Cell lineage relationships in Drosophila melanogaster: The relationships of cuticular to internal tissues

We have studied cell lineages within several internal structures and have also studied the relationship of such internal lineages to cuticular structures. Such observations were carried out by coupling various cuticular markers with enzyme or morphological markers for internal tissues and using these in both somatic recombination and Minute-gynandromorph manipulations. We have further explored the relationships among cuticular and internal tissues by studying the impact of mutations of the bithorax gene complex on cuticular structures and the internal organs which underly them. In brief, we are unable to demonstrate the existence of “compartments” in the internal tissues examined; we have shown that the cuticular and internal structures examined in this study are, in most cases, not demonstrably related in a clonal sense. Additionally, we show that changes in the internal tissues examined here in response to mutations in the bithorax complex are either not detected by our methods of analysis or are very different from the well-characterized responses of the imaginal disc derivatives.     

Ultrastructure of a possible new type of crustacean cuticular strain receptor in Carcinus maenas (crustacea,decapoda)

A hitherto unknown sensillum type, the “intracuticular sensillum” was identified on the dactyls of the walking legs of the shore crab, Carcinus maenas. Each sensillum is innervated by two sensory cells with dendrites of “scolopidial” (type I) organization. The ciliary segment of the dendrite is 5–6 μm long and contains A-tubules with an electron-dense core and dynein arm-like protuberances; the terminal segment is characterized by densely packed microtubules. The outer dendritic segments pass through the endo- and exocuticle enclosed in a dendritic sheath and a cuticulax tube (canal), which is suspended inside a slit-shaped cavity by cuticular lamellae. The dendrites and the cavity terminate in a cupola-shaped invagination of the epicuticle. External cuticular structures are lacking. Three inner and four to six outer enveloping cells are associated with each intracuticular sensillum. The innermost enveloping cell contains a large scolopale that is connected to the ciliary rootlets inside the inner dendritic segments by desmosomes. Scolopale rods are present in enveloping cell 2. Since type I dendrites and a scolopale are regarded as modality-specific structures of mechanoreceptors, and since no supracuticular endorgan is present, the intracuticular sensilla likely are sensitive to cuticular strains. The intracuticular sensilla should be regarded as analogous to insect campaniform sensilla and arachnid slit sense organs.     

Ontogenesis of trichome-like cavities in Dictamnus dasycarpus

The ontogeny of a special type of glandular hairs, namely the trichome-like cavities in Dictamnus dasycarpus, characterized by many morphological similarities to non-glandular hairs, capitate glandular hairs, and secretory cavities, was studied using light and electron microscopy. These trichome-like cavities originate from a single, initial epidermal cell that undergoes a periclinal division, with one cell developing into the internal cells and the other into the outer, epidermal cells. A beak-shaped apex is formed on the head of the trichome-like cavity. The histochemical test shows that the trichome-like cavities are important sites for lipid production. By ultrastructural analysis it becomes evident that formation of these trichome-like cavities starts with a disorganization of the cytoplasm that is accompanied by formation of odd shaped nuclei with condensed chromatin. The process continues bringing about plasmolytic processes, and disintegration of the plasma membrane system follows leading finally to autolysis, when mitochondria and degenerated plastids with disorganized membrane systems are engulfed by vacuoles, multivesicular bodies, and double-membranous autophagosomes within the vacuoles. A strong structural twist and swelling of the internal cell walls ultimately leads to complete breakdown of the structures. Nuclei of the inner internal cells within the trichome-like cavity become TUNEL-positive and DAPI-negative first; later this is detected also in the outer internal cells, indicating a centrifugal nuclear degradation process. On the basis of this work, it can be assumed that the lysigenous formation of the trichome-like cavity is a typical programmed cell death process.     

