Population structure in a critically endangered arctic fox population: does genetics matter?

The arctic fox (Alopex lagopus) in Scandinavia is classified as critically endangered after having gone through a severe decline in population size in the beginning of the 20th century, from which it has failed to recover despite more than 65 years of protection. Arctic foxes have a high dispersal rate and often disperse over long distances, suggesting that there was probably little population differentiation within Scandinavia prior to the bottleneck. It is, however, possible that the recent decline in population size has led to a decrease in dispersal and an increase in population fragmentation. To examine this, we used 10 microsatellite loci to analyse genetic variation in 150 arctic foxes from Scandinavia and Russia. The results showed that the arctic fox in Scandinavia presently is subdivided into four populations, and that the Kola Peninsula and northwest Russia together form a large fifth population. Current dispersal between the populations seemed to be very low, but genetic variation within them was relatively high. This and the relative F(ST) values among the populations are consistent with a model of recent fragmentation within Scandinavia. Since the amount of genetic variation is high within the populations, but the populations are small and isolated, demographic stochasticity seems to pose a higher threat to the populations' persistence than inbreeding depression and low genetic variation.     

Evidence of opposing fitness effects of parental heterozygosity and relatedness in a critically endangered marine turtle?

How individual genetic variability relates to fitness is important in understanding evolution and the processes affecting populations of conservation concern. Heterozygosity–fitness correlations (HFCs) have been widely used to study this link in wild populations, where key parameters that affect both variability and fitness, such as inbreeding, can be difficult to measure. We used estimates of parental heterozygosity and genetic similarity (‘relatedness’) derived from 32 microsatellite markers to explore the relationship between genetic variability and fitness in a population of the critically endangered hawksbill turtle, Eretmochelys imbricata. We found no effect of maternal MLH (multilocus heterozygosity) on clutch size or egg success rate, and no single‐locus effects. However, we found effects of paternal MLH and parental relatedness on egg success rate that interacted in a way that may result in both positive and negative effects of genetic variability. Multicollinearity in these tests was within safe limits, and null simulations suggested that the effect was not an artefact of using paternal genotypes reconstructed from large samples of offspring. Our results could imply a tension between inbreeding and outbreeding depression in this system, which is biologically feasible in turtles: female‐biased natal philopatry may elevate inbreeding risk and local adaptation, and both processes may be disrupted by male‐biased dispersal. Although this conclusion should be treated with caution due to a lack of significant identity disequilibrium, our study shows the importance of considering both positive and negative effects when assessing how variation in genetic variability affects fitness in wild systems.     

Fertility History,Children’s Gender,and Post-Reproductive Survival in a Longevous Population

The question of whether mothers’ fertility history influences their post-reproductive survival has been addressed frequently in the scientific literature. Using data from Villagrande Strisaili, Sardinia, where longevity is higher than anywhere else in Europe, we analyzed the relationship between the fertility pattern of mothers who survived past age 50 (n = 539) and their post-reproductive lifespan. We find that, after adjustment for potential confounders (mothers’ birth cohort, survival of spouse), the mothers who on average delivered their children later displayed a reduced mortality risk (?2.9 percent for each additional year), supporting previously reported findings. We also find that a male-skewed offspring ratio was associated with decreased mortality risk of mothers, with longer survival of mothers who delivered their sons above age 35 (p = 0.005), a result not found for daughters. So far, no biological explanation has been suggested for the positive effect of delivering sons later in life. We conjecture that in our dataset stronger nonbiological factors such as gender-specific sociocultural and economic factors may have masked the negative effect reported in other populations, for which a biological explanation was proposed.     

Population structure and genetic diversity in Swainson’s Hawks (Buteo swainsoni): implications for conservation

Swainson’s Hawks (Buteo swainsoni) are large raptors with a breeding distribution extending across much of western North America where they were historically considered one of the most abundant raptors. Swainson’s Hawks have declined precipitously in many parts of their range during the 20th century, and the historical range in California has been much reduced. In the Central Valley of California (CV), Swainson’s Hawks exhibit behavioral and morphological characteristics apparently different from other regions. To describe the genetic diversity and population structure of Swainson’s Hawks throughout their range, 19 microsatellite loci and 416 base pairs of the mitochondrial control region were analyzed. Microsatellite diversity appears high throughout the contemporary range. A Bayesian model-based analysis of microsatellite genotypes revealed clusters associated with the CV and the Great Basin/Great Plains region of North America (GBGP) with overlap between regions. F _ST estimates suggest limited differentiation among Swainson’s Hawks with isolation by distance. A heterozygote excess indicated a recent reduction in effective population size of Swainson’s Hawks across all regions. Control region data revealed no population structure and provided evidence of historic population expansion in the GBGP. In the CV a weaker signature of population expansion was detected, possibly altered by recent declines. While genetic data suggests recent gene-flow across regions, apparent differences between the CV and GBGP in traits with potential fitness consequences (migratory behavior and morphology) along with marked decline in numbers in California call for careful conservation, management, and monitoring of Swainson’s Hawks in the CV.     

