Phytoremediation of MTBE with hybrid poplar trees

This research investigates the fate and transport of methyl tert-butyl ether (MTBE) in phytoremediation, particularly the uptake and volatilization of MTBE in lab-scale hydroponic systems. The research reveals that MTBE was taken up by hybrid poplar cuttings and volatilized to the atmosphere. Volatilization of MTBE occurred through both stems and leaves. The concentration of MTBE in the transpiration stream declined exponentially with height, indicating that the uptake and volatilization along the stems are an important removal mechanism of MTBE in phytoremediation. Volatilization, via diffusion from the stems, has not been directly measured previously. No volatile MTBE metabolites were detected; however, mass balance closure and metabolite detection were not primary objectives of this study. The greatest amount of MTBE in plant biomass was associated with the woody stems from the previous year's growth, owing in part to the large biomass of stems. MTBE in the plant tissues appears to reach a steady state concentration and there does not appear to be an accumulation process that could lead to highly elevated concentrations relative to the groundwater source.     

Diurnal and annual rhythms in trees

Trees, perennial phanerophytes, display a rich variety of rhythmic phenomena. These are either due to exclusive environmental entrainment or due to the functioning of endogenous oscillators independent of the environment. Both types of rhythms are covered in this review. Purely environment controlled rhythms may be considered as a prelude to endogenous rhythms. Environment controlled rhythms discussed are (i) the diurnal rhythms of nyctinastic and heliotropic leaf movements and oscillatory phenomena of photosynthesis, such as the midday depression and Crassulacean acid metabolism (CAM), and (ii) the annual rhythms of annual growth ring formation, autumnal leaf senescence, over wintering mechanisms and flowering. Among the diurnal rhythms, nyctinastic movements and CAM are also free-running endogenous rhythms showing the operation of circadian clocks in trees. In leaf senescence, over wintering, and flowering control, photoperiod sensing is involved which suggests the participation of endogenous clocks. A question asked is if diurnal and annual rhythms are mechanistically correlated. Evidently, phenological phenomena based on photoperiodism (as dependent on measurement of night length) are co-ordinately regulated by the phytochrome system and the circadian clocks and many aspects of annual developments and over wintering are linked to photoperiodism. The existence in trees of circadian clock genes as known to be anchored in the genome of A. thaliana can be assessed by attempts of alignment with the sequenced genome of Populus or by isolating cDNA clones from trees to check them against the genome of A. thaliana. At extreme latitudes near the equator and north of the polar circle trees also display photoperiod-independent phenological phenomena. In the polar region, total irradiance of red and far red light could possibly be involved and the signalling pathway then involves phytochrome, and thus, may still be similar to that of photoperiodism. At the equator, total daily light irradiance received or sensing the dynamics of daily changes in solar irradiance are essential and it remains enigmatic whether signalling cascades are either attached to the circadian clocks in a still unknown way or totally independent of circadian clocks.     

Regulation of sulfate assimilation by nitrogen and sulfur nutrition in poplar trees

Plants cover their need for sulfur by taking up inorganic sulfate, reducing it to sulfide, and incorporating it into the amino acid cysteine. In herbaceous plants the pathway of assimilatory sulfate reduction is highly regulated by the availability of the nutrients sulfate and nitrate. To investigate the regulation of sulfate assimilation in deciduous trees we used the poplar hybrid Populus tremula × P. alba as a model. The enzymes of the pathway are present in several isoforms, except for sulfite reductase and -glutamylcysteine synthetase; the genomic organization of the pathway is thus similar to herbaceous plants. The mRNA level of APS reductase, the key enzyme of the pathway, was induced by 3 days of sulfur deficiency and reduced by nitrogen deficiency in the roots, whereas in the leaves it was affected only by the withdrawal of nitrogen. When both nutrients were absent, the mRNA levels did not differ from those in control plants. Four weeks of sulfur deficiency did not affect growth of the poplar plants, but the content of glutathione, the most abundant low molecular thiol, was reduced compared to control plants. Sulfur limitation resulted in an increase in mRNA levels of ATP sulfurylase, APS reductase, and sulfite reductase, probably as an adaptation mechanism to increase the efficiency of the sulfate assimilation pathway. Altogether, although distinct differences were found, e.g. no effect of sulfate deficiency on APR in poplar leaves, the regulation of sulfate assimilation by nutrient availability observed in poplar was similar to the regulation described for herbaceous plants.     