Localization of the Transpiration Barrier in the Epi- and Intracuticular Waxes of Eight Plant Species: Water Transport Resistances Are Associated with Fatty Acyl Rather Than Alicyclic Components

Plant cuticular waxes play a crucial role in limiting nonstomatal water loss. The goal of this study was to localize the transpiration barrier within the layered structure of cuticles of eight selected plant species and to put its physiological function into context with the chemical composition of the intracuticular and epicuticular wax layers. Four plant species (Tetrastigma voinierianum, Oreopanax guatemalensis, Monstera deliciosa, and Schefflera elegantissima) contained only very-long-chain fatty acid (VLCFA) derivatives such as alcohols, alkyl esters, aldehydes, and alkanes in their waxes. Even though the epicuticular and intracuticular waxes of these species had very similar compositions, only the intracuticular wax was important for the transpiration barrier. In contrast, four other species (Citrus aurantium, Euonymus japonica, Clusia flava, and Garcinia spicata) had waxes containing VLCFA derivatives, together with high percentages of alicyclic compounds (triterpenoids, steroids, or tocopherols) largely restricted to the intracuticular wax layer. In these species, both the epicuticular and intracuticular waxes contributed equally to the cuticular transpiration barrier. We conclude that the cuticular transpiration barrier is primarily formed by the intracuticular wax but that the epicuticular wax layer may also contribute to it, depending on species-specific cuticle composition. The barrier is associated mainly with VLCFA derivatives and less (if at all) with alicyclic wax constituents. The sealing properties of the epicuticular and intracuticular layers were not correlated with other characteristics, such as the absolute wax amounts and thicknesses of these layers.The plant cuticle is one of the major adaptations of vascular plants for life in the atmospheric environment. Accordingly, the primary function of cuticles is to limit nonstomatal water loss and, thus, to protect plants against drought stress (Burghardt and Riederer, 2006). However, plant cuticles also play roles in minimizing the adhesion of dust, pollen, and spores (Barthlott and Neinhuis, 1997), protecting tissues from UV radiation (Krauss et al., 1997; Solovchenko and Merzlyak, 2003), mediating biotic interactions with microbes (Carver and Gurr, 2006; Leveau, 2006; Hansjakob et al., 2010, 2011; Reisberg et al., 2012) as well as insects (Eigenbrode and Espelie, 1995; Müller and Riederer, 2005), and preventing deleterious fusions between different plant organs (Tanaka and Machida, 2013).Cuticles are composite (nonbilayer) membranes consisting of an insoluble polymer matrix and solvent-soluble waxes. The polymer matrix (MX) is mainly made of the hydroxy fatty acid polyester cutin (Nawrath, 2006) and also contains polysaccharides and proteins (Heredia, 2003). In contrast, cuticular waxes are complex mixtures of aliphatic compounds derived from very-long-chain fatty acids (VLCFAs) with hydrocarbon chains of C₂₀ and more (Jetter et al., 2007). Wax quantities and compositions vary greatly between plant species and, in many cases, even between organs and developmental stages. Diverse VLCFA derivatives can be present, including free fatty acids, aldehydes, ketones, primary and secondary alcohols, alkanes, and alkyl esters. Besides, the cuticular waxes of many plant species also contain cyclic compounds such as triterpenoids and aromatics.In order to characterize the physiological function of cuticular waxes, methods have been developed for the isolation of astomatous cuticles and the measurement of transpiration rates under exactly controlled conditions, so that well-defined physical transport parameters such as permeances and resistances can be determined and compared across species and organs (Schönherr and Lendzian, 1981; Kerstiens, 1996; Riederer and Schreiber, 2001; Lendzian, 2006). With these methods, it was demonstrated that the cuticular water permeance increases by up to 3 orders of magnitude upon wax removal, thus showing the central role of waxes as a transpiration barrier (Schönherr, 1976). Permeances for water determined so far with astomatous isolated leaf cuticular membranes (CMs) or in situ leaf cuticles range over 2.5 orders of magnitude, from 3.63 × 10⁻⁷ m s⁻¹ (Vanilla planifolia) to 7.7 × 10⁻⁵ m s⁻¹ (Maianthemum bifolium; Riederer and Schreiber, 2001).The species-dependent differences of both wax composition and permeance led to a search for correlations between cuticle structure and function. If such a structure-function relationship could be established, then it would become possible to select or alter wax composition in order to improve cuticle performance in crop species (Kosma and Jenks, 2007). However, all attempts to understand cuticle permeance based on cuticle composition have failed so far: correlations between wax amounts and permeances could not be established, contrary to the common assumption that thicker wax layers must provide better protection against desiccation (Schreiber and Riederer, 1996; Riederer and Schreiber, 2001). Similarly, a correlation between wax quality (i.e. the relative portions of its constituents) and permeance could also not be established to date (Burghardt and Riederer, 2006). It is not clear how certain wax components contribute to the vital barrier function of the cuticle.Previous attempts to establish wax structure-function relationships may have failed because only bulk wax properties were studied and important effects of substructures were averaged out. However, distinct compartments of wax exist within the cuticle, most prominently as a layer of intracuticular wax embedded within the MX and a layer of epicuticular wax deposited on the outer surface of the polymer (Jeffree, 2006). Over the last years, methods have been developed that allow the selective removal of epicuticular wax by adhesive surface stripping, followed by equally selective extraction of intracuticular wax (Jetter et al., 2000; Jetter and Schäffer, 2001). Chemical analyses showed that, for most plant species investigated to date, both wax layers have distinct compositions (Buschhaus and Jetter, 2011). The most pronounced differences between the layers were found for the triterpenoids, which were localized predominantly (or even exclusively) in the intracuticular wax. These findings raised the possibility that the chemically distinct wax layers might also have distinct functions, leading back to the long-standing question of whether the water barrier function is exerted by the intracuticular and/or the epicuticular wax. There are only scant data to answer this question so far, mainly because methods allowing a distinction between epicuticular and intracuticular waxes were established only recently. Using these sampling techniques, it was recently found that, for leaves of Prunus laurocerasus, the epicuticular wax layer does not contribute to the transpiration barrier (Zeisler and Schreiber, 2016). In contrast, it had been reported that removal of the epicuticular wax layer from tomato (Solanum lycopersicum) fruit caused an approximately 2-fold increase in transpiration, suggesting that, in this species, the epicuticular layer constitutes an important part of the barrier (Vogg et al., 2004). Based on these conflicting reports, it is not clear to what extent the intracuticular or the epicuticular waxes contribute to the sealing function of the plant skin.The goal of this study was to localize the transpiration barrier within the cuticular membrane of selected plant species and to put the physiological function into context with the chemical composition of both the epicuticular and intracuticular wax layers. To this end, we selected eight species from which leaf cuticles could be isolated and methods for step-wise wax removal could be applied without damaging the cuticle. Preliminary studies had shown that the adaxial cuticles on leaves of Citrus aurantium (Rutaceae), Euonymus japonica (Celastraceae), Clusia flava (Clusiaceae), Garcinia spicata (Clusiaceae), Tetrastigma voinierianum (Vitaceae), Oreopanax guatemalensis (Araliaceae), Monstera deliciosa (Araceae), and Schefflera elegantissima (Araliaceae) were astomateous and showed wide chemical diversity. Therefore, these eight species were selected to address the following questions: (1) What are the amounts of epicuticular and intracuticular waxes? (2) Do compositional differences exist between the layers? (3) Where are the cuticular triterpenoids located? (4) How much do the epicuticular and intracuticular waxes contribute to the transpiration barrier? (5) Is the barrier associated with certain components of the intracuticular or epicuticular waxes?     

