The Microhabitat Distribution of the Arkansas River Shiner, Notropis girardi: A Habitat-mosaic Approach

I evaluated the microhabitat distribution of the Arkansas River shiner, Notropis girardi, a candidate species for protection under the Endangered Species Act over a two-year period. Seasonal microhabitat samples were taken at three localities along the South Canadian River in central Oklahoma. The microhabitats sampled were defined subjectively based on structural and substrate characteristics: adjacent to stream banks, underwater sand ridges, or exposed sand islands, and within stream pools, midchannels, or backwaters. At each microhabitat, the following physicochemical measurements were made: depth, temperature, current speed, dissolved oxygen, conductivity, and pH. Notropis girardi used many microhabitats and the patterns varied seasonally and ontogenetically. Contingency tests indicated that bank, island, and sandridge habitats had significantly more N. girardi than the others (p<0.01), whereas midchannel habitats were used significantly less often than other habitat types. A greater number of individuals were found in microhabitats defined by depths of 0–50cm and current speeds of 0–50cms^-1 although faster current speeds were used with high frequency. Selection of deeper water was only apparent during the summer. Juveniles selected shallow, slow flowing backwater habitat types more frequently than did adults. Habitats adjacent to underwater sand ridges were important to both adults and juveniles, but similar types such as islands and banks also were used. No single physicochemical feature was linked to high densities of this species. During its life cycle, N. girardi used most of the range of features encountered in the S. Canadian River; thus, maintenance of the riverine landscape (i.e. all of the attributes of rivers in the native range of N. girardi) will be necessary to ensure that this species has access to appropriate habitat types throughout its life cycle.     

Conservation genetic studies of the endangered Cape Fear Shiner, Notropis mekistocholas (Teleostei: Cyprinidae)

Genetic variation at ten microsatellite lociand one anonymous-nuclear locus was assayed forthree geographic samples of the criticallyendangered North American cyprinidNotropis mekistocholas (Cape Fear shiner). Despite low abundance of this species, therewas little suggestion of small populationeffects; allele diversity and heterozygositywere relatively high, F_IS values withinsamples were non-significant, and genotypeswere distributed in frequencies according toHardy-Weinberg expectations. Geneticdivergence among samples was minimal despitethe presence of dams, constructed in the early1900s, that separate the sample sites. Thissuggests that recent gene flow has beensufficient to inhibit genetic divergence orthat gene flow has been reduced but there hasbeen insufficient time for genetic divergenceto develop. Tests of heterozygosity excesswere non-significant, suggesting that N.mekistocholas in the localities sampledhave not undergone recent reductions ineffective population size. Future studiesemploying larger sample sizes to provide morerobust tests of population structure andtemporally separated samples to estimatecontemporaneous N _e are warranted.     

Proximate personhood as a standard for making difficult treatment decisions: imperiled newborns as a case study

... The standard of personhood is gaining increased attention and prominence. The essential claim is that only individuals with capacities for significant cerebral functioning possess a morally unique claim to existence. Persons are defined as individuals who are self-aware and capable of self-direction (Engelhardt), able to enter meaningful relationships (McCormick), capable of minimal independent existence (Shelp), and in possession of a minimal 20-40 I.Q. (Joseph Fletcher). These are "high standard" personhood positions (those holding higher-brain related criteria). It is a commonplace with most such positions that newborns -- all newborns -- are not, strictly speaking, persons. That is, newborns are not self-aware, intentionally choosing individuals.... The thesis of this essay is that a developing individual's right to life increases as he or she approaches the threshold of personal life. That is, the more a newborn approximates -- or is proximate to -- undisputed personhood (e.g. the status of readers of this essay), the greater his or her claim to life. The two pivotal criteria for determining personhood are the potentiality for and development toward becoming an undisputed personal being. I am presupposing, for purposes of argument, that the handicapped infant would not be an excessive familial burden or an inordinate financial load for society, one an ancient and the other a modern criterion. That condition granted, this essay contends that if an imperiled newborn is reasonably projected to reach at least minimal personal capacity, treatment should be given.     