Sap tension in flooded trees and bushes of the Amazon

The water relations of the inundated forest of the Rio Negro in the Amazon have been investigated. The sap pressure in trees and bushes standing in several meters of water was found to average between −15 and −20 atm in sunshine. and above −10 in overcast. In rainy weather and at night. the pressure would remain close to ambient. Submerged leaves had ambient or sometimes very slightly positive pressure. Pinnate leaves of legumes folded when the pressure rose above a critical level characteristic of the species. Dehydration curves from full turgor to negative turgor showed 3 characteristic phases: A) a steep decline in pressure when the turgor disappeared; B) a linear decline at zero turgor proportional to the increase in osmotic pressure; and C) a steep decline as negative turgor (intracellular packing) developed. The tensions in the drowned forests were similar to those found in inundated plants of temperate lakes. and hence like many plants in a humid forest. However, in the daytime many flooded plants of the Amazon reached zero turgor without any external sign of wilting.     

Recovery of transgenic trees after electroporation of poplar protoplasts

Protoplasts from leaflets ofin vitro cuttings were electroporated in osmotically adjusted and buffered solutions containing plasmid DNA: pABD1, carrying thenptII gene for resistance to neomycin; pGH1, carrying a mutant acetolactate synthase gene,als, for resistance to sulfonylurea; and pGSFR781A, carrying a synthetic phosphinothricin acetyltransferase (pat) for resistance to phosphinothricin (Basta). Gene transfer was repeatedly efficient, without use of carrier DNA, in the range of one transformant for 10⁵ to 10⁴ protoplast-derived cell colonies. This was probably due to the high plating efficiency (30%) of protoplasts in our culture process. Selection for expression of foreign genes was applied in liquid medium and repeatedly achieved with 30 M paromomycin for NPTII, 200 nM chlorsulfuron for the mutant ALS ofArabidopsis and 25 M phosphinothricin for PAT expression. Integration of foreign genes into genomic DNA of resistant poplar trees was demonstrated by Southern blot hybridizations, which revealed that for some transformants practically no other part of the vector plasmid than the selected gene was integrated.Effective processes for protoplast culture, efficient selection at the cell colony stage and gene transfer will provide new possibilities in poplar breeding.     

Practical salinity management for leachate irrigation to poplar trees

Landfill leachate can be beneficially reused for irrigation of fiber crops with appropriate attention to nutrient and salinity management. The Riverbend Landfill in Western Oregon has been effectively practicing irrigation of landfill leachate to poplar trees since 1993. Over that time, the site has been adaptively managed to control salinity impacts to the tree crop while beneficially utilizing the applied water and nutrients during each growing season. Representative leachate irrigation water has ranged in concentration of total dissolved solids from 777 to 6,940 mg/L, chloride from 180 to 1,760 mg/L and boron from 3.2 to 7.3 mg/L. Annual leachate irrigation applications have also ranged between 102 and 812 mm/yr. Important conclusions from this site have included: 1) Appropriate tree clone selection and tree stand spacing, thinning, and harvest rotations are critical to maintaining a productive tree stand that is resilient and resistant to salt stress. The most effective combinations have included clones DN-34, OP-367, 184-411, 49-177, and 15-29 planted at spacing of 3.7-m x 1.8-m to 3.7-m x 3.7-m; 2) Leaf tissue boron levels are closely correlated to soil boron levels and can be managed with leaching. When leaf tissue boron levels exceed 200 to 250 mg/kg, signs of salt stress may emerge and should be monitored closely; 3) Salinity from leachate irrigation can be managed to sustain a healthy tree crop by controlling mass loading rates and providing appropriate irrigation blending if necessary. Providing freshwater irrigation following each leachate irrigation and targeting freshwater irrigation as 30 percent of total irrigation water applied has successfully controlled salt impacts to vegetation; and 4) Drip irrigation generally requires more careful attention to long-term soil salinity management than spray irrigation. Moving drip irrigation tubes periodically to prevent the formation of highly saline zones within the soil profile is important. In this paper, a fifteen year record of monitoring and operational data are presented that can be used by others in managing irrigation of saline water to poplar trees. When salinity is carefully managed, tree systems can help to provide sustainable leachate management solutions for landfills.     

