Distribution of chlorophytic phytoplankton in Northern Thailand

The distribution of phytoplankton was investigated in standing water bodies such as reservoirs, ponds and marshes. Thirty sampling sites in Northern Thailand were studied during 1998–2005. The water quality could be classified as oligotrophic-mesotrophic to eutrophic status. Twelve families, 51 genera and 181 species of chlorophytic phytoplankton were found. The dominant genera were Staurastrum spp., Cosmarium spp., Scenedesmus spp. and Pediastrum spp. The distribution of these species was mainly affected by the water quality. Presented at the International Symposium Biology and Taxonomy of Green Algae V, Smolenice, June 26–29, 2007, Slovakia.     

The composition and distribution of pelagic ostracods (Ostracoda: Myodocopa) in antarctic waters adjacent to the d’Urville Sea

The faunistic composition of pelagic ostracods of regions situated to the north and northwest of the d’Urville Sea (60°–65°S, 148°–136° and 136°–113°E) is largely similar to that of the area adjacent to the Somov Sea at the same latitudes. Alacia hettacra is the most abundant species here; Austrinoecia isocheira, Boroecia antipoda, and Obtusoecia antarctica are common species. The maximum abundance of pelagic ostracods is observed in the 100–200 m depth range; the largest contribution to it is contributed by A. hettacra. The number of species increases with increasing depth. The 64°–65°S region between 148° and 113° E is regarded as the northern boundary of the “Polar Antarctic zone.”     

Comparative respiratory strategies of subterranean and fossorial octodontid rodents to cope with hypoxic and hypercapnic atmospheres

Subterranean rodents construct large and complex burrows and spend most of their lives underground, while fossorial species construct simpler burrows and are more active above ground. An important constraint faced by subterranean mammals is the chronic hypoxia and hypercapnia of the burrow atmosphere. The traits, regarded as “adaptations of rodents to hypoxia and hypercapnia”, have been evaluated in only a few subterranean species. In addition, well-studied subterranean taxa are very divergent to their sister groups, making it difficult to assess the adaptive path leading to subterranean life. The closely related sister genera Octodon and Spalacopus of Neotropical rodents offer a unique opportunity to trace the evolution of physiological mechanisms. We studied the ventilatory responses of selected octodontid rodents to selective pressures imposed by the subterranean niche under the working hypothesis that life underground, in hypoxic and hypercapnic conditions, promotes convergent physiological changes. To perform this study we used the following species: Spalacopus cyanus (the subterranean coruros) and Octodon degus (the fossorial degus) from central Chile. Ventilatory tidal volume and respiratory frequency were measured in non-anaesthetized spontaneously breathing animals. Acute hypoxic challenges (O₂ 1–15%) and hypercapnia (CO₂ 10%) were induced to study respiratory strategies using non-invasive whole body pletismography techniques. Our results show that coruros have a larger ventilatory response to acute hypoxia as than degus. On the other hand, hypercapnic respiratory responses in coruros seem to be attenuated when compared to those in degus. Our results suggest that coruros and degus have different respiratory strategies to survive in the hypoxic and hypercapnic atmospheres present in their burrows.     

Population genetic history of the dreissenid mussel invasions: expansion patterns across North America

