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1.
The -lactamases of individual strains ofBacteroides fragilis, B. thetaiotaomicron, andB. melaninogenicus were examined to characterize their enzymatic activity and the relation between the periplasmic and cytoplasmic forms of the enzymes. Km and Vmax values indicate that all strains examined were very similar in terms of enzymatic activity with the antibiotics tested. Electrophoretic analysis and treatment with phospholipase D suggest the presence of a cytoplasmic form of the enzyme that is modified upon entry into the periplasmic space.  相似文献   

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Solutions of crystalline beta-lactamase I and beta-lactamase II, prepared by Kuwabara (1970), were examined in the ultracentrifuge and their sedimentation coefficients, diffusion coefficients, molecular weights and heterogeneity determined. Each sample was shown to consist of a major component comprising at least 97% of the material and a minor component of much higher molecular weight. The molecular weights of the major components were 27800 for beta-lactamase I and 35600 for beta-lactamase II. Emphasis is placed on a straightforward practical way of analysing the sedimentation-equilibrium results on mixtures of two macromolecular components rather than on a strict theoretical solution. Appendices describe the theory of systems at both chemical and sedimentation equilibrium and the procedure for calculating the combined distribution of two components.  相似文献   

4.
Summary The protein sequences of 18 class A -lactamases and 2 class C -lactamases were analyzed to produce a rooted phylogenetic tree using the DD peptidase of Streptomyces R61 as an outgroup. This tree supports the penicillin-binding proteins as the most likely candidate for the ancestoral origin of the class A and class C -lactamases, these proteins diverging from a common evolutionary origin close to the DD peptidase. The actinomycetes are clearly shown as the origin of the class A -lactamases found in other non-actinomycete species. The tree also divides the -lactamases from the Streptomyces into two subgroups. One subgroup is closer to the DD peptidase root. The other Streptomyces subgroup shares a common branch point with the rest of the class A -lactamases, showing this subgroup as the origin of the non-actinomycete class A -lactamases. The non-actinomycete class A -lactamase phylogenetic tree suggests a spread of these -lactamases by horizontal transfer from the Streptomyces into the non-actinomycete gram-positive bacteria and thence into the gram-negative bacteria. The phylogenetic tree of the Streptomyces class A -lactamases supports the possibility that horizontal transfer of class A -lactamases occurred within the Streptomyces.  相似文献   

5.

Background

One of the main concerns of the modern medicine is the frightening spread of antimicrobial resistance caused mainly by the misuse of antibiotics. The researchers worldwide are actively involved in the search for new classes of antibiotics, and for the modification of known molecules in order to face this threatening problem. We have applied a computational approach to predict the interactions between a new cephalosporin derivative containing an additional β-lactam ring with different substituents, and several serine β-lactamases representative of the different classes of this family of enzymes.

Results

The results of the simulations, performed by using a covalent docking approach, has shown that this compound, although able to bind the selected β-lactamases, has a different predicted binding score for the two β-lactam rings, suggesting that one of them could be more resistant to the attack of these enzymes and stay available to perform its bactericidal activity.

Conclusions

The detailed analysis of the complexes obtained by these simulations suggests possible hints to modulate the affinity of this compound towards these enzymes, in order to develop new derivatives with improved features to escape to degradation.
  相似文献   

6.
β-Lactamases produced by pathogenic bacteria cleave β-lactam antibiotics and render them ineffective. Understanding the principles that govern the structural stability of β-lactamases requires elucidation of the nature of the interactions that are involved in stabilization. In the present study, we systematically analyze the influence of CH...O interactions on determining the specificity and stability of β-lactamases in relation to environmental preferences. It is interesting to note that all the residues located in the active site of β-lactamases are involved in CH...O interactions. A significant percentage of CH...O interactions have a higher conservation score and short-range interactions are the predominant type of interactions in β-lactamases. These results will be useful in understanding the stability patterns of β-lactamases.  相似文献   