Diurnal regulation of scent emission in rose flowers

Previous studies have shown diurnal oscillation of scent emission in rose flowers with a peak during the day (Helsper in Planta 207:88–95, 1998; Picone in Planta 219:468–478, 2004). Here, we studied the regulation of scent production and emission in Rosa hybrida cv. Fragrant Cloud during the daily cycle and focused on two terpenoid compounds, germacrene D and geranyl acetate, whose biosynthetic genes have been characterized by us previously. The emission of geranyl acetate oscillated during the daily light/dark cycle with a peak early in the light period. A similar daily fluctuation was found in the endogenous level of this compound and in the expression of its biosynthetic gene, alcohol acetyl transferase (RhAAT). The rhythmic expression of RhAAT continued under conditions of constant light or darkness, indicating regulation by the endogenous circadian clock. However, the accumulation and emission of geranyl acetate ceased under continuous light. Our results suggest that geranyl acetate production is limited by the level of its substrate geraniol, which is suppressed under constant light conditions. The emission of germacrene D also oscillated during the daily cycle with a peak early in the light period. However, the endogenous level of this compound and the expression of its biosynthetic gene germacrene D synthase (RhGDS) were constant throughout the day. The diurnal oscillation of germacrene D emission ceased under continuous light, suggesting direct regulation by light. Our results demonstrate the complexity of the diurnal regulation of scent emission: although the daily emission of most scent compounds is synchronized, various independently evolved mechanisms control the production, accumulation and release of different volatiles. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A semi-empirical model of methane emission from flooded rice paddy soils

Reliable regional or global estimates of methane emissions from flooded rice paddy soils depend on an examination of methodologies by which the current high variability in the estimates might be reduced. One potential way to do this is the development of predictive models. With an understanding of the processes of methane production, oxidation and emission, a semi-empirical model, focused on the contributions of rice plants to the processes and also the influence of environmental factors, was developed to predict methane emission from flooded rice fields. A simplified version of the model was also derived to predict methane emission in a more practical manner. In this study, it was hypothesized that methanogenic substrates are primarily derived from rice plants and added organic matter. Rates of methane production in flooded rice soils are determined by the availability of methanogenic substrates and the influence of environmental factors. Rice growth and development control the fraction of methane emitted. The amount of methane transported from the soil to the atmosphere is determined by the rates of production and the emitted fraction. Model validation against observations from single rice growing seasons in Texas, USA demonstrated that the seasonal variation of methane emission is regulated by rice growth and development. A further validation of the model against measurements from irrigated rice paddy soils in various regions of the world, including Italy, China, Indonesia, Philippines and the United States, suggests that methane emission can be predicted from rice net productivity, cultivar character, soil texture and temperature, and organic matter amendments.     

Screening of poplar trees for antibacterial,antifungal and antiviral activity

The leaves of poplar trees (genusPopulus) contain antimiorobial agents. These antibiotic properties are markedly influenced by interspecific and intraspecific hybridizations. Fractionation of the weakly active crude extracts results in more active antibacterial fractions. There are indications that the substances which inhibit antimicrobial effects during the testing procedure remain in the methanol fractions. In addition the results show that the antibacterial agents differ from the antifungal compounds, which both are different from the antiviral substances.     

Diurnal variation in the feeding pattern of rabbits

Laboratory rabbits maintained under controlled lighting and fed $\text{ad libitum}$ exhibit a weak but consistent diurnal fluctuation in feed intake. There are two major periods of eating; at the beginning and the end of the light period. This results in similar feed consumption for the light and dark periods. Water intake shows a similar diurnal variation to that of feed intake. If the normal lighting cycle is retarded by 6 hours, the animals adjust their diurnal rhythm of feeding behaviour to the new lighting cycle within 8 to 15 days. Comparative studies on rats are included.     