Conservation in Hine’s sight: the conservation genetics of the federally endangered Hine’s emerald dragonfly,Somatochlora hineana

Hine’s emerald dragonfly (Somatochlora hineana) is distributed in discrete fen and wet meadow habitats over its range from Ontario, Canada, to Missouri, USA. Habitat destruction in the vicinity of Chicago, IL, and other areas lead to its designation as an US federal endangered species in 1995. Our main goal was to delineate the population genetic structure of the species within the northern recovery unit centered on the Door Peninsula in Wisconsin and the southern recovery unit in the Des Plaines River Valley near Chicago, IL. Sites on the Door Peninsula, WI, are in a matrix of agricultural development and second-growth forest and were used as a best available approximation of a pristine system for the dragonfly. We nondestructively sampled 557 adults and larvae from 16 sites in Illinois, Michigan, and Wisconsin from 2008 through 2011 and used ten microsatellite markers to estimate levels of genetic variability, and genetic structure. Mean allelic richness across all sites and years was 5.03 (±0.64) and expected heterozygosity was 0.52 (±0.032). Northern and southern recovery units as designated in the original recovery plan were genetically distinct. We delineated two genetic populations in the northern unit and three within the southern including two disjunct sites.     

Evidence for multiple MHC class II β loci in New Zealand’s critically endangered kakapo, Strigops habroptilus

Immunologically important genes of the major histocompatibility complex (MHC) have been characterized in a number of avian species with the general finding of considerable variation in size and structural organization among organisms. A range of nonpasserines which represent early-diverging Neoave lineages have been described as having only one MHC class II β locus potentially leading to the conclusion that this is the ancestral condition. Here, we examine the monotypic, early-diverging, critically endangered kakapo, Strigops habroptilus, for allelic variation at MHC class II β exon 2, as part of species’ recovery efforts. We found two to four confirmed sequence variants per individual indicating the presence of more than one MHC class II β locus. Given the kakapo’s basal evolutionary status, evidence for multiple MHC class II β loci seems to counter the proposed mono-locus history of modern birds. However, MHC gene duplication, maintenance, and loss among and within bird species may confound avian relationships making it difficult to elucidate the ancestral state. This study adds essential data for disentangling the course of MHC structural evolution in birds.     

Population genetics,demographic and evolutionary history of the Dudley’s lousewort (Pedicularis dudleyi), a rare redwood forest specialist

Pedicularis dudleyi (Dudley’s Lousewort, Orobanchaceae) is an extremely rare plant endemic to the redwood forests of Central California. Until recently, the species was known only from three extant natural populations. However, in 2019, one of those populations was described as a novel species (P. rigginsiae D.J. Keil) based on morphological and ecological data leaving only two populations described as P. dudleyi. While little is known about the past distribution of the species, historical records have led to speculation that the species was once more widespread and may have suffered from habitat destruction as a result of widespread logging during the early twentieth century. We utilized a combination of ddRAD SNP and Sanger sequencing data to: (1) Test the morphological hypothesis that P. rigginsiae is distinct from P. dudleyi; (2) Describe the genetic diversity and population structure of P. dudleyi and; (3) Test the hypothesis that the species underwent a bottleneck corresponding with increased logging of redwood forests in the early twentieth century. Our results support the recognition of P. rigginsiae as distinct from P. dudleyi, increasing the conservation priority of both species. Genetic diversity statistics and analyses of genetic structure suggest that both populations of P. dudleyi are highly differentiated from each other with one population exhibiting unexpected substructure. Finally, demographic modeling supports a scenario where the contemporary rarity of the species is explained by a recent bottleneck.

     

Population studies and conservation of Jamaica’s endangered swallowtail butterfly Papilio (Pterourus) homerus

This is an 18-year study of the endangered Papilio (Pterourus) homerus, adding substantial information to our scanty knowledge of its ecology. The contraction of a once contiguous but narrow population on a single Caribbean island carries the serious threat of extinction. There are now two populations or probably metapopulations, effectively isolated from each other. The butterfly’s larvae feed on Hernandia catalpaefolia and H. jamaicensis, both endemic to Jamaica, and development takes ～84 days from egg to the emerged adult. Adult numbers fluctuate rapidly, with peaks in July/August each year. Egg distribution was studied at three spatial levels: the food item (leaf cluster), the patch (tree) and the habitat (each valley). Major causes of developmental mortality were Chrysonotomyia, a eulophid parasitoid of the eggs, and bacterial infection of the larvae and pupae. Critically, the mortality from this wasp was lower in undisturbed forest than in the area disturbed by agriculture, this finding having important consequences for conservation. Although there was no evidence of a decline in numbers over the last century, we believe this is an artefact due to collectors working only at the periphery of its distribution. Even assuming that its population densities have not changed, the contraction of its usable habitat implies a similar reduction in average numbers and the small populations are susceptible to disaster. The efforts of researchers, NGOs, and Government agencies have greatly increased the level of awareness, making the people in some key areas the ‘protectors of the species’.     