Leaflet secretory structures of five taxa of the genus Zornia J.F. Gmel. (Leguminosae, Papilionoideae, Dalbergieae) and their systematic significance

A survey of the secretory structures of leaflets has been carried out for five taxa of the genus Zornia J.F. Gmel. to assess possible taxonomic value of the glands, taking into account that these taxa, Zornia curvata Mohlenbr., Z. gemella Willd. ex Vogel, Z. glabra Desv., Z. latifolia Sm. and Z. reticulata Sm., have overlapping diagnostic characters. The leaflet secretory structures of the five studied taxa of Zornia were mucilage epidermis, mucilage cavities, and idioblasts secreting phenolic compounds. Mucilage epidermis is found in all five aforementioned taxa. Mucilage cavities are observed on both epidermal surfaces of the leaflets in four taxa, the exception being Z. glabra, whose cavities occur only on the abaxial surface. Idioblasts secreting phenolic compounds were detected only in the mesophyll of Z. latifolia and Z. reticulata. The joint occurrence of mucilage epidermis with mucilage cavities seems to be of unifying value for the five taxa analyzed. The position of mucilage cavities and the occurrence of secretory idioblasts in the mesophyll of the leaflets are of diagnostic value, providing a key to enable identification of the taxa studied. This study reveals that the secretory structures provide important information in support of systematic studies of the Leguminosae. In relation to the five taxa of Zornia studied, current results suggest recognition of four species: Z. curvata, Z. glabra, Z. latifolia, and Z. reticulata.     