7.
The behavioral effects of β-endorphin, enkephalin analogs, morphine and etorphine were briefly compared. In the tail-flick test in mice and in the wet shake test in rats, β-endorphin and D-Ala2-D-Leu5-enkephalin had equal antinociceptive activity; D-Ala2 -Met-enkephalinamide and D-Leu5-enkephalin were less active. The order of activity of the enkephalin analogs and opiate alkaloids for stimulating locomotor activity in mice paralleled their analgesic activities; β-endorphin, however, had only minimal stimulatory actions. Morphine sulfate, 50 μg injected into the periaqueductal gray, produced hyperactivity but this effect was not observed with etorphine or opioid peptides. By contrast, “wet dog” shakes was observed with the opioid peptides but not with either opiate alkaloid. These heterogenous behavioral responses, which were all antagonized by naloxone, indicate that multiple types of receptors mediate the effects of opiates in the central nervous system.  相似文献   

8.
The introduction of extended-spectrum cephalosporins and β-lactamase inhibitors has driven the evolution of extended-spectrum β-lactamases (ESBLs) that possess the ability to hydrolyze these drugs. The evolved TEM ESBLs from clinical isolates of bacteria often contain substitutions that occur in the active site and alter the catalytic properties of the enzyme to provide an increased hydrolysis of extended-spectrum cephalosporins or an increased resistance to inhibitors. These active-site substitutions often result in a cost in the form of reduced enzyme stability. The evolution of TEM ESBLs is facilitated by mutations that act as global suppressors of protein stability defects in that they allow the enzyme to absorb multiple amino acid changes despite incremental losses in stability associated with the substitutions. The best-studied example is the M182T substitution, which corrects protein stability defects and is commonly found in TEM ESBLs or inhibitor-resistant variants from clinical isolates. In this study, a genetic selection for second-site mutations that could partially restore function to a severely destabilized primary mutant enabled the identification of A184V, T265M, R275Q, and N276D, which are known to occur in TEM ESBLs from clinical isolates, as suppressors of TEM-1 protein stability defects. Further characterization demonstrated that these substitutions increased the thermal stability of TEM-1 and were able to correct the stability defects of two different sets of destabilizing mutations. The acquisition of compensatory global suppressors of stability costs associated with active-site mutations may be a common mechanism for the evolution of novel protein function.  相似文献   

9.
BackgroundThe β-lactam antibiotics represent the most successful drug class for treatment of bacterial infections. Resistance to them, importantly via production of β-lactamases, which collectively are able to hydrolyse all classes of β-lactams, threatens their continued widespread use. Bicyclic boronates show potential as broad spectrum inhibitors of the mechanistically distinct serine- (SBL) and metallo- (MBL) β-lactamase families.MethodsUsing biophysical methods, including crystallographic analysis, we have investigated the binding mode of bicyclic boronates to clinically important β-lactamases. Induction experiments and agar-based MIC screening against MDR-Enterobacteriaceae (n = 132) were used to evaluate induction properties and the in vitro efficacy of a bicyclic boronate in combination with meropenem.ResultsCrystallographic analysis of a bicyclic boronate in complex with AmpC from Pseudomonas aeruginosa reveals it binds to form a tetrahedral boronate species. Microbiological studies on the clinical coverage (in combination with meropenem) and induction of β-lactamases by bicyclic boronates further support the promise of such compounds as broad spectrum β-lactamase inhibitors.ConclusionsTogether with reported studies on the structural basis of their inhibition of class A, B and D β-lactamases, biophysical studies, including crystallographic analysis, support the proposal that bicyclic boronates mimic tetrahedral intermediates common to SBL and MBL catalysis.General significanceBicyclic boronates are a new generation of broad spectrum inhibitors of both SBLs and MBLs.  相似文献   

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Gatti DL 《PloS one》2012,7(1):e30079

Background

The first line of defense by bacteria against β-lactam antibiotics is the expression of β-lactamases, which cleave the amide bond of the β-lactam ring. In the reaction of biapenem inactivation by B2 metallo β-lactamases (MβLs), after the β-lactam ring is opened, the carboxyl group generated by the hydrolytic process and the hydroxyethyl group (common to all carbapenems) rotate around the C5–C6 bond, assuming a new position that allows a proton transfer from the hydroxyethyl group to C2, and a nucleophilic attack on C3 by the oxygen atom of the same side-chain. This process leads to the formation of a bicyclic compound, as originally observed in the X-ray structure of the metallo β-lactamase CphA in complex with product.

