer shelf, 100 km offshore, and three reefs in the Coral Sea approximately 200 km offshore. The Pomacentridae, Chaetodontidae, Acanthuridae and Scaridae were examined in detail—the Labridac, Siganidae and the lutjanid genus Caesio in less detail. Major changes in the composition of fish communities occurred along the transect (Fig. 3). There were differences in the composition of assemblages among replicate censuses within individual reefs and also differences between reefs at the same location on the transect but these differences were small compared to those among locations. The nature of the distribution of species across the transect differed between families (Figs. 4–6). Pomacentrid and chaetodontid species were significantly more restricted in distribution than acanthurids, scarids or labrids.     

The dynamics of benthic microbial communities at Davies Reef,central Great Barrier Reef

The dynamics of benthic microbial communities were examined within different functional zones (reef crest, reef flat, lagoon) of Davies Reef, central Great Barrier Reef, in winter. Bacterial numbers did not change significantly across the reef with a mean abundance of 1.3 (±0.6) x 10⁹ cells g^-1 DW of sediment. Bacterial production, measured as thymidine incorporation into DNA, ranged from 1.2 (±0.2) to 11.6 (±1.5) mg C m^-2h^-1 across the reef and was significantly lower in a reef crest basin than in the other zones. Bacterial growth rates () across the reef (0.05 to 0.33 g^-1) correlated only with sediment organic carbon and nitrogen. Protozoan and meiofaunal densities varied by an order of magnitude across the reef and correlated with one or more sediment variables but not with bacterial numbers or growth rates. Nutrient flux rates were similar to those found at other reefs in the central and southern Great Barrier Reef and are significantly lower than rates measured in temperate sand communities. In the front lagoon, bioturbation and feeding acitivity by thalassinid shrimps (Callianassa spp.) negatively influenced microbial and meiofaunal communities with a net import of organic matter necessary to support the estimated rates of bacterial productivity. In lagoonal areas not colonized by shrimps, primary productivity (400–1100 mg C m^-2d^-1) from algal mats was sufficient to support bacterial growth. It is suggested that deposit-feeding macrobenthos such as thalassinid crustaceans play a major role in the tructuring and functioning of lower trophic groups (bacteria, microalgae, protozoa, meiofauna) in coral reef sedments, particularly in laggons.     

Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area,Australia

Aim

Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef.

Location

Great Barrier Reef, Australia.

Methods

Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR.

Results

Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs.

Main Conclusion

Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change.     

Local variation in herbivore feeding activity on an inshore reef of the Great Barrier Reef

Threats to coral reefs may be manifested through an increase in macroalgae. Across the globe, phase-shifts from coral to macroalgal dominance have been reported from the Caribbean, Indian and Pacific Oceans. While the Great Barrier Reef (GBR) is in relatively good condition, inshore reefs may exhibit over 50% macroalgal cover. However, our understanding of the processes preventing the macroalgal expansion remains uncertain. Using a remote video bioassay approach, this study quantified herbivory in three bays along the leeward margin of Orpheus Island. Despite significant with-in bay variation in herbivory there was no detectable statistical difference in the rates of herbivory among bays. Furthermore, of the 45 herbivore species recorded from the island, only three played a significant role in bioassay removal, Siganus canaliculatus, Siganus javus and Kyphosus vaigiensis, with only one species predominating in each bay. Reefs of the GBR may therefore be more vulnerable than previously thought, with the removal of macroalgae depending on just a few species, which exhibit considerable spatial variability in their feeding behaviour.     

Spatio-temporal variation in coral recruitment at different scales on Heron Reef, southern Great Barrier Reef

 Recruitment of scleractinian corals on settlement plates at Heron Island, Great Barrier Reef, was examined over four years (September 1991–September 1995) to quantify spatio-temporal patterns at different scales and to assess post settlement mortality. Recruitment was dominated by pocilloporid corals which accounted for 80.1% of the 8627 spat counted, whereas non-isoporan acroporids represented only 16.4%. Poritids, faviids and isoporan acroporids rarely recruited to the plates (3.5%), despite their obvious abundance as adults on the reef. Recruitment patterns on the plates indicate strong space-time interactions as evidenced by patchy recruitment of both pocilloporid and acroporid spat. Interactions were found between space (on the scale of 10² m, i.e. sites within zones, and 10¹ m, i.e. racks within sites) and time (on the scale of years) for pocilloporids and between space (on the scale of 10³ m, i.e. zones, and 10² m) and time (on the scale of years) for acroporids. Post-recruitment mortality of acroporid spat in the period 3–10 months after their major spawning was dependent on their initial recruitment density, but pocilloporid mortality was either independent of initial recruitment density or, more likely, obscured by additional recruitment of pocilloporids to plates between late February and September. High rates of recruitment and growth by other sessile organisms, particularly bryozoans and oysters, appear to result in increased post-recruitment mortality and limit recruitment of scleractinian corals on settlement plates. The work reinforces an emerging picture that coral recruitment patterns are determined by mechanisms that manifest over a large range of spatial scales. Accepted: 1 September 1997     