Internal cavities and buried waters in globular proteins

A fast algorithm that detects internal cavities in proteins and predicts the positions of buried water molecules is described. The cavities are characterized in terms of volume, surface area, polarity, and the presence of bound waters. The algorithm is applied to 12 proteins whose structures are known to high resolution and successfully predicts the locations of over 80% of internal water molecules. Most proteins are found to have a number of internal cavities ranging in volume from 10 to 180 A3. Some of these cavities contain water and some do not, with the probability of containing a buried water increasing with cavity size. However, many large cavities are found to be empty (i.e., they do not contain a crystallographically determined water). For multidomain proteins over half of the total cavity volume is at the interdomain interface. Possible implications for the energetics of cavity formation and for the functional role of internal cavities are discussed.     

Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins

MOTIVATION: There is no consensus in the literature about how the deepest portions of protein structures are packed. Using an improved Voronoi procedure, we calculate reference packing densities for different regions in the protein interior. Furthermore, we want to clarify where cavities are located. RESULTS: Sets of reference packing densities are provided for regions in proteins that differ in their distance to the surface and to internal cavities, supplementing previous data. Packing in the protein interior is tight but generally inhomogeneous. There are about 4.4 cavities per 100 amino acids in protein structures, they occur in all regions, most frequently in a depth of 2.5-3.6 A underneath the Connolly surface. However, the deepest protein regions have a lower mean packing density than circumjacent regions, because more contacts to cavities occur in the core. AVAILABILITY/SUPPLEMENTARY INFORMATION: Calculation software and detailed packing data are available on request.     

Buried waters and internal cavities in monomeric proteins

We have analyzed the buried water molecules and internal cavities in a set of 75 high-resolution, nonhomologous, monomeric protein structures. The number of hydrogen bonds formed between each water molecule and the protein varies from 0 to 4, with 3 being most common. Nearly half of the water molecules are found in pairs or larger clusters. Approximately 90% are shown to be associated with large cavities within the protein, as determined by a novel program, PRO_ACT. The total volume of a protein's large cavities is proportional to its molecular weight and is not dependent on structural class. The largest cavities in proteins are generally elongated rather than globular. There are many more empty cavities than hydrated cavities. The likelihood of a cavity being occupied by a water molecule increases with cavity size and the number of available hydrogen bond partners, with each additional partner typically stabilizing the occupied state by 0.6 kcal/mol.     

Role of flexibility and polarity as determinants of the hydration of internal cavities and pockets in proteins

Molecular dynamics simulations of Staphylococcal nuclease and of 10 variants with internal polar or ionizable groups were performed to investigate systematically the molecular determinants of hydration of internal cavities and pockets in proteins. In contrast to apolar cavities in rigid carbon structures, such as nanotubes or buckeyballs, internal cavities in proteins that are large enough to house a few water molecules will most likely be dehydrated unless they contain a source of polarity. The water content in the protein interior can be modulated by the flexibility of protein elements that interact with water, which can impart positional disorder to water molecules, or bias the pattern of internal hydration that is stabilized. This might explain differences in the patterns of hydration observed in crystal structures obtained at cryogenic and room temperature conditions. The ability of molecular dynamics simulations to determine the most likely sites of water binding in internal pockets and cavities depends on its efficiency in sampling the hydration of internal sites and alternative protein and water conformations. This can be enhanced significantly by performing multiple molecular dynamics simulations as well as simulations started from different initial hydration states.     

Epi- and intracuticular lipids and cuticular transpiration rates of primary leaves of eight barley (Hordeum vulgare) cultivars

The major constituents of the epi- and intracuticular lipids of primary leaves of 8 cultivars of barley ( Hordeum vulgare L.) have been studied together with cuticular transpiration rates. The total amount of analysed cuticular lipids ranged from 9.6 to 13.4 μg cm⁻² and was dominated by the epicuticular fraction, which made up 73–84% of the total. There were variations in the percentages of the analysed lipid classes, alkanes, esters, aldehydes, β-diketones and alcohols, between epi- and intracuticular lipids among individual cultivars, but no clear tendency in these variations, except for the aldehydes, was found. The epicuticular lipids were richer in aldehydes than the intracuticular lipids. The cuticular transpiration rates were poorly correlated with the levels or composition of epi-, intra- or total cuticular lipids. The cuticular transpiration rates were considerably altered as a response to a water stress treatment, but these changes could not be correlated with any changes in amount or composition of the cuticular lipids. From these results it is concluded that some property other than amount or composition of cuticular lipids is the most important in regulation of water diffusion through the cuticle.     