This study tests population genetic patterns across the Eurasian dreissenid mussel invasions of North America—encompassing the zebra mussel Dreissena polymorpha (1986 detection) and the quagga mussel D. rostriformis bugensis (detected in 1990, which now has largely displaced the former in the Great Lakes). We evaluate their source-spread relationships and invasion genetics using 9–11 nuclear microsatellite loci for 583 zebra mussels (21 sites) and 269 quagga mussels (12 sites) from Eurasian and North American range locations, with the latter including the Great Lakes, Mississippi River basin, Atlantic coastal waterways, Colorado River system, and California reservoirs. Additionally, mtDNA cytochrome b gene sequences are used to verify species identity. Our results indicate that North American zebra mussels originate from multiple non-native northern European populations, whereas North American quagga mussels trace to native estuaries in the Southern Bug and Dnieper Rivers. Invasive populations of both species show considerable genetic diversity and structure (zebra F _ST = 0.006–0.263, quagga F _ST = 0.008–0.267), without founder effects. Most newer zebra mussel populations have appreciable genetic diversity, whereas quagga mussel populations from the Colorado River and California show some founder effects. The population genetic composition of both species changed over time at given sites; with some adding alleles from adjacent populations, some losing them, and all retaining closest similarity to their original composition. Zebra mussels from Kansas and California appear genetically similar and assign to a possible origin from the St. Lawrence River, whereas quagga mussels from Nevada and California assign to a possible origin from Lake Ontario. These assignments suggest that overland colonization pathways via recreational boats do not necessarily reflect the most proximate connections. In conclusion, our microsatellite results comprise a valuable baseline for resolving present and future dreissenid mussel invasion pathways.     

Metabolomics demonstrates divergent responses of two <Emphasis Type="Italic">Eucalyptus</Emphasis> species to water stress

Past studies of water stress in Eucalyptus spp. generally highlighted the role of fewer than five “important” metabolites, whereas recent metabolomic studies on other genera have shown tens of compounds are affected. There are currently no metabolite profiling data for responses of stress-tolerant species to water stress. We used GC–MS metabolite profiling to examine the response of leaf metabolites to a long (2 month) and severe (Ψ_predawn < −2 MPa) water stress in two species of the perennial tree genus Eucalyptus (the mesic Eucalyptus pauciflora and the semi-arid Eucalyptus dumosa). Polar metabolites in leaves were analysed by GC–MS and inorganic ions by capillary electrophoresis. Pressure–volume curves and metabolite measurements showed that water stress led to more negative osmotic potential and increased total osmotically active solutes in leaves of both species. Water stress affected around 30–40% of measured metabolites in E. dumosa and 10–15% in E. pauciflora. There were many metabolites that were affected in E. dumosa but not E. pauciflora, and some that had opposite responses in the two species. For example, in E. dumosa there were increases in five acyclic sugar alcohols and four low-abundance carbohydrates that were unaffected by water stress in E. pauciflora. Re-watering increased osmotic potential and decreased total osmotically active solutes in E. pauciflora, whereas in E. dumosa re-watering led to further decreases in osmotic potential and increases in total osmotically active solutes. This experiment has added several extra dimensions to previous targeted analyses of water stress responses in Eucalyptus, and highlights that even species that are closely related (e.g. congeners) may respond differently to water stress and re-watering.     

Species diversity, abundance, and vertical size structure of rattans in Borneo and Java

We studied rattan communities in four forest types in Borneo and Java to clarify the pattern of species diversity and vegetation structure. Within six plots of 4.82 ha in total, we found 42 rattan species in six genera with 4,736 stems (≥20 cm long). There was a significant positive correlation between rattans and trees in species diversity, decreasing in the order mixed dipterocarp (for rattans: Shannon–Wiener diversity index, H′ = 2.87–3.34) > alluvial (1.96) > lower montane (1.43) > peat swamp forests (1.34). This pattern coincided with the diversity of the regional flora. The density of rattan stems (ha^–1) decreased in the order lower montane (5,997) > mixed dipterocarp (598–992) > alluvial (592) > peat swamp forests (162). The maximum height of rattans would be determined by the canopy height, rather than by the maximum tree height. The rattan stem volume ranged from 0.25 to 1.88 m³ ha⁻¹ and was not correlated with the stem density. The cool montane climate seemed to decrease the maximum height of rattans, and a few small rattans made denser colonies. Swampy environments apparently suppressed the survival of non-climbing rattans strongly, but that of tall climbing rattans less so.     

