A preliminary investigation of diversity,abundance, and distributional patterns of chitons in intertidal boulder fields of differing rock type in South Australia

The rock type of hard substrata marine habitats can affect numerous benthic invertebrates, but little is known of the effects on molluscan assemblages, for example, the chitons often found under intertidal boulders. We compared chiton assemblage composition, abundance, species richness, and patterns of frequency distribution in 10 boulder fields containing either hard metamorphic/igneous boulders or soft limestone boulders in two geographical areas in South Australia. Similar species richness occurred in both types of boulder fields, but hard rock boulder fields had greater overall abundances, because of particularly large abundances of some common species. Differences in abundances of common species also resulted in significantly different assemblages occurring between the boulder field types. Some species appeared aggregated among boulders, but this pattern was variable between boulders in differing areas and of differing rock type. In one area, a common species had variable aggregation that caused frequency distributions to differ significantly between boulders of different rock types. These results indicate that rock type needs to be considered when investigating ecological patterns and processes involving specialist molluscs such as under-boulder chitons and to ensure comprehensive marine reserve planning for protecting rare invertebrates in rocky intertidal reefs.     

An ecologically useful classification of mean and near-bed flows in streams and rivers

SUMMARY. 1. Mean motion and near-bed flows in streams and rivers can be described using a classification derived from fairly simple field measurements. Our proposed classification is ecologically useful because it incorporates the combined effects of velocity, depth and substrate roughness to provide a means of quantifying the flow regimes occurring within the microhabitats of stream benthos. 2. Mean motion is characterized by the Reynolds number and the Froude number. Both are easily calculated, and because they are dimensionless they provide a means of comparing flows at different sites. 3. Five categories of near-bed flows (i.e. the flow microenvironments of stream benthos) are recognized. Flow may be hydraulically smooth or hydraulically rough and the latter category is subdivided further into: chaotic flow, wake interference flow, isolated roughness flow and skimming flow. Hydraulically smooth flows occur in sections of a river bed with fine sediments (e.g. sands, muds and clays). over flat sheets of bedrock, or in association with the flat blades of submerged macrophytes. Hydraulically rough flows occur where the substrate elements are larger (e. g. pebbles, cobbles and boulders) and are a function of substrate roughness and the depth of flow relative to the height of the roughness elements. Chaotic flows and wake interference flows predominate in riffles whilst isolated roughness flows and skimming flows are more likely to be a feature of runs. 4. Conventional stream sampling methods (e.g. the Surber and box or cylinder samplers) may collect across several different flow microhabitats. Our classification should enable different flow microenvironments to be recognized and so sampled more appropriately which, in turn, may reduce apparent clumping and the wide confidence intervals of benthic population estimates. Because our classification identifies ‘patches’ within the flow regime associated with the stream bed it enables stream ecologists to generate testable hypotheses regarding the distribution and abundance of benthic species in response to flow. 5. Our classification identifies spatial patterns in the flow regimes associated with the stream bed. Temporal patterns have not been identified: however, predictable changes in spatial patterns will resuh from temporal changes in stream discharge.     

Restoring Intertidal Boulder‐Fields as Habitat for “Specialist” and “Generalist” Animals

Restoration is important in urban areas where habitat destruction is greatest. It incorporates many levels of intervention, with creation of new habitat the most extreme form. Most research on habitat creation has been terrestrial, or in marine habitats dominated by large structuring biota, such as mangroves. Intertidal boulder‐fields in urban areas are vulnerable to disturbances and habitat loss, which adversely affect numerous habitat specialists. This study describes experiments in which quarried stones were used to create new habitat outside natural boulder‐fields as a practical approach to restoring habitat. Colonization by specialist fauna and by common algae and invertebrates was measured for a year after deployment. Despite sessile assemblages on new boulders differing from those on natural boulders, common and rare animals rapidly colonized the new habitat. There was no clear succession, but colonization was variable and patchy at all scales examined, although diversities and abundances of some species in this novel habitat matched those of natural boulders within a few months. Rare and common animals generally colonized the new habitat as adults moving in from surrounding areas. Creating new boulder‐fields using quarried rocks is a successful approach to restoration and conservation of fauna where natural boulder‐fields are threatened.     