Species richness of exotic and endangered fishes in Japan’s reservoirs

We analyzed the patterns of total, endangered and exotic fish species richness in 80 reservoirs throughout Japan using Generalized Linear Models (GLMs) with variables of dam characteristics (e.g. reservoir size, isolated period, altitude, DO, pH, rainfall, and air temperature) and watershed characteristics (e.g. watershed area, human population, and land-use patterns). Exotic species richness was positively correlated with total species richness but negatively correlated with endangered species richness. Largemouth bass, rainbow trout, and bluegill were the three most widely distributed species, occupying 47.5, 37.5, and 33.8% of the reservoirs, respectively. The patterns of total and endangered species richness were largely explained by watershed area and annual air temperature. Exotic species richness was determined primarily by the proportion of developed areas within each watershed. Therefore, reservoirs in more developed areas tend to support more exotic fish species that in turn threaten endangered fish species more severely.

Population genetics of Blanding’s turtle (Emys blandingii) in the midwestern United States

Blanding’s turtle (Emys blandingii) has declined substantially in North America due to anthropogenic activities, leaving populations smaller and increasingly fragmented spatially. We sampled 212 turtles to evaluate variation at eight microsatellite loci within and among 18 populations of E. blandingii across its primary range in the midwestern United States (Illinois, Iowa, Minnesota, and Nebraska). All loci and populations were highly polymorphic. Our analyses also detected considerable genetic structure within and among the sampled localities, and revealed ancestral gene flow of E. blandingii in this region north and east from an ancient refugium in the central Great Plains, concordant with post-glacial recolonization timescales. The data further implied unexpected ‘links’ between geographically disparate populations in Nebraska and Illinois. Our study encourages conservation decisions to be mindful of the genetic uniqueness of populations of E. blandingii across its primary range.     

Population genetics of wild Hizikia fusiformis (Sargassaceae, Phaeophyta) along China’s coast

Hizikia fusiformis is one of the important commercially cultivated seaweeds in China. Inter-simple sequence repeats (ISSR) and sequence-related amplified polymorphism (SRAP) markers were used to assess genetic structure of nine wild H. fusiformis populations collected along the coast of China. Of the 255 bands generated by 21 ISSR primers, 99.61% were polymorphic and 99.71% of 344 bands amplified by 30 SRAP primers were polymorphic. The tested high genetic diversities show that the average Nei’s genetic diversity (H) were 0.1519 and 0.1624, and average Shannon’s information index (I) were 0.2248 and 0.2400 in ISSR and SRAP analyses, respectively. Unweighted pair group method with arithmetic mean (UPGMA) dendrograms of the nine populations were divided into two main groups. The ISSR and SRAP analyses values of gene differentiation (G _ST, 0.5955, 0.5486, respectively) indicate that high variation exists among the nine populations, likely due to external interferences and limitation of gene flow (N _m?=?0.3397, 0.4114). Our study indicated that human activities and herbivore overgrazing had influenced the natural Hizikia populations and that the understanding of population genetics would be helpful in sustainable utilization and biomass conservation of Sargassaceae resources.     

Breeding system of the critically endangered Lakela’s Mint and influence of plant height on pollinators and seed output

Understanding reproductive systems of rare plants is critical for conservation efforts. Lakela's Mint, Dicerandra immaculata Lakela var. immaculata, is an endangered plant endemic to an approximately 4.8-km long area in Florida, USA. We used an experimental garden and three populations of Lakela's Mint to determine: (1) what is the breeding system (autonomous, asexual, self-fertile, cross-fertile) and are insects necessary for reproduction; (2) which native and nonnative insect species visit flowers and is the frequency of visits to a plant influenced by its height; (3) does the number of flowers visited within a plant by individual insects differ among native and nonnative insect species and due to plant height; and (4) is seed output influenced by plant height? Our results indicate that the breeding system of Lakela's Mint was facultative outcrossing. Insect-pollinated flowers produced more seeds than flowers that reproduced autonomously or asexually. The honey bee Apis mellifera L., a nonnative species, was the most frequent visitor to plants and visited more flowers within plants than native pollinators, but its behavior was not influenced by plant height. Native pollinators such as Bombus impatiens Cresson were attracted more frequently to shorter plants, but visited fewer flowers than on taller plants. Despite having fewer total and pollinated flowers, shorter plants had a higher output of intact seeds than taller plants, which could be due to differences in efficiency between native and nonnative pollinators or other factors. Our results add insight into factors influencing seed output and interactions between pollinators and rare plants.     