Evidence for speciation underground in diving beetles (Dytiscidae) from a subterranean archipelago

Most subterranean animals are assumed to have evolved from surface ancestors following colonization of a cave system; however, very few studies have raised the possibility of “subterranean speciation” in underground habitats (i.e., obligate cave‐dwelling organisms [troglobionts] descended from troglobiotic ancestors). Numerous endemic subterranean diving beetle species from spatially discrete calcrete aquifers in Western Australia (stygobionts) have evolved independently from surface ancestors; however, several cases of sympatric sister species raise the possibility of subterranean speciation. We tested this hypothesis using vision (phototransduction) genes that are evolving under neutral processes in subterranean species and purifying selection in surface species. Using sequence data from 32 subterranean and five surface species in the genus Paroster (Dytiscidae), we identified deleterious mutations in long wavelength opsin (lwop), arrestin 1 (arr1), and arrestin 2 (arr2) shared by a sympatric sister‐species triplet, arr1 shared by a sympatric sister‐species pair, and lwop and arr2 shared among closely related species in adjacent calcrete aquifers. In all cases, a common ancestor possessed the function‐altering mutations, implying they were already adapted to aphotic environments. Our study represents one of the first confirmed cases of subterranean speciation in cave insects. The assessment of genes undergoing pseudogenization provides a novel way of testing modes of speciation and the history of diversification in blind cave animals.     

Fauna of an unsaturated karstic zone in Central Slovenia: two new species of Harpacticoida (Crustacea: Copepoda), Elaphoidella millennii n. sp. and E. tarmani n. sp., their ecology and morphological adaptations

The unsaturated zone in fissured (= karstic) aquifers continues to be a source of new species of Harpacticoida (Crustacea: Copepoda). The first species were discovered about 70 years ago in the Škocjanske Jame Cave in Slovenia. Intensive sampling of percolating water in caves there over the last 20 years has yielded several new species, some of them well adapted to that environment. The most recent studies revealed that such a specialised fauna is also present in other regions of Europe, South and North America, and Asia. In Europe, three genera belonging to the order Harpacticoida are characteristic of the unsaturated karstic zone: Morariopsis, Paramorariopsis and Elaphoidella. In this article, two highly specialised species of Elaphoidella are described. A detailed analysis of their ecology and morphological adaptations along with other species of the genus Elaphoidella from Slovenia is included, and comparisons are made with the epikarstic genera Morariopsis and Paramorariopsis. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: S. I. Dodson     

Silurian bolbozoids and cypridinids (Myodocopa) from Europe: pioneer pelagic ostracods

Abstract: Bolbozoid and cypridinid myodocope ostracods from France, the Czech Republic and Sardinia consist of four genera (one new: Silurocypridina) and at least ten species (eight new: Bolbozoe acuta, B. rugosa, B. parvafraga, Parabolbozoe armoricana, Silurocypridina retroreticulata, S. variostriata, S. calva and Calocaria robusta). They have a functional design, palaeogeographical distribution, depositional setting and faunal associates that suggest that they were swimmers in the water column, living in dim light, relatively deep environments, above near bottom dysoxic/anoxic conditions. These myodocope faunas include some possible pelagic species sensu stricto, with widespread palaeogeographical (transoceanic) distribution, and some species that occupied hyperbenthic niches and were capable of making short incursions to the sediment to scavenge on carrion. These data support the model that Silurian myodocopes were pioneer pelagic ostracods.     

<Emphasis Type="Italic">Hirsutella proturicola</Emphasis> sp. nov. isolated from a proturan, <Emphasis Type="Italic">Baculentulus</Emphasis> densus (Protura,Hexapoda)

A new species of Hirsutella, H. proturicola, isolated from a subterranean proturan (Baculentulus densus; Protura, Hexapoda), is described and illustrated. Hirsutella proturicola is characterized by producing monoblastic phialides of 24–51.5 × 2.5–5 μm with a slightly roughened neck, fusiform and curved conidia of 9–18 × 2.5–4 μm that have a truncate base and a papillate projection often capped with sheath-like mucilage, and pluricellular, globose to subglobose chlamydospores of 21–48 × 21–41.5 μm. This species is morphologically and phylogenetically close to H. rostrata, an acaropathogenic species, but can be distinguished from the size of the phialides and the size and shape of the conidia.     