Maintaining fish diversity in Thailand: variations in foraging behavior

We examined foraging adaptations and diet among dominant fishes within two species-rich riffle habitats in Thailand headwater rivers during the early and late portions of the dry season. All species exhibited diel temporal variations in feeding activity. Some species fed principally during daylight, while others fed mainly during darkness. Feeding patterns within species were generally spatially and temporally consistent. All seven fishes exploited the same benthic prey, but their foraging activities were related to spatially distinct water velocities. Diets overlapped with Ephemeroptera and Trichoptera the quantitatively most important prey. Ostracods, while not a large contributor to diet biomass, were numerically important in the diet of Homaloptera smithi. Trophic diversification through diel temporal feeding patterns and microhabitat separation by water velocity are major tactics in maintaining high diversity in riffle assemblages in Thai headwater rivers.     

Habitat attributes associated with short‐term settlement of Ozark hellbender (Cryptobranchus alleganiensis bishopi) salamanders following translocation to the wild

1. Organisms associated with lotic systems rank among the most threatened because of global change. Although translocation is being increasingly applied as a conservation strategy, most studies have focused on survival and recruitment of individuals, and few have attempted to identify how habitat attributes influence short‐term settlement of animals during the critical post‐release period. 2. We demonstrate the application of resource selection modelling in an information theoretic framework to identify release‐site characteristics that will increase the likelihood of settlement for a fully aquatic benthic stream salamander, the Ozark hellbender (Cryptobranchus alleganiensis bishopi). We fit discrete choice models using data from 29 radio‐tagged hellbenders that were translocated to two sites in the North Fork of the White River (NFWR), Missouri (U.S.A.). We defined resource availability at two spatial scales (stream reach and home range) and quantified abiotic habitat attributes at 3181 salamander locations and 6329 random available locations collected between May 2008 and August 2009. 3. At both sites and spatial scales, a single model received substantially greater support (0.96–1.00 of total model weight) than all other models, and top‐ranked models were similar in form and predictive ability. At both spatial scales, selection was positively influenced by the presence of cobble‐boulder substratum relative to bedrock and finer substrata. We also noted a negative interactive effect between distance to the nearest substratum particle large enough to provide cover (i.e. at least one axis ≥15 cm in length) and an increase in either a direct or relative (i.e. pool, run, and riffle) measure of water velocity. 4. Collectively, salamanders released in our study selected resources indicative of long‐term benthic microhabitat stability. However, despite strong selection of cobble‐boulder substratum, 8% (282 of 3181) of captive‐reared hellbender locations occurred in bank crevices and root masses. Although several studies have reported the importance of near bed hydraulics in determining occurrence of stream macroinvertebrates, our findings are the first to indicate that spacing among cobble‐boulder substrata may be important for hellbenders. 5. To increase the likelihood of short‐term settlement of captive‐reared hellbenders in the wild, we recommend prioritising release sites where the average distance between cobble‐boulder particles within habitat patches is minimised. In general, average spacing among cobble and boulder substrata should be <1 m in habitat patches where mean benthic water velocity exceeds 0.1 m s^?1, and <0.5 m where water velocity approaches 0.30 m s^?1. Based on home range sizes of captive‐reared Ozark hellbenders, the collective extent of suitable cobble‐boulder habitat patches within release sites should approximate at least 10 m² per salamander released.     

Microhabitat preferences of benthic fauna in a woodland stream

Estimates of numbers, biomass, and diversity of benthic macroinvertebrates were made quarterly over a two-year period to investigate microhabitat preferences. Although biomass of most taxa was significantly different among sampling times, physical factors also appeared to be important in determining abundance of many taxa. Optimum depth, velocity, substrate type, and turbulence were determined for major taxa. Optimum conditions for diversity appeared to be 34 cm depth, 60 cm s^?1 velocity, and rubble and boulder substrate type. Habitat preference functions were derived for several taxa based on significant polynomial regressions of biomass on depth, velocity, substrate, and Froude number (turbulence). The relationship between abundance and physical habitat conditions was tested by using the product of the preference factors (range: 0–1) for depth, velocity and substrate type as a measure of habitat suitability (joint preference factor). There were significant correlations between biomass [transformed by log_e (x + 1)] of 10 benthic species and the joint preference factor. The joint preference factors accounted for from 11 to 61% of the variation of biomass of the 10 benthic species. The intercepts of the relationships between biomass of individual species and the joint preference factor were not significantly different from zero for any species. Therefore, the joint preference factors appear to be valid indicators of biomass. The preference functions have utility in habitat assessment studies, specifically with regard to minimum instream flow determinations.     