Genetic differentiation of a critically endangered population of the limpet Patella candei candei d’Orbigny, 1840, in the Canary Islands

The adoption of measures to protect the viability of threatened populations should be supported by empirical data identifying appropriate conservation units and management strategies. The global population of the majorera limpet, P. candei candei d’Orbigny, 1840, is restricted to the Macaronesian islands in the NE Atlantic, including near-to-extinct and healthy populations in Fuerteventura and Selvagens, respectively. The taxonomic position, genetic diversity and intra- and interspecific relationships of these populations are unclear, which is hindering the implementation of a recovery plan for the overexploited majorera limpet on Fuerteventura. In this study, ddRAD-based genome scanning was used to overcome the limitations of mitochondrial DNA-based analysis. As a result, P. candei candei was genetically differentiated from the closely related P. candei crenata for the first time. Moreover, genetic differentiation was detected between P. candei candei samples from Selvagens and Fuerteventura, indicating that translocations from the healthy Selvagens source population are inadvisable. In conclusion, the majorera limpet requires population-specific management focused on the preservation of exceptional genetic diversity with which to face future environmental challenges.

     

Autoantibodies and Sjogren’s Syndrome in Multiple Sclerosis,a Reappraisal

Background

Rheumatologic diseases may cause neurologic disorders that mimic multiple sclerosis (MS). A panel of serum autoantibodies is often obtained as part of the evaluation of patients suspected of having MS.

Objectives

To determine, in light of recently revised diagnostic criteria for MS, neuromyelitis optica, and Sjogren’s Syndrome, if testing for autoantibodies in patients with a confirmed diagnosis of MS would reveal a frequency or demonstrate a clinical utility divergent from previous reports or lead to identification of undiagnosed cases of Sjogren’s Syndrome.

Methods

Convenience sample cross-sectional study of MS patients recruited from the OHSU Multiple Sclerosis Center.

Results

Autoantibodies were detected in 38% (35/91) of patients with MS and were not significantly associated with disease characteristics or severity. While four patients had SSA antibodies, none met diagnostic criteria for Sjogren’s Syndrome.

Conclusions

Rheumatologic autoantibodies are frequently found in MS patients and are not associated with disease severity or systemic rheumatologic disease. Our demonstration of the low specificity of these autoantibodies suggests that the diagnostic utility and cost-effectiveness of testing is not supported when there is strong clinical suspicion of MS and low clinical suspicion of rheumatologic disease.     

Can we bring Madagascar's critically endangered palms back from the brink? Genetics,ecology and conservation of the critically endangered palm Beccariophoenix madagascariensis

Madagascar has a highly distinctive flora and is one of the world biodiversity hot spots. There are more than 170 species of palms, the majority of which are vulnerable, endangered or critically endangered endemics. Palms are utilized for many human uses, many of which lead to plant death or seed harvesting. Combined with reduced populations resulting from extensive forest clearing, those species which are harvested from the wild are under additional threat of extinction. Species recovery programmes have the potential to save some of the most iconic species before it is too late. This study documented the current known populations of the critically endangered palm Beccariophoenix madagascariensis, a species utilized for both local and international purposes. The study specifically investigated the genetic diversity and inbreeding within populations and the potential differentiation between populations and with the newly described species B. alfredii . We found that despite critically small population sizes there was considerable genetic diversity within populations. We also found that ecologically and or geographically distinct populations were genetically distinct. Populations within 3 km of each other exhibited considerable gene flow, probably owing to seed dispersal. The populations were inbred but reproductive viability had been maintained. Conservation and recovery options are discussed. © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 154 , 589–608.     

Women’s work,child care,and helpers-at-the-nest in a hunter-gatherer society

Considerable research on helpers-at-the-nest demonstrates the positive effects of firstborn daughters on a mother’s reproductive success and the survival of her children compared with women who have firstborn sons. This research is largely restricted to agricultural settings. In the present study we ask: “Does ‘daughter first’ improve mothers’ reproductive success in a hunting and gathering context?” Through an analysis of 84 postreproductive women in this population we find that the sex of the first- or second-born child has no effect on a mother’s fertility or the survival of her offspring. We conclude that specific environmental and economic factors underlay the helpers-at-the-nest phenomenon.