Water sources accessed by arid zone riparian trees in highly saline environments,Australia

The flow regimes of arid zone rivers are often highly variable, and shallow groundwater in the alluvial aquifers can be very saline, thus constraining the availability and quality of the major water sources available to riparian trees—soil water, shallow groundwater and stream water. We have identified water sources and strategies used by riparian trees in more highly saline and arid conditions than previously studied for riparian trees of arid zone rivers. Our research focused on the riparian species Eucalyptus coolabah, one of the major riparian trees of ephemeral arid zone rivers in Australia. The water sources available to this riparian tree were examined using δ¹⁸O isotope data from xylem, soil water, groundwater and surface water. Additionally, soil chloride and matric potential data were used to infer zones of water availability for root uptake. Despite the saline conditions, the trees used a mixture of soil water and groundwater sources, but they did not use surface water directly. The study identified three strategies used to cope with typically high groundwater and soil water salinities. Firstly, the trees preferentially grow in zones of most frequent flushing by infiltrating streamflow, such as the bank-tops of channels. Secondly, the trees limit water use by having low transpiration rates. Thirdly, the trees are able to extract water at very low osmotic potentials, with water uptake continuing at chloride concentrations of at least 20,000–30,000 mg L⁻¹.     

Flagelloscypha crassipilata sp. nov., a species from Peru with extremely thick surface hyphae and big basidia

Several scientists collected extensively cyphellaceous Hymenomycetes, Basidiomycota, with cup-shaped fruitbodies for the ‘Flora Neotropica’ project. A distinctive group within these fungi comprises genera with characteristically encrusted, non-ramified hyphae on the outer side of their fruitbodies, called surface hyphae. The genus Flagelloscypha, typically provided with whiplash-like distal ends on these hyphae, is one of the better known genera of this group. Here, we propose F. crassipilata as a new species, which is characterised by (3.5)4–6.5(8) μm thick surface hyphae, by extremely big basidia measuring 36–40(44) × 8.5–10.5 μm, and asymmetrically ovoid to asymmetrically ellipsoid, 10.5–12 × (4.5)5–5.5 μm large spores. Differences to similar species are discussed and a short introduction to genera related to Flagelloscypha is given.     

A microbiological survey of Montserrat Island hydrothermal biotopes

In March 1996, a survey of hydrothermal sites on the island of Montserrat was carried out. Six sites (Galway's Soufrière, Gages Upper and Lower Soufrières, Hot Water Pond, Hot River, and Tar River Soufrière) were mapped and sampled for chemical, ATP, and microbial analyses. The hydrothermal Soufrière sites on the slopes of the active Chances Peak volcano exhibited temperatures up to almost 100°C and were generally either mildly acidic at pH 5–7 or strongly acidic at pH 1.5–3, but with some hot streams and pools of low redox potential at pH 7–8. Hot Water Pond sites, comprising a series of heated pools near the western shoreline of the island, were neutral and saline, consistent with subsurface heating of entrained seawater. Biological activity shown by ATP analyses was greatest in near-neutral pH samples and generally decreased as acidity increased. A variety of heterotrophic and chemolithotrophic thermophilic organisms were isolated or observed in enrichment cultures. Most of the bacteria that were obtained in pure culture were familiar acidophiles and neutrophiles, but novel, iron-oxidizing species of Sulfobacillus were revealed. These species included the first mesophilic iron-oxidizing Sulfobacillus strains to be isolated and a strain with a higher maximum growth temperature (65°C) than the previously described moderately thermophilic Sulfobacillus species. Received: March 19, 2000 / Accepted: August 2, 2000     