Creation and maintenance of habitat downstream from a weir for the greenside darter, Etheostoma blennioides – a rare fish in Canada

The biology, microhabitat use and migratory behaviour of the greenside darter, Etheostoma blennioides, was studied at the Mannheim Weir on the Grand River, Ontario during the summer of 1995 and 1996. Officially listed as vulnerable in Canada, greenside darters reached maturity at age 1 and lived up to 4 years. They were found in riffle habitats that consisted of cobble and loose boulders, with large mats of Cladophora. This type of unembedded substrate is uncommon in the Grand River watershed. However, local abundance of greenside darters immediately downstream from the Mannheim Weir was likely due to high water velocities from weir discharge, freshets and ice scour which help maintain unembedded riffle areas. Trap data indicated that greenside darters temporally partition this habitat with the stonecat, Noturus flavus. Other darter species were not commonly found in areas with greenside darters, whose depth selection and habitat choices were influenced by predators and morphology. Denil fishways at the Mannheim Weir rarely passed greenside darters due to prohibitively high water velocities and exclusion by larger fish. This revised version was published online in August 2006 with corrections to the Cover Date.     

Comparative Microhabitat Use of Ecologically Similar Benthic Fishes

Although benthic insectivorous fishes such as darters and sculpins represent a significant component of riffle communities, few studies have compared the habitat use of these non-related but ecologically similar fishes. The objectives of this study were to examine the habitat use of Etheostoma olmstedi (tessellated darter) compared to Cottus bairdi (mottled sculpin) in Nescopeck Creek and Cottus cognatus (slimy sculpin) in Jack's Creek, Pennsylvania through underwater observation. Etheostoma olmstedi occupied habitats with significantly deeper waters than those available, whereas adult and young of the year Cottus occupied habitats with significantly faster water velocities than those available. Canonical discriminant analysis revealed microhabitat partitioning between E. olmstedi and each Cottus species. Cottus bairdi and C. cognatus occupied significantly shallower habitats with faster water velocities than E. olmstedi. Sculpin species were observed most frequently under substrate whereas E. olmstedi occurred most frequently on the top surface of the substrate. Hurlbert's standardized niche breadth values indicated that C. bairdi and C. cognatus were habitat specialists with regard to water velocity measures, but exhibited generalistic patterns of depth and substrate size use. Etheostoma olmstedi was a habitat specialist with respect to depth, but exhibited generalistic patterns of resource use for substrate size. Differential habitat use by these benthic fishes is consistent with the hypothesis that resource partitioning facilitates species coexistence among stream fishes.     

Manipulating the intensity of near-bed turbulence in rivers: effects on benthic invertebrates

1. Flow conditions were modified over patches of river bed in three rivers in south-western Australia to determine the effects of turbulence on benthic invertebrate communities.
2. Artificial structures to increase downstream turbulence were developed in a laboratory flume. In the field, these increased turbulence intensity by 35% for a 20% reduction in velocity.
3. Patches of gravel were placed in each river and turbulence-generating structures allocated randomly to half of these, creating treatment patches. An acoustic Doppler velocimeter was used to measure flow conditions over both treatment and control patches at several heights above the bed. After 6 weeks, the invertebrate fauna of the gravel patches were sampled to examine the response to modified flow conditions.
4. The treatments increased relative turbulence intensity twofold for a reduction in velocity of between 3 and 5 cm s⁻¹, but turbulence intensity was significantly higher in only one of the three rivers.
5. There were no significant effects of increased relative turbulence intensity on any aspect of the invertebrate assemblage. This may be a result of the fairly small increase in relative turbulence intensity created during the experiment, the spatial scale of the manipulation or the types of stream community studied.     