Chemical composition of the epicuticular and intracuticular wax layers on adaxial sides of Rosa canina leaves

BACKGROUND AND AIMS: The waxy cuticle is the first point of contact for many herbivorous and pathogenic organisms on rose plants. Previous studies have reported the average composition of the combined wax extract from both sides of rose leaves. Recently, the compositions of the waxes on the adaxial and abaxial surfaces of Rosa canina leaves were determined separately. In this paper, a first report is made on the compositions of the epicuticular and intracuticular wax layers of Rosa canina leaves. The methods described enable the determination of which compounds are truly available at the surface for plant-organism interactions. METHODS: An adhesive was used to mechanically strip the epicuticular wax from the adaxial leaf surface and the removal was visually confirmed using scanning electron microscopy. After the epicuticular wax had been removed, the intracuticular wax was then isolated using standard chemical extraction. Gas chromatography, flame ionization detection and mass spectrometry were used to identify and quantify compounds in the separated wax mixtures. KEY RESULTS: The epicuticular wax contained higher concentrations of alkanes and alkyl esters but lower concentrations of primary alcohols and alkenols when compared to the intracuticular wax. In addition, the average chain lengths of these compound classes were higher in the epicuticular wax. Secondary alcohols were found only in the epicuticular layer while triterpenoids were restricted mainly to the intracuticular wax. CONCLUSIONS: A gradient exists between the composition of the epi- and intracuticular wax layers of Rosa canina leaves. This gradient may result from polarity differences, in part caused by differences in chain lengths. The outer wax layer accessible to the phyllosphere showed a unique composition of wax compounds. The ecological consequences from such a gradient may now be probed.     

Ligand pathways in myoglobin: a review of Trp cavity mutations

The pathways for ligand entry and exit in myoglobin have now been well established by a wide variety of experimental results, including pico- to nano- to microsecond transient absorbance measurements and time-resolved X-ray crystallographic measurements. Trp insertions have been used to block, one at a time, the three major cavities occupied by photodissociated ligands. In this work, we review the effects of the L29(B10)W mutation, which places a large indole ring in the initial 'docking site' for photodissociated ligands. Then, the effects of blocking the Xe4 site with I28W, V68W, and I107W mutations and the Xe1 cavity with L89W, L104W, and F138W mutations are described. The structures of four of these mutants are shown for the first time (Trp28, Trp68, Trp107, and Trp 138 sperm whale metMb). All available results support a 'side path' mechanism in which ligands move into and out of myoglobin by outward rotation of the HisE7 side chain, but after entry can migrate into internal cavities, including the distal Xe4 and proximal Xe1 binding sites. The distal cavities act like the pocket of a baseball glove, catching the ligand and holding it long enough for the histidine gate to close and facilitate internal coordination with the heme iron atom. The physiological role of the proximal Xe1 site is less clear because changes in the size of this cavity have minimal effects on overall O(2) binding parameters.     

Head anatomy of adult Coniopteryx pygmaea : Effects of miniaturization and the systematic position of Coniopterygidae (Insecta: Neuroptera)

External and internal head structures of adult Coniopteryx pygmaea Enderlein, 1906, one of the smallest known lacewings, are described in detail for the first time. Possible effects of miniaturization and two hypotheses on the phylogenetic position of Coniopterygidae are evaluated and compared with data from literature. Several convergent modifications in C. pygmaea and other miniaturized insect species are outlined, e.g., a relative increase in the size of the brain, simplification of the tracheal system with respect to the number of tracheae, and reduction of the number of ommatidia and diameter of the facets. Further, the ocular ridge is bell-shaped and countersunk into the head capsule. The cuticle is weakly sclerotized and equipped with wax glands which are unique in Neuroptera. The total number of muscles is not affected by miniaturization. The phylogenetic analysis yields Coniopterygidae as sistergroup to the dilarid clade based on one larval character, the shape of the stylets. The enforced basal position of Coniopterygidae is supported by one disputable synapomorphy of the remaining Neuroptera, the presence of paraglossae in adults.     