Evaluating species nonmonophyly as a trait affecting genetic diversity: a case study of three endangered species of Antirrhinum L. (Scrophulariaceae)

Molecular markers are routinely used to assess levels of diversity within and among populations, particularly with regard to species of conservation concern. However, when interpreting the level and partitioning of diversity observed, an implicit assumption is often made that the populations of the species in question form a monophyletic group. We tested this assumption in three endemics of Antirrhinum (A. charidemi, A. subbaeticum, and A. valentinum) using 79 nuclear [internal transcribed spacer (ITS)] and 85 plastid (psbA-trnH, trnT-trnL, trnK-matK, trnS-trnG) sequences representing multiple accessions of each of 24 Antirrhinum species (single accession of A. cirrhigerum). These species share six life history traits implicated in levels of genetic diversity, and have been the subject of previous population genetic studies. Populations of all three species formed monophyletic groups on ITS analysis. In contrast, none of the three species formed monophyletic groups on plastid sequence analysis: populations of A. charidemi fall in a monophyletic group including one accession of A. mollissimum, populations of A. subbaeticum form a polyphyletic group with plastid sequences shared with A. pulverulentum, and populations of A. valentinum are unresolved within a clade containing six other species. Lack of monophyly using plastid sequences is interpreted as a combination of shared ancestral polymorphism and hybridization in a reticulate evolutionary history of these species. Monophyly in the ITS tree may reflect a more recent sequence homogenization. We draw attention to the evaluation of species monophyly alongside the contribution of other life history traits in the historical interpretation of the level and partitioning of genetic diversity, and its use in recommendations for species conservation programs.     

Ultrastructural and Cytochemical Observations on Sporogenesis of Myxobolus sp. (Myxosporida: Myxobolidae) from the Common Shiner Notropis cornutus*

SYNOPSIS. The structure and cytochemistry of spores of Myxobolus sp. from plasmodia which occur in the gill filaments of the common shiner Notropis cornutus were studied by light microscopy and by scanning and transmission electron microscopy. The thin-walled valves of the pyriform spores are thickened in the lateral sutural and apical regions. Mucous material is associated predominantly with the posterior end of many spores. The plasmodium is surrounded by a syncytial wall bounded by 2 membranes. Pinocytotic channels are formed by the inner membrane and numerous dense vesicles are pinched off at the distal ends of the channels. Sporogenesis is initiated by the envelopment of one vegetative cell by another. The larger, enveloped cell divides to form a disporous pansporoblast, which contains 2 pairs of capsulogenic and valvogenic cells and 2 binucleate sporoplasm cells. Each capsular primordium and connecting external tubule gives rise to a polar capsule which houses a helically coiled polar tubule. The apical end of each polar capsule is plugged by a stopper. The valvogenic cells surround the capsulogenic and posteriorly situated sporoplasm cells to form the spore valves. Iodinophilic (glycogen) inclusions were not seen in spores stained with iodine or Best's carmine. A darkly stained band was observed around the posterior region of most spores stained with Best's carmine. In the electron microscope large aggregates of β glycogen particles were seen in the cytoplasm of sporoplasm cells in mature spores.     

Ostracoda (Crustacea) as indicators for surface water quality: a case study from the Ledra River basin (NE Italy)

Wastewater discharges associated with urbanisations, farming activities and industry may dramatically reduce the ecological health of river ecosystems. During the reconstruction of the Friuli Venezia Giulia region following the 1976 earthquake, a lot of resources were used to build large numbers of wastewater treatment plants to minimize the impact of human activities on lotic ecosystems. Their efficiency is usually assessed through monitoring of the physical and chemical environment near the discharge point. However, discontinuous monitoring of the abiotic environment may fail to detect periodic malfunctioning and do not recognize indirect effects on the ecosystem. We assessed the potential of an alternative approach to assess the impact of wastewater discharges, based on the monitoring of ostracod density, richness and community composition. We repeatedly measured physical, chemical and microbial parameters and collected ostracod samples at stations up- and downstream from wastewater discharge points scattered over a 21-km stretch of the Ledra River (NE Italy). The results indicate that monitoring ostracods is a potentially valuable approach, for two reasons. Communities appeared to be well differentiated even in the small spatial area of this study, indicating that they can provide sufficient resolution to pick up even minor impacts. Secondly, despite the seasonal succession in species composition, spatial differentiation was consistent over time, suggesting that ostracods provide a time-integrated picture of the water quality. The traditional approach failed to detect any consistent impact of wastewater discharges, apart from an ambiguous increase in nutrient levels. The density and/or richness of the ostracod communities was altered by some wastewater discharges, but not by others. We identified a general trend for wastewater discharges to systematically replace regionally rare ostracod species with common species. In particular, the species Ilyocypris inermis was very sensitive to discharges, and may be used as an indicator species for good ecosystem health.     