Microdistribution of benthic invertebrates in a rocky mountain (U.S.A.) stream

A study of the benthic invertebrate community inhabiting a small, foothill trout stream in the Rocky Mountains of Idaho was conducted over a two-year period. Monthly Hess samples and short-term experiments using substratum-filled trays were used to describe the spatial dispersion of the benthos and to examine the response of invertebrate populations to substratum and current. A method was devised for measuring available surface area which involved coating individual stones with latex and measuring the area of the print resulting from inking the impression left on the latex mold.The dispersion of all populations was clumped throughout the year. Alteration of the cross-sectional pattern of current velocity and stream bed composition changed the pattern of distribution but not the extent of clumping. Collections made in areas of depositing and eroding substrata revealed a more diverse fauna in the latter. Most groups of organisms found in the riffle were scarcer in the pools or absent from them. The pool fauna contained no important additions over those found in the riffles.After a year's study of invertebrate populations in an otherwise undisturbed riffle, the substratum was altered and the flow made more uniform; an increase in the abundance of most of the benthic invertebrates followed. No single factor was responsible for the increase, but the change in substratum size and degree of compaction accounted for most of the change. Interpretation of the results was aided by findings from experiments using substratum-filled trays.Two series of stream experiments using the trays were conducted: one to test the relative importance of current and substratum and the other to test the effect of particle size on the distribution of the benthic fauna. In the first series, placement of trays of stones in a pool resulted in an increase in numbers of some but not all of the invertebrates over numbers usually occurring in the pool. Trays filled with stones and placed in a riffle supported fewer animals than found on the adjacent stream bed but more than in the pool. Variations are attributed to differences in current velocity and amounts of imported organic and inorganic debris. Three different relationships of population numbers to current velocity were found for different members of the community (direct, indirect, and parabolic) over the range of 10 to 60 cm/sec. The second series of experiments consisted of two sets of trays filled with stones of medium or large pebbles, respectively. Nine taxa, as well as all of the combined taxa, showed a preference for trays of small stones over the natural stream bed. A few taxa were noticeably more abundant on the small substratum than on the large but most of the fauna showed only slight increases in numbers or remained constant on the two substrata. Only three taxa showed a direct relation of numbers to total surface area presented by the stones.Number and kinds of organisms found in trays filled with a uniform size of substratum did not correspond to those taken in Hess samples from the natural stream bed. This has important implications in terms of currently recommended pollution monitoring techniques. However, it is suggested that if the substratum composition of the trays more nearly matched that of the stream, the correspondence would be much better. The results of the present study also throw considerable doubt on the adequacy of generalizations derived from earlier studies of responses to substratum size and suggest several reasons for reevaluating current ideas regarding the influence of substratum on invertebrate distribution.     

Evaluation of physical fish habitat quality enhancement designs in urban streams using a 2D hydrodynamic model

Creating a habitat for a variety of forms of life, such as riparian plants and various fish, is a necessity for stressed river ecosystems. In this study, the hydraulic characteristics of a fish habitat in an urban channel were analyzed using River2D, which is a two-dimensional (2D) depth-averaged finite element hydrodynamic model, to improve the habitat of two target fish in the Daejeon Stream, Korea. These species are Pseudopungtungia nigra, which is an endangered species in the Daejeon Stream, and Zacco platypus, which is a dominant species. In addition, changes in the weighted usable area (WUA) were compared and reviewed as boulders were placed in the stream. The best method for improving the P. nigra's habitat is proposed. A simulation analysis was performed on urban rivers for fish habitats. As a result, a straight and monotonous urban river flow was found to be an appropriate habitat environment for Z. platypus. The WUA for Z. platypus was about 20 times greater than that for P. nigra. Three different fish habitat enhancement methods were evaluated by calculating the WUA for the target fish in the study channel. By calculating the WUA to create fish habitats, the V-type riffle method was found to increase the usable area of the habitat environment for P. nigra by 360%, and the step stone method and single boulder method did so by 60% and 8%, respectively. For the single boulder method, boulders were placed in the channel bed at 3.5-m intervals, which significantly increased habitat availability. Moreover, centralizing the flow pattern in the channel among several types of boulder placements greatly expanded the habitat for P. nigra. Thus, an appropriate placement interval and boulder location that considers the characteristics of the riverbed and target fish species should be researched and implemented.     