Subterranean clover decline in permanent pastures in north-eastern Victoria

Experimental sites were established at two locations in north-eastern Victoria to define factors limiting the establishment and growth of Trifolium subterranean L. (subterranean clover). Liming the soil, seed inoculation and fungicide application were used in renovating subterranean clover pasture on two acidic soils (Longwood: brown/grey sandy loam DY 3.14 and Seymour: grey brown light clay DY 3.22, Northcote classification) with mean annual rainfall of 650 mm and 600 mm respectively. Soil acidity, low available soil phosphorus and plant disease were identified as factors limiting clover yield on these soils. Significant yield responses to lime (35–140%) were obtained with subterranean clover at both sites, with corresponding decreases in Al in the 0–10 cm soil horizon. Liming the soil, when combined with seed inoculation, increased the number and effectiveness of root nodules at both sites. Soil P available for plant growth was low at both sites (6.1 and 8.4 μg g⁻¹) resulting in sub-optimal P concentrations in the clover herbage (45 mmol kg⁻¹ at Longwood). Levels of root disease were low but Aphanomyces euteiches and Phytophthora clandestina (causal agents of lateral and tap root rot) were detected frequently on roots. Application of fungicide resulted in higher dry matter yields (p=0.05) at both sites. An assessment of the relative contributions of these limiting factors and the benefits to be obtained from better management would provide a clearer picture of the profitability and sustainability of this farming system.     

Molecular analysis of spatial variation of iron-reducing bacteria in riverine alluvial aquifers of the Mankyeong River

Alluvial aquifers are one of the mainwater resources in many countries. Iron reduction in alluvial aquifers is often a major anaerobic process involved in bioremediation or causing problems, including the release of As trapped in Fe(III) oxide. We investigated the distribution of potential iron-reducing bacteria (IRB) in riverine alluvial aquifers (B1, B3, and B6 sites) at the Mankyeong River, Republic of Korea. Inactive iron reduction zones, the diversity and abundance of IRB can be examined using a clone library and quantitative PCR analysis of 16S rRNA genes. Geobacter spp. are potential IRB in the iron-reducing zone at the B6 (9 m) site, where high Fe(II) and arsenic (As) concentrations were observed. At the B3 (16 m) site, where low iron reduction activity was predicted, a dominant clone (10.6%) was 99% identical in 16S rRNA gene sequence with Rhodoferax ferrireducens. Although a major clone belonging to Clostridium spp. was found, possible IRB candidates could not be unambiguously determined at the B1 (18 m) site. Acanonical correspondence analysis demonstrated that, among potential IRB, only the Geobacteraceae were well correlated with Fe(II) and As concentrations. Our results indicate high environmental heterogeneity, and thus high spatial variability, in thedistribution of potential IRB in the riverine alluvial aquifersnear the Mankyeong River.     

Patagonian ostracods as indicators of climate-related hydrological variables: implications for paleoenvironmental reconstructions in Southern South America

Different precipitation regimes across Patagonia generate an environmental gradient that is expected to reflect upon the solute composition and concentration of lake water through the ensuing differences in water balance. In turn, this hydrochemical gradient could influence the occurrence and distribution of ostracods in the area. A cluster analysis on hydrochemical data of 36 Southern Patagonian waterbodies shows that low salinity, bicarbonate-dominated waters characterize Andean and ecotonal lakes, located in the wetter part of the precipitation gradient, while their steppe counterparts, which receive a much lower precipitation input, are more saline, enriched in all major anions and sodium-dominated. Kruskal–Wallis tests followed by Mann–Whitney pairwise comparisons show statistically significant differences in the ostracod species each water type hosts, with L. patagonica, E. cecryphalium, P. smaragdina and P. incae being found in the more dilute waters characteristic of Andean and ecotonal lakes and Limnocythere rionegroensis in the mesohaline, evaporatively evolved waters typical of steppe lakes. Other species studied do not appear to have such distinct distributions, having been found throughout the range of conditions studied. These findings promote the use of the aforementioned ostracods as semi-quantitative paleohydrological indicators, which could improve paleoclimatic reconstructions in Patagonia.     