Resolving species boundaries in the critically imperiled freshwater mussel species,Fusconaia mitchelli (Bivalvia: Unionidae)

Species are a fundamental unit of biology, and defining accurate species boundaries is integral to effective conservation and management of imperiled taxa. Freshwater mussels (Bivalvia: Unionidae) are among the most imperiled groups of organisms in North America, yet species boundaries remain uncertain for many taxa. The False Spike, Fusconaia mitchelli (Simpson in Dall, 1895), is a freshwater mussel considered to be endemic to central Texas (Brazos, Colorado, and Guadalupe drainages). Recent research revealed significant intraspecific genetic variation between geographically separated populations of F. mitchelli, which could be indicative of speciation; however, small sample sizes for several of the populations precluded formal taxonomic revision. Here, we increase taxon sampling and use multilocus DNA sequence data and traditional morphometrics to re‐evaluate species boundaries in F. mitchelli. We sequenced three loci: the protein‐coding mitochondrial DNA genes cytochrome c oxidase subunit 1 and NADH dehydrogenase 1, and the nuclear internal transcribed spacer 1. Phylogenetic analyses depicted deep genetic divergence between F. mitchelli in the Guadalupe and those in the Brazos and Colorado drainages, which was further supported by available biogeographic information. Morphometric analyses and coalescent‐based species delimitation models integrating both DNA sequence and morphological data provided strong support for the divergence observed between the two geographically isolated clades of F. mitchelli. Based on these results, we revise taxonomy accordingly by elevating the junior synonym Fusconaia iheringi (Wright, 1898) to represent the Brazos and Colorado populations and restrict the distribution of F. mitchelli to the Guadalupe River drainage. Our findings may impact pending management decisions to protect F. mitchelli under the U.S. Endangered Species Act.     

Regional population structure of the endangered Bridle Shiner (<Emphasis Type=Italic>Notropis bifrenatus</Emphasis>)

In the last 100 years, the Bridle Shiner has declined over significant parts of its range. We used mitochondrial and nuclear microsatellite markers to investigate population structure of this species. Tissue samples were collected from populations in six drainages in PA, NJ, NY and CT. One predominant haplotype was observed in the Delaware, Housatonic, Passaic, and Raritan specimens. Specimens from the Hudson and St. Lawrence drainages had a separate unique haplotype. Microsatellite loci revealed low within-population genetic diversity and pairwise population comparisons of allelic divergence showed significant genetic differences among most drainages. Population structure analysis of microsatellite loci recover the same population clusters inferred using mtDNA. Within the Delaware drainage, there was significant differentiation among areas separated by 128 km. Several alternate scenarios of population divergence and population bottlenecks were investigated using approximate Bayesian computing. These supported a scenario with a bottleneck occurring in the ancestral population of Bridle Shiner followed by recent divergence of Northern and Southern drainages.     

Potential of microsatellites for individual assignment: the North Atlantic redfish (genus Sebastes) species complex as a case study

We used the four redfish taxa (genus Sebastes) from the North Atlantic to evaluate the potential of multilocus genotype information obtained from microsatellites in assigning individuals at two different levels of group divergence. We first tested the hypothesis that microsatellites can diagnostically discriminate individual redfish from different groups. Second, we compared two different methods to quantify the effect of number of loci and likelihood stringency levels on the power of microsatellites for redfish group membership. The potential of microsatellites to discriminate individuals from different taxa was illustrated by a shared allele distance tree in which four major clusters corresponding to each taxa were defined. Concomitant with this strong discrimination, microsatellites also proved to be powerful in reclassifying specimens to the taxon of origin, using either an empirical or simulated method of estimating assignment success. By testing for the effect of both the number of loci and the level of stringency on the assignment success, we found that 95% of all specimens were still correctly reclassified with only four loci at the most commonly used criterion of log0. In contrast, the results obtained at the population level within taxa highlighted several problems of assignment that may occur at low levels of divergence. Namely, a drastic decrease of success with increasing stringency illustrated the lack of power of our set of loci. Strong discrepancy was observed between results obtained from the empirical and simulated methods. Finally, the highest assignment success was obtained when reducing the number of loci used, an observation previously reported in studies of human populations.     

Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin,USA

Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish (Polyodon spathula) at a stream‐segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large‐river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AIC_C‐selected parameterization. Although all models had similarly high performance and evaluation metrics, the AIC_C‐selected models were more inclusive of westward‐situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.     