Methodology/Principal Findings

QM/MM and metadynamics simulations of the post-hydrolysis steps in solution and in the enzyme reveal that while the rotation of the hydroxyethyl group can occur in solution or in the enzyme active site, formation of the bicyclic compound occurs primarily in solution, after which the final product binds back to the enzyme. The calculations also suggest that the rotation and cyclization steps can occur at a rate comparable to that observed experimentally for the enzymatic inactivation of biapenem only if the hydrolysis reaction leaves the N4 nitrogen of the β-lactam ring unprotonated.

Conclusions/Significance

The calculations support the existence of a common mechanism (in which ionized N4 is the leaving group) for carbapenems hydrolysis in all MβLs, and suggest a possible revision of mechanisms for B2 MβLs in which the cleavage of the β-lactam ring is associated with or immediately followed by protonation of N4. The study also indicates that the bicyclic derivative of biapenem has significant affinity for B2 MβLs, and that it may be possible to obtain clinically effective inhibitors of these enzymes by modification of this lead compound.  相似文献   

14.
The breakdown of antibiotics by β-lactamases may be cooperative, since resistant cells can detoxify their environment and facilitate the growth of susceptible neighbours. However, previous studies of this phenomenon have used artificial bacterial vectors or engineered bacteria to increase the secretion of β-lactamases from cells. Here, we investigated whether a broad-spectrum β-lactamase gene carried by a naturally occurring plasmid (pCT) is cooperative under a range of conditions. In ordinary batch culture on solid media, there was little or no evidence that resistant bacteria could protect susceptible cells from ampicillin, although resistant colonies could locally detoxify this growth medium. However, when susceptible cells were inoculated at high densities, late-appearing phenotypically susceptible bacteria grew in the vicinity of resistant colonies. We infer that persisters, cells that have survived antibiotics by undergoing a period of dormancy, founded these satellite colonies. The number of persister colonies was positively correlated with the density of resistant colonies and increased as antibiotic concentrations decreased. We argue that detoxification can be cooperative under a limited range of conditions: if the toxins are bacteriostatic rather than bacteridical; or if susceptible cells invade communities after resistant bacteria; or if dormancy allows susceptible cells to avoid bactericides. Resistance and tolerance were previously thought to be independent solutions for surviving antibiotics. Here, we show that these are interacting strategies: the presence of bacteria adopting one solution can have substantial effects on the fitness of their neighbours.A cooperative trait is a behaviour by one individual that can benefit another (West et al., 2006). In bacteria, cooperative traits often come in the form of ‘public goods'' released into the environment and available to all. Many virulence factors, including siderophore production, Cry proteins and quorum-regulated traits are cooperative (West and Buckling, 2003; Diggle et al., 2007; Sandoz et al., 2007; Raymond et al., 2012; Zhou et al., 2014). Antibiotic resistance conferred by the enzymatic breakdown of drugs is potentially a cooperative trait as it can detoxify the environment for all cells, and the production of β-lactamases, which cleave and deactivate penicillins, is often cited as a social trait in bacteria (West et al., 2006; Diggle et al., 2007; Brown et al., 2009). Clinical studies have suggested that protective clearance is mediated by the release of β-lactamase enzymes into the environment by producing cells (Brook, 2004), and packaging of β-lactamases into extracellular vesicles has been demonstrated in Pseudomonas aeruginosa (Ciofu et al., 2000). Secretion of enzymes could increase the area of antibiotic clearance, benefiting all cells in a local population.The phenomenon of protective clearance of antibiotics by resistant cells is commonly seen by microbiologists in the presence of ‘satellite'' colonies on transformation plates (Figure 1a). These non-resistant colonies are able to grow on ampicillin plates where resistant colonies are already established. A plausible hypothesis that explains this phenomenon is that resistant transformants clear the antibiotic from their immediate vicinity, creating an antibiotic-free space where susceptible ‘satellite'' colonies can then grow. Previous studies have demonstrated the survival of antibiotic-sensitive Escherichia coli and Salmonella sp. in the presence of resistant strains at high concentrations of antibiotic in vitro (Dugatkin et al., 2005; Clark et al., 2009; Perlin et al., 2009). Cross-species protection of susceptible bacteria by β-lactamase producers has also been seen in vivo (Tacking, 1954; Hackman and Wilkins, 1975; Brook et al., 1983), suggesting that the benefits of β-lactamase enzymes may spread to entire communities.Open in a separate windowFigure 1(a) Satellite colonies around a successful pUC19 transformant on ampicillin agar. Transformation of E. coli DH10B with pUC19 confers resistance to ampicillin and also restores the lac operon, resulting in a blue colony on agar containing X-Gal and IPTG. The successful transformants appeared after ~16 h, white susceptible colonies appeared after >24 h incubation and can be seen growing around the resistant