Molecular phylogenetic studies of Lachnum and its allies based on the Japanese material

Molecular phylogenetic studies were carried out based on ITS-5.8S rDNA, the D1–D2 region of the large subunit rRNA gene, RPB2, and combined data of D1–D2 and RPB2 as well as these three genes on 36 species among 7 genera for Lachnum and allied genera in the family Hyaloscyphaceae. In the combined data of all three regions, seven strongly supported clades were obtained. The same clades were also recognized in most of the trees based on each gene, and the combined data of D1–D2 and RPB2, although some of them were not strongly supported. Four clades represented Albotricha, Brunnipila, Incrucipulum, and Lachnellula, respectively, whereas Lachnum was distributed to the remaining three clades. The molecular phylogenies strongly supported a group of species with granulate hairs, and we suggest the concept of Lachnaceae should be restricted to these species. Based on the molecular phylogenetic analysis, three new combinations—Incrucipulum longispineum, I. radiatum, and Lachnellula pulverulentum from Lachnum—are proposed.     

Fruiting of putative ectomycorrhizal fungi under blue gum (Eucalyptus globulus) plantations of different ages in Western Australia

 The species richness of putative ectomycorrhizal (EM) fungi fruiting in blue gum (Eucalyptus globulus Labill.) plantations in Western Australia was investigated in relation to plantation age. Eleven plantations, 1–8 years old, were selected for study and two native Eucalyptus forest sites in the same region were chosen for comparison. Sporocarps of 44 species of putative EM fungi were collected from the 13 sites. Of these, 30 species were found in blue gum plantations. The number of fungal species was highly positively correlated with plantation age and inversely correlated with soil pH. Young plantations (1–5 years) had 2–9 fungal species and were overwhelmingly dominated by species of Laccaria and Scleroderma. In older plantations (6–8 years), the relative abundance of sporocarps of each species within the fungal community decreased, accompanied by an increase in the number of fungal species (12–17 per site). A brief survey of the two native eucalypt forests in this region revealed a much higher number of fungal species than that observed in plantations. In plantations, species of Descolea, Laccaria, Pisolithus and Scleroderma typically fruited in young plantations. Species of epigeous fungi of the genera Boletus, Cortinarius, Hydnum, Inocybe, Lactarius, Paxillus, Russula and hypogeous fungi, including species of Descomyces, Hysterangium and Mesophellia, were found only in older plantations, or in native forests. Some of the fungi that fruit in young plantations are now being evaluated for use in commercial spore inoculation programs to increase the species diversity of EM fungi in exotic eucalypt plantations. Accepted: 8 October 1998     

The most-probable-number enumeration of dichlobenil and 2,6-dichlorobenzamide (BAM) degrading microbes in Finnish aquifers

In groundwater subsurface deposits and a topsoil from five aquifers having 2,6-dichlorobenzamide (BAM) in water, we determined the most-probable-number (MPN) of 2,6-dichlorobenzonitrile (dichlobenil) and metabolite BAM degrading microorganisms. Dichlobenil and BAM were combined nitrogen sources in the MPN tubes, which were scored positive at concentrations <75% after 1 month incubation. Aerobic and anaerobic microbes degrading dichlobenil and BAM were common in samples in low numbers of 3.6–210 MPN g dw⁻¹. Additional degradation occurred in high MPN dilutions of some samples, the microbial numbers being 0.11–120 × 10⁵ MPN g dw⁻¹. The strains were isolated from low and high dilutions of one deposit, and degradation in pure cultures was confirmed by HPLC. According to the 16S rDNA sequencing, strains were from genera Zoogloea, Pseudomonas, Xanthomonas, Rhodococcus, Nocardioides, Sphingomonas, and Ralstonia. Dichlobenil (45.5 ± 18.3%) and BAM (37.6 ± 14%) degradation was low in the MPN tubes. Despite of microbial BAM degradation activity in subsurface deposits, BAM was measured from groundwater.