Cobalt(II) coordination compounds with acetate and 2-aminopyridine ligands: Synthesis, characterization, structures and magnetic properties of two polymorphic forms

The synthesis and characterization of two polymorphic modifications of new cobalt coordination compound with 2-aminopyridine are reported. The modifications were prepared by the reaction of a solution of cobalt acetate tetrahydrate and 2-aminopyridine. The crystal structures of both polymorphic modifications have been determined by single-crystal X-ray diffraction analysis. The structures of both modifications are quite similar. In both of them the Co²⁺ is six coordinated by four O atoms from two bidentate chelate acetate ligands and by two N atoms from two 2-aminopyridine molecules. Acetate and 2-aminopyridine ligands are lying cis about the metal centre. The most important difference is in asymmetry of acetate ligand chelate bonding and in H-bonding network. Compounds exhibit an extensive system of intra and intermolecular hydrogen bonding. Magnetic properties of both modifications were studied between 2 K and 300 K giving the result μ_eff = 4.6 BM for modification I and μ_eff = 4.7 BM for modification II in paramagnetic region.     

The tettigoniid (Orthoptera : Tettigoniidae) ear: Multiple functions and structural diversity

The ears of bushcrickets (Orthoptera : Tettigoniidae) consist of a pair of membranes situated beneath the knee of the foretibia. These membranes, or tympana, are backed by a tracheal system dedicated to sound reception. In most species, a trachea opens through a hole, the auditory spiracle, in the pleuron of the prothorax adjacent to the ventilatory spiracle. Experimental evidence clearly shows that in those species possessing such an opening, sound entering through this route is amplified by the shape of the trachea, or at least is modified through resonances created by its tracheal cavities or tubes. In some species the external surface of the tympanic membrane is surrounded by cuticular folds, which may be formed into small resonating cavities or sound guiding pinnae. In other species the tympana are naked. Sound interacts with the external surface of the tympana, either through these cuticular cavities or directly at the surface of the membrane. As with auditory tracheae, the shape of these cavities may modify sound through resonances. This review examines the role of both external and internal sound-guides in sound reception. It discusses how different species may utilize different sound receiving systems and suggests how, in some cases, both external and internal routes may respond to different frequency bands. The maximum sensitivity of the ear invariably coincides with the male's call carrier frequency. Two Australian species of tettigoniid where the ear is clearly not tuned to the male's call are described. The biology of one undescribed species belonging to the subfamily, Zaprochilinae, where not only is the ear untuned, but there is marked sexual dimorphism in ear structure, is elaborated on. The review concludes with an examination of the routes selection may have taken to arrive at the extreme morphologies present in the Tettigoniidae.     

Intracellular lumen in cultured hepatocytes of rats. Study of an original cytoplasmic infrastructure

A few hours after plating, isolated rat hepatocytes reassociate into clusters and differentiate intercellular cavities bordered by junctional complexes. These structures show a great resemblance to bile canaliculi seen in vivo. Intracellular lumens surrounded by microvilli are observed in the cytoplasm of some cultured hepatocytes. The formation of these structures, which contain an osmiophilic substance, probably results from modifications in the functioning of the secretory apparatus. It can be speculated that these intracellular lumens may contribute to the formation of new canaliculi differentiated between reassociated cells.     

Ultrastructure of the protonephridial system of Polystomoides malayi Rohde and P. renschi Rohde (Monogenea: Polystomatidae)

Rohde K. 1973. Ultrastructure of the protonephridial system of Polystomoides malayi Rohde and P. renschi Rohde (Monogenea : Polystomatidae). International Journal for Parasitology3: 329–333. Polystomoides malayi and P. renschi have three types of protonephridial flames. The first type is a typical flame cell with internal and external ribs connected by a weir membrane without nephrostomes, and with internal and external leptotriches. The second type is a flame cell complex consisting of at least two flames reaching into a common cavity. The third type is a non-terminal (= lateral) flame in the protonephridial ducts, consisting of loosely arranged cilia many of which have lateral tube-like extensions and whose tips have irregularly arranged filaments gradually decreasing in number. The number of cilia in all types of flames varies. The smallest capillaries are strongly convoluted and have a smooth or slightly reticulated surface, the larger ducts have strongly reticulated walls and single cilia may be found in the cavities of the reticulum.     