transformants. (b) Antibiotic clearance bioassay. Susceptible colonies grow on ampicillin plates in the presence of resistant colonies (bottom row), but not alone (top row). Resistant colonies were incubated for 48 h on 100 μg ml−1 ampicillin plates before the addition of susceptible colonies. Susceptible strains can grow in the region around the resistant colony, but do not grow outside the central zone or in the absence of a resistant colony (top row). These assays were repeated seven times.Although social evolution theory has done much to alter and improve modern microbial ecology, there is some justification for being cautious about claiming whether specific traits are cooperative or not. A recent controversy has highlighted two important points when studying cooperation: first, we need to demonstrate that behaviours have real fitness benefits for populations, and second that it is desirable to study social evolution with realistic models (Zhang, 2004; Ghoul et al., 2014), something we have endeavoured to do in previous studies (Raymond et al., 2012; Zhou et al., 2014). For example, demonstrating that a microbial product is secreted is not sufficient evidence for cooperation; spatial structure, for example, can prevent secreted products from being publicly available (Raymond and Bonsall, 2013; Zhou et al., 2014), or metabolic products may not be beneficial in all contexts (Zhang and Rainey, 2013; Ghoul et al., 2014). Conversely, secretion may not be necessary for cooperation in the case of detoxification. Active removal of toxins and the ensuing diffusion gradients or lowered concentration of toxin may be all that is required to protect susceptible bacteria (Lenski and Hattingh, 1986).There are some grounds for being sceptical about any claim that β-lactamases are generally cooperative. Previous experiments have used model bacteria with altered sites of expression and potentially increased secretion (Dugatkin et al., 2005; Perlin et al., 2009) and these data might not reflect social interactions in more natural conditions. It is important therefore to consider whether antibiotic resistance genes in the more realistic context of naturally-occurring plasmids can lead to cooperative detoxification of antibiotics. An additional consideration is whether the antibiotic in question is bacteriostatic or bactericidal. When β-lactams are bacteriostatic, that is, if they suspend growth but do not rapidly kill bacteria, then the potential for social interactions may be increased as susceptible bacteria may survive until detoxification by neighbours can reduce concentrations of antibiotics to below inhibitory doses. However, β-lactam antibiotics can be bactericidal, that is, rapidly lethal to bacteria, under a range of conditions (Rolinson et al., 1977; Cozens et al., 1986). Any bactericidal activity is expected to substantially restrict the conditions for coexistence and social exploitation to a narrow range that may depend on initial dosage, as well as the frequency of resistant and susceptible bacteria (Lenski and Hattingh, 1986; Levin, 1988).However, bacteria do have mechanisms that enable them to escape or tolerate the effects of bactericidal antibiotics, one being a ‘persister'' state in which dormant cells can survive exposure to antibiotics (Lewis, 2010). Persister cells were identified early in the clinical life of penicillin (Bigger, 1944), but a recent resurgence in interest has been fuelled by a wider appreciation of their clinical importance, especially in the light of the current antibiotic resistance crisis (Lewis, 2007). Persister cells are natural variants present at low frequency in the bacterial population (Lewis, 2010). The phenotypic switch between persistence and active growth appears to occur at random, although it is affected by growth phase (Balaban, 2004). The presence of persisters in biofilms is thought to contribute to increased antimicrobial tolerance and the maintenance of chronic infections (Brooun et al., 2000; Lewis, 2001; Harrison et al., 2005). Since satellite colonies on ampicillin plates are characterized by a delayed growth pattern, appearing after 24–72 h of cultures, and emerge as rare individuals from a high density of bacteria, they have many of the characteristics of cells that have passed through a persister state. We therefore hypothesised that phenotypically susceptible bacteria might only rarely be able to benefit from detoxification by others while persisters may be more likely to exploit the β-lactamases of their neighbours.The primary aim of this work was to examine cooperative β-lactam resistance using a naturally occurring resistance plasmid, pCT, (Cottell et al., 2011) and to investigate both the environmental and demographic conditions under which cooperative resistance occurs. In line with social evolution theory, we expected that ‘cheating'' or exploitation of detoxification by susceptible cells should increase with the density and frequency of resistant bacteria (Ross-Gillespie et al., 2007, 2009; Raymond et al., 2012). To this end, competition experiments were conducted between the pCT-carrying strain and an otherwise isogenic plasmid-free E. coli under a variety of conditions. The results of these experiments showed little or no cooperative resistance, in other words phenotypically susceptible bacteria did not tend to have an increased ability to survive antibiotics in the presence of resistant cells. We then tested whether dormancy has a role in the ability of E. coli to exploit the β-lactamase activity of neighbouring cells.  相似文献   