Diurnal pattern of rat pancreatic acinar cell replication

Fully differentiated pancreatic acinar cells can enter the cell cycle under appropriate conditions in the rat. The aim of this study was to analyse the diurnal pattern of acinar cell proliferation as a function of food intake and the release of cholecystokinin (CCK), because the peptide hormone CCK is a major physiological regulator of rat pancreatic acinar cell replication. Pancreatic acinar cell replication was quantitated using an antibody against the S-phase marker proliferating cell nuclear antigen (PCNA). In addition, acinar cells in S-phase were detected after injecting bromodeoxyuridine (BrdU) and subsequent immunohistochemical staining of BrdU-positive nuclei. Rat pancreata were analysed during the day under standard diet conditions, as well as after various schedules of fasting and refeeding and after the application of the CCK receptor antagonist L-364,718. Between 6 a.m. and 6 p.m., the PCNA labeling index was 4.4±0.9%, while between 9 p.m. and 3 a.m. the PCNA labeling index was elevated and reached peak values of 11.4% (mean value: 7.8±2.5%) around midnight. BrdU-positive cells also doubled around midnight, compared to the 9:00 a.m. value. In fasted rats, acinar cell proliferation was completely suppressed and this suppression could be overcome by injection of the CCK analog cerulein. In addition, the CCK antagonist L-364,718 led to the same results as fasting. Here we show for the first time that there is a diurnal pattern of pancreatic acinar cell proliferation in rats, which is dependent on food intake and is mediated by CCK.     

Isoprene emission protects photosynthesis in sunfleck exposed Grey poplar

In the present study, we combined transient temperature and light stress (sunfleck) and comparably analyzed photosynthetic gas exchange in Grey poplar which has been genetically modified in isoprene emission capacity. Overall, we demonstrate that for poplar leaves the ability to emit isoprene is crucial to maintain photosynthesis when exposed to sunflecks. Net CO₂ assimilation and electron transport rates were strongly impaired in sunfleck-treated non-isoprene emitting poplars. Similar impairment was not detected when the leaves were exposed to high light (lightflecks) only. Within 10 h non-isoprene emitting poplars recovered from sunfleck-related impairment as indicated by chlorophyll fluorescence and microarray analysis. Unstressed leaves of non-isoprene emitting poplars had higher ascorbate contents, but also higher contents of malondialdehyde than wild-type. Microarray analyses revealed lipid and chlorophyll degradation processes in the non-isoprene emitting poplars. Thus, there is evidence for an adjustment of the antioxidative system in the non-isoprene emitting poplars even under normal growth conditions.     

Options for mitigating methane emission from a permanently flooded rice field

Permanently flooded rice fields, widely distributed in south and south‐west China, emit more CH₄ than those drained in the winter crop season. For understanding CH₄ emissions from permanently flooded rice fields and developing mitigation options, CH₄ emission was measured year‐round for 6 years from 1995 to 2000, in a permanently flooded rice field in Chongqing, China, where two cultivations with four treatments were prepared as follows: plain‐cultivation, summer rice crop and winter fallow with floodwater layer annually (convention, Ch‐FF), and winter upland crop under drained conditions (Ch‐Wheat); ridge‐cultivation without tillage, summer rice and winter fallow with floodwater layer annually (Ch‐FFR), and winter upland crop under drained conditions (Ch‐RW), respectively. On a 6‐year average, compared to the treatments with floodwater in the winter crop season, the CH₄ flux during rice‐growing period from the treatments draining floodwater and planting winter crop was reduced by 42% in plain‐cultivation and by 13% in ridge‐cultivation (P < 0.05), respectively. The reduction of annual CH₄ emission reached 68 and 48%, respectively. Compared to plain‐cultivation (Ch‐FF), ridge‐cultivation (Ch‐FFR) reduced annual CH₄ emission by 33%, and which was mainly occurred in the winter crop season. These results indicate that draining floodwater layer for winter upland crop growth was not only able to prevent CH₄ emission from permanently flooded paddy soils directly in the winter crop season, but also to reduce CH₄ emission substantially during the following rice‐growing period. As an alternative to the completely drainage of floodwater layer in the winter crop season, ridge‐cultivation could also significantly mitigate CH₄ emissions from permanently flooded rice fields.     