Coral bleaching: one disturbance too many for near-shore reefs of the Great Barrier Reef

The dynamic nature of coral communities can make it difficult to judge whether a reef system is resilient to the current disturbance regime. To address this question of resilience for near-shore coral communities of the Great Barrier Reef (Australia) a data set consisting of 350 annual observations of benthic community change was compiled from existing monitoring data. These data spanned the period 1985–2007 and were derived from coral reefs within 20 km of the coast. During years without major disturbance events, cover increase of the Acroporidae was much faster than it was for other coral families; a median of 11% per annum compared to medians of less than 4% for other coral families. Conversely, Acroporidae were more severely affected by cyclones and bleaching events than most other families. A simulation model parameterised with these observations indicated that while recovery rates of hard corals were sufficient to compensate for impacts associated with cyclones and crown-of-thorns starfish, the advent of mass bleaching has lead to a significant change in the composition of the community and a rapid decline in hard coral cover. Furthermore, if bleaching events continue to occur with the same frequency and severity as in the recent past, the model predicts that the cover of Acroporidae will continue to decline. Although significant cover of live coral remains on near-shore reefs, and recovery is observed during inter-disturbance periods, it appears that this system will not be resilient to the recent disturbance regime over the long term. Conservation strategies for coral reefs should focus on both mitigating local factors that act synergistically to increase the susceptibility of Acroporidae to climate change while promoting initiatives that maximise the recovery potential from inevitable disturbances.     

Patterns of spacing in a coral reef fish in two habitats on the Great Barrier Reef

Patterns of spacing in the butterflyfish Chaetodon trifasciatus (Pisces, Chaetodontidae) were studied in two habitats on the southern Great Barrier Reef. Pairs of fish were found to defend territories at reef slope and lagoon study sites. Territories were 2·7–3·7 times larger in the lagoon than on the reef slope, where population density and food abundance were greater. No significant changes occurred in the sizes of territories in either habitat over on year, but patterns of spacing were generally more variable in the lagoon habitat. This was interpreted as a response to low population density and poor habitat quality.     

Contrasting rates of coral recovery and reassembly in coral communities on the Great Barrier Reef

Changes in the relative abundances of coral taxa during recovery from disturbance may cause shifts in essential ecological processes on coral reefs. Coral cover can return to pre-disturbance levels (coral recovery) without the assemblage returning to its previous composition (i.e., without reassembly). The processes underlying such changes are not well understood due to a scarcity of long-term studies with sufficient taxonomic resolution. We assessed the trajectories and time frames for coral recovery and reassembly of coral communities following disturbances, using modeled trajectories based on data from a broad spatial and temporal monitoring program. We studied coral communities at six reefs that suffered substantial coral loss and subsequently regained at least 50 % of their pre-disturbance coral cover. Five of the six communities regained their coral cover and the rates were remarkably consistent, taking 7–10 years. Four of the six communities reassembled to their pre-disturbance composition in 8–13 years. The coral communities at three of the reefs both regained coral cover and reassembled ten years. The trajectories of two communities suggested that they were unlikely to reassemble and the remaining community did not regain pre-disturbance coral cover. The communities that regained coral cover and reassembled had high relative abundance of tabulate Acropora spp. Coral communities of this composition appear likely to persist in a regime of pulse disturbances at intervals of ten years or more. Communities that failed to either regain coral cover or reassemble were in near-shore locations and had high relative abundance of Porites spp. and soft corals. Under current disturbance regimes, these communities are unlikely to re-establish their pre-disturbance community composition.     