Benthic invertebrates of streams on the Alburz Mountain range near Tehran,Iran

Samples of benthic invertebrates were collected from riffle sites on two river systems in the southern Alburz Mountains in the neighbourhood of Tehran. Iran. Main river channels had a fauna of Oligochaeta, Plecoptera, Ephemeroptera, Trichoptera, Coleoptera, Diptera and Potamonidae and downstream changes in community structure were observed. Tributary streams had few or no benthic invertebrates. The main factors determining fauna appeared to be frequent flooding and high levels of suspended solids caused by quick run-off of rain and melting snow from the bare, eroded and degraded mountain sides.     

Field techniques for the classification of near-bed flow regimes

• 1 The equipment and methods needed for collecting the data required for near-bed flow regime classification are detailed.
• 2 To illustrate appropriate procedures for data analysis, data collected from four cobble bed streams are used to classify near-bed flow regimes both at the measured depth and at estimated bankfull depth.
• 3 Implications of the resulting classifications are discussed from a limnological perspective. It is concluded that while the biological relevance of near-bed flow regimes has not been formally established, the terms ‘pool’, ‘run’, and ‘riffle’ are not always useful for differentiating between habitats in the near-bed zone.

     

Quantifying fluid and bed dynamics for characterizing benthic physical habitat in large rivers

Sturgeon use benthic habitats in and adjacent to main channels where environmental conditions can include bedload sediment transport and high near‐bed flow velocities. Bed velocity measurements obtained with acoustic Doppler instruments provide a means to assess the concentration and velocity of sediment moving near the streambed, and are thus indicative of the bedload sediment transport rate, the near‐bed flow velocity, and the stability of the substrate. Acoustic assessments of benthic conditions in the Missouri River were conducted at scales ranging from the stream reach to individual bedforms. Reach‐scale results show that spatially‐averaged bed velocities in excess of 0.5 m s⁻¹ frequently occur in the navigation channel. At the local scale, bed velocities are highest near bedform crests, and lowest in the troughs. Low‐velocity zones can persist in areas with extremely high mean bed velocities. Use of these low‐velocity zones may allow sturgeon to make use of portions of the channel where the average conditions near the bed are severe. To obtain bed velocity measurements of the highest possible quality, it is necessary to extract bottom‐track and GPS velocity information from the raw ADCP data files on a ping‐by‐ping basis. However, bed velocity measured from a point can also be estimated using a simplified method that is more easily implemented in the context of routine monitoring. The method requires only the transect distance and direction data displayed in standard ADCP data‐logging software. Bed velocity estimates obtained using this method are usually within 5–10% of estimates obtained from ping‐by‐ping processing.     

Benthic and hyporheic macroinvertebrate distribution within the heads and tails of riffles during baseflow conditions

The distribution of lotic fauna is widely acknowledged to be patchy reflecting the interaction between biotic and abiotic factors. In an in situ field study, the distribution of benthic and hyporheic invertebrates in the heads (downwelling) and tails (upwelling) of riffles were examined during stable baseflow conditions. Riffle heads were found to contain a greater proportion of interstitial fine sediment than riffle tails. Significant differences in the composition of benthic communities were associated with the amount of fine sediment. Riffle tail habitats supported a greater abundance and diversity of invertebrates sensitive to fine sediment such as EPT taxa. Shredder feeding taxa were more abundant in riffle heads suggesting greater availability of organic matter. In contrast, no significant differences in the hyporheic community were recorded between riffle heads and tails. We hypothesise that clogging of hyporheic interstices with fine sediments may have resulted in the homogenisation of the invertebrate community by limiting faunal movement into the hyporheic zone at both the riffle heads and tails. The results suggest that vertical hydrological exchange significantly influences the distribution of fine sediment and macroinvertebrate communities at the riffle scale.     