Induction by nitrogen and low temperature of storage-protein synthesis in poplar trees exposed to long days

The synthesis of storage proteins in trees of poplar (Populus x canadensis Moench) could not only be induced by a shift from long-day to short-day conditions but also by either a low-temperature treatment or by nitrogen feeding under continuous long-day conditions. The synthesis of the protein did not depend on the cessation of growth and the formation of a terminal bud. The accumulation of the storage protein was in all cases preceded by a drastic increase in the level of the corresponding mRNA.Abbreviations cDNA copy DNA - kDA kilodalton     

Stomatal and non-stomatal limitations of photosynthesis in trees of a tropical seasonally flooded forest

Trees in the flooded forest of the Mapire River in Venezuela suffer a decrease in photosynthetic rate (A) when flood begins, which is reverted at maximum flood. Changes in A are accompanied by similar changes in stomatal conductance (g_s), and the possibility of changes in photosynthetic capacity is not ruled out. In order to understand how relative stomatal and non-stomatal limitations of photosynthesis are affected by flooding, we studied the seasonal changes in A and its response to intercellular CO₂ concentration in trees of Campsiandra laurifolia , Symmeria paniculata , Acosmium nitens and Eschweilera tenuifolia . Flooding caused in trees of C.   laurifolia and S.   paniculata a reduction in A, g_s, carboxylation efficiency and total soluble protein (TSP), whereas gas exchange in A.   nitens and E.   tenuifolia was more sensitive to drought. Under flooding, relative stomatal limitation (L_s) was on average half the highest, and relative non-stomatal limitation (L_ns) increased from the dry season to flooding. Under full flood, A, g_s and TSP regained high values. A was positively correlated to light-saturated electron transport rate, suggesting that part of the decrease in A under flooding was due to impairment of photosynthetic capacity. Under flooding, not only stomatal closure but also increased L_ns causes a reduction in photosynthesis of all four species, and a process of acclimation as flooding progresses allows gas exchange and related variables to regain high values.     

Diurnal changes in water content of the stems of apple trees, as influenced by irrigation

Abstract Groups of apple trees within an orchard were irrigated by either releasing a fine mist within the canopy or spraying water on the soil. Diurnal changes in the water content of the xylem were inferred from measurements of density made with a gamma probe. Transpiration rates were estimated from leaf temperatures, and water potentials and changes in radial dimension of the stem were recorded. Xylem water content and water potential declined each morning and recovered in the afternoon. Radial dimensions of the xylem followed a similar pattern, but the percentage change was very small in relation to the change in water content of the same tissue. The decline in water content is unlikely to have been caused by cavitation, as it was readily reversed in the afternoon. It is more likely to have been caused by changes in the volume of water occupying already-cavitated fibres or intercellular spaces. Water potential and xylem water content were highest in the mist-irrigated trees and least in the unirrigated controls.     

Measuring the impact of flooding on Amazonian trees: photosynthetic response models for ten species flooded by hydroelectric dams

Increasing areas of Amazonian forest are coming under flood stress due to dam construction and greater variability in river flood levels due to climate change. The physiological responses of Amazonian trees subjected to flooding are important to understand the consequences of these changes. Irradiance response curves for photosynthesis obtained from ten tropical tree species growing in flooded areas were used to fit three empirical models. The study was done in floodplains along the Uatumã River, both upstream and downstream of the Balbina Hydroelectric Dam in Brazil’s state of Amazonas (01°55′S; 59°28′W). Ten species were studied. Models compared were: non-rectangular hyperbola, rectangular hyperbola, and exponential. All models were quantitatively adequate for fitting the response of measured data on photosynthesis to irradiance for all ten species in the non-flooding and flooding periods. Considerable variation was found among the model estimates of maximum photosynthesis (P _nmax), dark respiration (R _d) and apparent quantum yield of photosynthesis (α). For photosynthesis, the two hyperbolas overestimated P _nmax while EXP presented more realistic values. For estimating R _d, RH presented the most realistic values. To avoid unrealistic value estimates of R _d, we recommend adding measured R _d values to the regressions. The results suggest that the EXP model presented the most realistic P _nmax and α values, and, in spite of less accuracy in fitting photosynthetic irradiance curves than the RH model, it can be recommended for accessing the information used in photosynthetic irradiance curves for the leaves of tropical trees growing in Amazonian floodplains or in areas that are artificially flooded by dams.