Presence of Symbiodinium spp. in macroalgal microhabitats from the southern Great Barrier Reef

Coral reefs are highly dependent on the mutualistic symbiosis between reef-building corals and dinoflagellates from the genus Symbiodinium. These dinoflagellates spend part of their life cycle outside the coral host and in the majority of the cases have to re-infect corals each generation. While considerable insight has been gained about Symbiodinium in corals, little is known about the ecology and biology of Symbiodinium in other reef microhabitats. This study documents Symbiodinium associating with benthic macroalgae on the southern Great Barrier Reef, including some Symbiodinium that are genetically close to the symbiotic strains from reef-building corals. It is possible that some of these Symbiodinium were in hospite, associated to soritid foraminifera or ciliates; nevertheless, the presence of Symbiodinium C3 and C15 in macroalgal microhabitats may also suggest a potential link between communities of Symbiodinium associating with both coral hosts and macroalgae.     

Chimerism in Wild Adult Populations of the Broadcast Spawning Coral Acropora millepora on the Great Barrier Reef

Background

Chimeras are organisms containing tissues or cells of two or more genetically distinct individuals, and are known to exist in at least nine phyla of protists, plants, and animals. Although widespread and common in marine invertebrates, the extent of chimerism in wild populations of reef corals is unknown.

Methodology/Principal Findings

The extent of chimerism was explored within two populations of a common coral, Acropora millepora, on the Great Barrier Reef, Australia, by using up to 12 polymorphic DNA microsatellite loci. At least 2% and 5% of Magnetic Island and Pelorus Island populations of A. millepora, respectively, were found to be chimeras (3% overall), based on conservative estimates. A slightly less conservative estimate indicated that 5% of colonies in each population were chimeras. These values are likely to be vast underestimates of the true extent of chimerism, as our sampling protocol was restricted to a maximum of eight branches per colony, while most colonies consist of hundreds of branches. Genotypes within chimeric corals showed high relatedness, indicating that genetic similarity is a prerequisite for long-term acceptance of non-self genotypes within coral colonies.

Conclusions/Significance

While some brooding corals have been shown to form genetic chimeras in their early life history stages under experimental conditions, this study provides the first genetic evidence of the occurrence of coral chimeras in the wild and of chimerism in a broadcast spawning species. We hypothesize that chimerism is more widespread in corals than previously thought, and suggest that this has important implications for their resilience, potentially enhancing their capacity to compete for space and respond to stressors such as pathogen infection.     

Coral Reefs on the Edge? Carbon Chemistry on Inshore Reefs of the Great Barrier Reef

While increasing atmospheric carbon dioxide (CO₂) concentration alters global water chemistry (Ocean Acidification; OA), the degree of changes vary on local and regional spatial scales. Inshore fringing coral reefs of the Great Barrier Reef (GBR) are subjected to a variety of local pressures, and some sites may already be marginal habitats for corals. The spatial and temporal variation in directly measured parameters: Total Alkalinity (TA) and dissolved inorganic carbon (DIC) concentration, and derived parameters: partial pressure of CO₂ (pCO₂); pH and aragonite saturation state (Ω_ar) were measured at 14 inshore reefs over a two year period in the GBR region. Total Alkalinity varied between 2069 and 2364 µmol kg⁻¹ and DIC concentrations ranged from 1846 to 2099 µmol kg⁻¹. This resulted in pCO₂ concentrations from 340 to 554 µatm, with higher values during the wet seasons and pCO₂ on inshore reefs distinctly above atmospheric values. However, due to temperature effects, Ω_ar was not further reduced in the wet season. Aragonite saturation on inshore reefs was consistently lower and pCO₂ higher than on GBR reefs further offshore. Thermodynamic effects contribute to this, and anthropogenic runoff may also contribute by altering productivity (P), respiration (R) and P/R ratios. Compared to surveys 18 and 30 years ago, pCO₂ on GBR mid- and outer-shelf reefs has risen at the same rate as atmospheric values (∼1.7 µatm yr⁻¹) over 30 years. By contrast, values on inshore reefs have increased at 2.5 to 3 times higher rates. Thus, pCO₂ levels on inshore reefs have disproportionately increased compared to atmospheric levels. Our study suggests that inshore GBR reefs are more vulnerable to OA and have less buffering capacity compared to offshore reefs. This may be caused by anthropogenically induced trophic changes in the water column and benthos of inshore reefs subjected to land runoff.