15.
The effects of substrate binding on class A β-lactamase dynamics were studied using molecular dynamics simulations of two model enzymes; 40 100-ns trajectories of the free and substrate-bound forms of TEM-1 (with benzylpenicillin) and PSE-4 (with carbenicillin) were recorded (totaling 4.0 μs). Substrates were parameterized with the CHARMM General Force Field. In both enzymes, the Ω loop exhibits a marked flexibility increase upon substrate binding, supporting the hypothesis of substrate gating. However, specific interactions that are formed or broken in the Ω loop upon binding differ between the two enzymes: dynamics are conserved, but not specific interactions. Substrate binding also has a global structuring effect on TEM-1, but not on PSE-4. Changes in TEM-1’s normal modes show long-range effects of substrate binding on enzyme dynamics. Hydrogen bonds observed in the active site are mostly preserved upon substrate binding, and new, transient interactions are also formed. Agreement between NMR relaxation parameters and our theoretical results highlights the dynamic duality of class A β-lactamases: enzymes that are highly structured on the ps-ns timescale, with important flexibility on the μs-ms timescale in regions such as the Ω loop.  相似文献   

16.
The newly discovered fungal species Aspergillus saccharolyticus was found to produce a culture broth rich in β-glucosidase activity. In this present work, the main β-glucosidase of A.?saccharolyticus responsible for the efficient hydrolytic activity was identified, isolated, and characterized. Ion exchange chromatography was used to fractionate the culture broth, yielding fractions with high β-glucosidase activity and only 1 visible band on an SDS-PAGE gel. Mass spectrometry analysis of this band gave peptide matches to β-glucosidases from aspergilli. Through a polymerase chain reaction approach using degenerate primers and genome walking, a 2919 bp sequence encoding the 860 amino acid BGL1 polypeptide was determined. BGL1 of A.?saccharolyticus has 91% and 82% identity with BGL1 from Aspergillus aculeatus and BGL1 from Aspergillus niger , respectively, both belonging to Glycoside Hydrolase family 3. Homology modeling studies suggested β-glucosidase activity with preserved retaining mechanism and a wider catalytic pocket compared with other β-glucosidases. The bgl1 gene was heterologously expressed in Trichoderma reesei QM6a, purified, and characterized by enzyme kinetics studies. The enzyme can hydrolyze cellobiose, p-nitrophenyl-β-d-glucoside, and cellodextrins. The enzyme showed good thermostability, was stable at 50?°C, and at 60?°C it had a half-life of approximately 6?h.  相似文献   

17.
The activity of class D β-lactamases is dependent on Lys70 carboxylation in the active site. Structural, kinetic and affinity studies show that this post-translational modification can be affected by the presence of a poor substrate such as moxalactam but also by the V117T substitution. Val117 is a strictly conserved hydrophobic residue located in the active site. In addition, inhibition of class D β-lactamases by chloride ions is due to a competition between the side chain carboxylate of the modified Lys70 and chloride ions. Determination of the individual kinetic constants shows that the deacylation of the acyl-enzyme is the rate-limiting step for the wild-type OXA-10 β-lactamase.  相似文献   