Composition of the epicuticular and intracuticular wax layers on Kalanchoe daigremontiana (Hamet et Perr. de la Bathie) leaves

Epicuticular and intracuticular waxes from both adaxial and abaxial surfaces of the leaves of Kalanchoe daigremontiana were analyzed. All wax mixtures were found to contain approximately equal amounts of triterpenoids and very long chain fatty acid (VLCFA) derivatives. The triterpenoid fraction consisted of glutinol (8-19% of the total wax) and friedelin (4-9%), together with smaller amounts of glutanol, glutinol acetate, epifriedelanol, germanicol and β-amyrin. The VLCFA derivatives comprised C₂₇-C₃₅ alkanes (19-37% of the total wax), C₃₂-C₃₄ aldehydes (3-7%), C₃₂ and C₃₄ fatty acids (0.2-3%), C₂₆-C₃₆ primary alcohols (4-8%), and C₄₂-C₅₂ alkyl esters (2-9%). The wax layers were found to differ in triterpenoid amounts, with the intracuticular wax containing higher percentages of most triterpenoids than the epicuticular wax. Friedelin, the only triterpenoid ketone present, showed the opposite distribution with higher proportions in the epicuticular wax. VLCFA derivatives also accumulated to higher percentages in the epicuticular than in the intracuticular wax layer. Epicuticular wax crystals were observed on both the adaxial and abaxial leaf surfaces.     

Structural dynamics of myoglobin: effect of internal cavities on ligand migration and binding

Using Fourier transform infrared (FTIR) spectroscopy combined with temperature derivative spectroscopy (TDS) at cryogenic temperatures, we have studied CO binding to the heme and CO migration among cavities in the interior of sperm whale carbonmonoxy myoglobin (MbCO) after photodissociation. Photoproduct intermediates, characterized by CO in different locations, were selectively enhanced by laser illumination at specific temperatures. Measurements were performed on the wild-type protein and a series of mutants (L104W, I107W, I28F, and I28W) in which bulky amino acid side chains were introduced to block passageways between cavities or to fill these sites. Binding of xenon was also employed as an alternative means of filling cavities. In all samples, photolyzed CO ligands were observed to initially bind at primary docking site B in the vicinity of the heme iron, from where they migrate to the secondary docking sites, the Xe4 and/or Xe1 cavities. To examine the relevance of these internal docking sites for physiological ligand binding, we have performed room-temperature flash photolysis on the entire set of proteins in the CO- and O(2)-bound form. Together with the cryospectroscopic results, these data provide a clear picture of the role of the internal sites for ligand escape from and binding to myoglobin.     

Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups

Although internal water molecules are essential for the structure and function of many proteins, the structural and physical factors that govern internal hydration are poorly understood. We have examined the molecular determinants of internal hydration systematically, by solving the crystal structures of variants of staphylococcal nuclease with Gln-66, Asn-66, and Tyr-66 at cryo (100 K) and room (298 K) temperatures, and comparing them with existing cryo and room temperature structures of variants with Glu-66, Asp-66, Lys-66, Glu-92 or Lys-92 obtained under conditions of pH where the internal ionizable groups are in the neutral state. At cryogenic temperatures the polar moieties of all these internal side chains are hydrated except in the cases of Lys-66 and Lys-92. At room temperature the internal water molecules were observed only in variants with Glu-66 and Tyr-66; water molecules in the other variants are probably present but they are disordered and therefore undetectable crystallographically. Each internal water molecule establishes between 3 and 5 hydrogen bonds with the protein or with other internal water molecules. The strength of interactions between internal polar side chains and water molecules seems to decrease from carboxylic acids to amides to amines. Low temperature, low cavity volume, and the presence of oxygen atoms in the cavity increase the positional stability of internal water molecules. This set of structures and the physical insight they contribute into internal hydration will be useful for the development and benchmarking of computational methods for artificial hydration of pockets, cavities, and active sites in proteins.