Structure and genetic variability of golden mussel (Limnoperna fortunei) populations from Brazilian reservoirs

The golden mussel, Limnoperna fortunei a highly invasive species in Brazil, has generated productive, economical, and biological impacts. To evaluate genetic structure and variability of L. fortunei populations present in fish farms in the reservoirs of Canoas I (CANFF), Rosana (ROSFF), and Capivara (CAPFF) (Paranapanema River, Paraná, Brazil), eight microsatellite loci were amplified. Five of those eight loci resulted in 38 alleles. The observed heterozygosity (Ho) was lower than the expected heterozygosity (He) in all populations, with a deviation from the Hardy–Weinberg equilibrium (HWE). The average value for the inbreeding coefficient (Fis) was positive and significative for all populations. There was higher genetic variability within populations than among them. The fixation index (Fst) showed a small genetic variability among these populations. The occurrence of gene flow was identified in all populations, along with the lack of a recent bottleneck effect. The clustering analysis yielded K = 2, with genetic similarity between the three populations. The results demonstrate low genetic structure and suggest a founding population with greater genetic variability (ROSFF). Our data point to the possible dispersal of L. fortunei aided by anthropic factors in the upstream direction. It was concluded that the three populations presented a unique genetic pool for Paranapanema River, with occurrence of gene flow.     

入侵种加拿大一枝黄花对土壤特性的影响

生物入侵已给人类社会带来了巨大的环境和经济损失,但关于植物入侵对生态系统的影响后果还知之甚少。土壤是生态系统的重要组成部分,植物入侵对土壤特性的影响已引起了生态学家的普遍关注。我们将原产北美的入侵杂草加拿大一枝黄花(Solidagocanadensis)和同属土著植物一枝黄花(S.decurrens)种植在具有相同利用历史的土壤中,通过检测生长后期不同植物下土壤特性的差异来研究加拿大一枝黄花的入侵后果。测定的土壤特性包括pH值、总碳、总氮、土壤有机质、硝态氮、铵态氮、净铵化速率、净硝化速率和净矿化速率等。野外选取了加拿大一枝黄花的典型入侵地上海江湾绿地进行土壤特性调查作为辅证。移栽实验和野外调查得到了基本一致的结果:加拿大一枝黄花调节了土壤pH值,增加了总碳、氮库和有机质库,降低了铵氮库和硝氮库。加拿大一枝黄花还促进了微生物的矿化速率和铵化速率,这表明该物种提高了土壤无机氮和铵氮的供给。控制无机氮浓度和无机氮形式的独立实验表明,高氮供给和富铵氮条件有利于加拿大一枝黄花的生长。本研究不仅为外来植物入侵后果的评估提供实验证据,而且为植物成功入侵的机制探索提供思路。     

Adaptive and maladaptive genetic diversity in small populations: Insights from the Brook Charr (Salvelinus fontinalis) case study

Investigating the relative importance of neutral versus selective processes governing the accumulation of genetic variants is a key goal in both evolutionary and conservation biology. This is particularly true in the context of small populations, where genetic drift can counteract the effect of selection. Using Brook Charr (Salvelinus fontinalis) from Québec, Canada, as a case study, we investigated the importance of demographic versus selective processes governing the accumulation of both adaptive and maladaptive mutations in closed versus open and connected populations to assess gene flow effect. This was achieved by using 14,779 high‐quality filtered SNPs genotyped among 1,416 fish representing 50 populations from three life history types: lacustrine (closed populations), riverine and anadromous (connected populations). Using the PROVEAN algorithm, we observed a considerable accumulation of putative deleterious mutations across populations. The absence of correlation between the occurrence of putatively beneficial or deleterious mutations and local recombination rate supports the hypothesis that genetic drift might be the main driver of the accumulation of such variants. However, despite a lower genetic diversity observed in lacustrine than in riverine or anadromous populations, lacustrine populations do not exhibit more deleterious mutations than the two other history types, suggesting that the negative effect of genetic drift in lacustrine populations may be mitigated by that of relaxed purifying selection. Moreover, we also identified genomic regions associated with anadromy, as well as an overrepresentation of transposable elements associated with variation in environmental variables, thus supporting the importance of transposable elements in adaptation.     

Comparative analysis of three species populations of Profundulus (Teleostei: Cyprinodontiformes) using two genetic markers

Background and aims: The fish Family Profundulidae is endemic in south-southeast Mexico, with five known species. The species-level analysis of the genus based on morphological characters is insufficient and complex due to increased phenotypic and intraspecific variation. This variation might be owed to the existence of yet undescribed forms. Materials and methods: In the present study, the genetic composition of three species of the State of Chiapas, Mexico, is compared by examining different populations of the species Profundulus candalarius, Profundulus labialis, and Profundulus punctatus. Results: We identified specimens from 16 localities and sequenced mitochondrial DNA representing partial regions of the cytochrome b and cox1 genes. Conclusion: The results suggest an extreme divergence of the populations of P. labialis from El Sabinal.