Comparison of benthic macroinvertebrate fauna and substratum composition in riffles and pools in the impounded River Elan and the unregulated River Wye, mid-Wales

SUMMARY. The macro-invertebrate fauna and substrate were studied in a riffle and pool from a regulated (Elan) and an unregulated (Wye) river in summer. There were some differences in the substrate particle size distribution of the two rivers and between the riffle and the pool on the Wye. There was more detritus in pools than in riffles in both rivers and generally more in the Elan than the Wye. Deposits on the bed of the Elan were rich in iron and manganese.
On the Wye. there was a greater density of invertebrates in the riffle than in the pool, but species richness was similar. Most species showed some preferences for either the riffle or the pool. The riffle contained a substantial number of Ephemeroptera, Trichoptera, Plecoptera and Simuliidae (52%) whilst the pool was dominated by chironomids (71%). Compared with the Wye, total invertebrate density and species richness were reduced in the Elan. Some species characteristic of riffles were reduced or absent on the Elan. Invertebrate density on the Elan was similar in the riffle and pool; species richness was greater in the riffle. The distribution and abundance of invertebrates is discussed in relation to such environmental factors as water velocity through the substrate and dissolved oxygen supply in interstitial habitats.     

Potential for mountaintop boulder fields to buffer species against extreme heat stress under climate change

Species may circumvent or minimize some impacts resulting from climate change by utilizing microhabitats that buffer against extreme events (e.g., heat waves). Boulder field habitats are considered to have functioned as important refugia for rainforest fauna during historical climate fluctuations. However, quantitative data on microhabitat buffering potential in these habitats is lacking. We characterized temperature buffering over small distances (i.e., depths) within an exposed and forested boulder field on a tropical mountain. We demonstrate that temperatures are cooler and become more stable at increasing depths within boulder fields. The magnitude of difference is most pronounced in exposed situations where temperatures within boulder fields can be as much as 10°C lower than near surface conditions. Our data provide a first step toward building models that more realistically predict exposure to heat stress for fauna that utilize rocky habitats.     

Patterns of spatial and temporal variation of macrofauna under boulders in a sheltered boulder field

Abstract Spatial and temporal patterns of abundance of animals and plants must be quantified before models to explain distributions can be developed. These patterns also provide essential data for measuring potential effects of environmental disturbances. Studies in many different habitats have shown that most organisms, particularly invertebrates, have highly variable and interactive patterns of abundance, with much variability at the smallest temporal and spatial scales. Intertidal boulder fields in New South Wales, Australia, support a diverse fauna, many species of which are relatively rare. These habitats are commonly found near rock‐platforms and in sheltered estuaries and are subjected to many human disturbances. Although there have been a few studies on the fauna in boulder fields, none has documented variability of the assemblage using multivariate and univariate techniques and most studies have not incorporated different spatial and temporal scales. This study quantifies spatial variation at three scales (metres, tens of metres alongshore and tens of metres upshore) and temporal variation at two scales (3 months and 2 years) of the assemblage of molluscs and echinoderms in a sheltered boulder field subjected to little natural or human disturbance. Multivariate analyses revealed that each site contained a distinct assemblage, mainly due to the relative abundances of a few species. Most species, those generally only found under boulders and common, widespread species, had considerable spatial variability in abundances, with more than 90% measured at the smallest scale, that is metre to metre within a site. Changes in abundances over 3 months or 2 years varied among species and sites in unpredictable ways. These data show that sampling designs to measure impacts on these fauna will need to be complex and must incorporate a number of spatial and temporal scales if they are to be able to detect impact against such a variable background.     

Spatial patterns of abundance and growth of Mytilus edulis on boulders in the Northern Baltic Sea proper

Small scale spatial patterns of abundance, growth and condition of the mussel Mytilus edulis on sub-littoral boulders (approx. 1–2 m high) were investigated at the island of Askö in the northern Baltic proper. The effect of side (exposed/sheltered with respect to wave action and sunlight) of boulder and position (up/down) on boulder was investigated. A large spatial variability in abundance of M. edulis between boulders and between various sites within boulders were found. The highest numbers of mussels were found on the wave exposed side, near the top of boulders. Shell growth was favoured by a sheltered side and a down position. The body condition (meat weight/shell weight) of mussels was, on the other hand, affected only by position, the condition of mussels being better at the up position. Consequently, there seems to be temporal differences in the condition for growth within a spatial position. The body condition of the mussels was best near the top of boulders in the spring, but long-term shell growth was favoured by a sheltered side and a down position. This may reflect changes in the composition and availability of food during the year with phytoplankton as the major food source during the spring bloom and resuspension of benthic production and detritus as relatively more important during the rest of the year.