18.
β-Casein is one of the major components of the milk micelles of most mammals and has been shown to exhibit in vitro chaperone-like activity. Glycerol is a chemical chaperone belonging to the polyol family, which increases protein stability and inhibits protein aggregation. These prompted us to compare the chaperone-like activity of β-casein and glycerol. In this study, the effect of β-casein and glycerol on folding of the target proteins (ovotransferrin, insulin and α-lactalbumin) in the presence of dextran, as a macromolecular crowding agent, is examined using visible absorption spectroscopy, intrinsic fluorescence spectroscopy, 1-anilino-8-naphthalene sulfonic acid fluorescence binding and near CD spectroscopy. In the presence of dextran, the rate and extent of aggregation of target proteins was enhanced and β-casein was less effective in preventing the aggregation and precipitation of target proteins. These data support the hypothesis that β-casein interacts more effectively with slowly aggregating rather than rapidly aggregating target proteins. It is proposed that dextran-induced changes to protein conformation and the rate of intermolecular association are in a kinetic competition with the chaperoning action of β-casein; however our results demonstrated the higher activity of glycerol, as a chemical chaperone, than β-casein on the folding of target proteins, especially in the presence of dextran. This is likely due to the stabilizing effect of glycerol on protein structure and environment. The implications for the in vivo functions of β-casein and glycerol, based on their exhibiting such in vitro chaperone-like activities, are discussed.  相似文献   

19.
Promoters of the genesG3P, ICL1, POT1, POX1, POX2 andPOX5 of the yeastY. lipolytica were studied in respect to their regulations and activities during growth on different carbon sources. The aim of this study was to select suitable promoters for high expression of heterologous genes in this yeast. For this purpose the promoters were fused with the reporter genelacZ ofE. coli and integrated as single copies into the genome ofY. lipolytica strain PO1d. The measurement of expressed activities of β-galactosidase revealed thatpICL1, pPOX2 andpPOT1 are the strongest regulable promoters available forY. lipolytica, at present.pPOX2 andpPOT4 were highly induced during growth on oleic acid and were completely repressed by glucose and glycerol.pICL1 was strongly inducible by ethanol besides alkanes and fatty acids, however, not completely repressible by glucose or glycerol. Ricinoleic acid methyl ester appeared as a very strong inducer forpPOT1 andpPOX2, in spite of that it inhibited growth ofY. lipolytica transformants.  相似文献   

20.
The β-lactamase from Klebsiella pneumoniae E70 behaved in a similar fashion to the TEM-2 plasmid mediated enzyme on reaction with clavulanic acid. Both enzymes produced two types of enzyme–clavulanate complex, a transiently stable species (t½=4min at pH7.3 and 37°C) and irreversibly inhibited enzyme. In the initial rapid reaction (2.5min) the enzymes partitioned between the transient and irreversible complexes in the ratios 3:1 for TEM-2 β-lactamase and 1:1 for Klebsiella β-lactamase. Biphasic inactivation was observed for both enzymes and the slower second phase was rate limited by the decay of the transiently stable complex. This decay released free enzyme for further reaction with fresh clavulanic acid, the products again partitioning between transiently stable and irreversibly inhibited enzyme. This cycle continued until all the enzyme had been irreversibly inhibited. A 115 molar excess of inhibitor was required to achieve complete inactivation of TEM-2 β-lactamase. Hydrolysis of clavulanic acid with product release appeared to occur with the inhibition reaction, which explained this degree of clavulanic acid turnover. The stoichiometry of the interaction with Klebsiella β-lactamase was not examined. The penicillinase from Proteus mirabilis C889 was rapidly inhibited by low concentrations of clavulanic acid. The major product was a moderately stable complex (t½=40min at pH7.3 and 37°C); the proportion of the enzyme that was irreversibly inactivated was small. The cephalosporinase from Enterobacter cloacae P99 had low affinity for the inhibitor and only reacted with high concentrations of clavulanic acid (k=4.0m−1·s−1) to produce a relatively stable complex (t½=180min at pH7.3 and 37°C). No irreversible inactivation of this enzyme was detected. The rates of decay of the clavulanate–enzyme complexes produced in reactions with Proteus and Enterobacter enzymes were markedly increased at acid pH.  相似文献   

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