A microbial sampler for freshwaters

A freshwater sampler using five sterile evacuated glass tubes is described. Water enters when a rubber stopper is mechanically removed from the end of a sterile hypodermic needle inserted into each tube. Plate counts of bacterial colonies were compared with those obtained with other samplers.     

A simple water and plankton sampler

SUMMARY. A lightweight, free-flushing water and plankton sampler constructed of readily available, inexpensive material is described. Easily interchangeable tubes of varying volumes allow sampling flexibility. The sampler is activated by a messenger and is shut by two plastic funnels. For analyses in highly stratified waters, the sampler can be adjusted into the horizontal position. Several samplers may be tripped in series. The sampler has proved a versatile and reliable instrument in ecological studies.
The tripping mechanism may also be used to release reversing thermometers and closing nets.     

A new sampler for extracting undisturbed surface peat cores for growth pot experiments

The sampler extracts uncompressed cores of 13·3 cm in diameter, up to 70 cm long, from the surface layers of peat. It has two close-fitting concentric cylindrical tubes, the outer one acting as a cutter and the inner one as a collector. As the outer tube is introduced by rotation into the peat, the cut core is collected in the inner tube which is maintained in a fixed position during the rotation phase and then pushed down stepwise. This limits friction between the peat core and the wall of the corer and prevents compression or distortion of the peat. These problems are also reduced by means of three skew cutters allowing the peat to be supported during the slicing action. Air can penetrate between the tubes to the lower end of the core, suppressing any suction effect during withdrawal. The sampler has been tested and has worked satisfactorily in many different peat types.     

Evacuated blood-collection tubes--the backflow hazard.

Five cases of nosocomial infection caused by Serratia marcescens were traced to backflow of blood from nonsterile evacuated blood-collection tubes. The mechanism of backflow was investigated theoretically and the conditions were determined under which backflow can occur. The theory was confirmed by experiments conducted on a simulated venous system and by measurements of the venous pressure in the brachial vein of a patient during application and removal of a tourniquet. Various possible solutions to the backflow hazard include strict adherence to correct venipuncture technique, sterilization of all blood-collection tubes, improvement of the vacuum in the tubes and incorporation of a check valve into the system.     

A method of collecting water samples from immediately below an ice cover

A plexiglas box with cellular neoprene gaskets in two opposite faces which can be frozen in situ in a developing ice cover on a lake is described along with a water sampling system using evacuated glass tubes (Vacutainers) and blood collecting needles. This system allows collecting of water samples from directly beneath the ice without disturbing the ice cover. The box may be removed in an ice block at the end of the sampling period.     

Artificial Neural Networks-Based Software for Measuring Heat Collection Rate and Heat Loss Coefficient of Water-in-Glass Evacuated Tube Solar Water Heaters

Measurements of heat collection rate and heat loss coefficient are crucial for the evaluation of in service water-in-glass evacuated tube solar water heaters. However, conventional measurement requires expensive detection devices and undergoes a series of complicated procedures. To simplify the measurement and reduce the cost, software based on artificial neural networks for measuring heat collection rate and heat loss coefficient of water-in-glass evacuated tube solar water heaters was developed. Using multilayer feed-forward neural networks with back-propagation algorithm, we developed and tested our program on the basis of 915measuredsamples of water-in-glass evacuated tube solar water heaters. This artificial neural networks-based software program automatically obtained accurate heat collection rateand heat loss coefficient using simply "portable test instruments" acquired parameters, including tube length, number of tubes, tube center distance, heat water mass in tank, collector area, angle between tubes and ground and final temperature. Our results show that this software (on both personal computer and Android platforms) is efficient and convenient to predict the heat collection rate and heat loss coefficient due to it slow root mean square errors in prediction. The software now can be downloaded from http://t.cn/RLPKF08.     

Semiautomated Method for Microbiological Vitamin Assays

A semiautomated method for microbiological vitamin assays is described, which includes separate automated systems for the preparation of the cultures and for the measurement of turbidity. In the dilution and dosage unit based on the continuous-flow principle, vitamin samples were diluted to two different dose levels at a rate of 40 per hr, mixed with the inoculated test broth, and dispensed into culture tubes. After incubation, racks with culture tubes were placed on the sampler of an automatic turbidimeter. This unit, based on the discrete-sample system, measured the turbidity and printed the extinction values at a rate of 300 per hr. Calculations were computerized and the results, including statistical data, are presented in an easily readable form. The automated method is in routine use for the assays of thiamine, riboflavine, pyridoxine, cyanocobalamin, calcium pantothenate, nicotinic acid, pantothenol, and folic acid. Identical vitamin solutions assayed on different days gave variation coefficients for the various vitamin assays of less than 10%.     

Immunization of Aged Pigs with Attenuated Pseudorabies Virus Vaccine Combined with CpG Oligodeoxynucleotide Restores Defective Th1 Immune Responses

Background and Aims

Attempts to immunize aged subjects often result in the failure to elicit a protective immune response. Murine model studies have shown that oligonucleotides containing CpG motifs (CpG ODN) can stimulate immune system in aged mice as effectively as in young mice. Since many physiological and pathophysiological data of pigs can be transferred to humans, research in pigs is important to confirm murine data. Here we investigated whether immunization of aged pig model with attenuated pseudorabies virus vaccine (PRV vaccine) formulated with CpG ODN could promote a successful development of immune responses that were comparable to those induced in young pigs in a similar manner.

Methodology

Young and aged pigs were immunized IM with PRV vaccine alone, or in combination with CpG ODN respectively. At days 3, 7, 14 post immunization sera were assayed by ELISA for IgG titres, at day 7 for IgG1 and IgG2 subtypes titres. All blood samples collected in evacuated test tubes with K-EDTA at day 7 were analyzed for flow cytometer assay. Blood samples at day 7 collected in evacuated test tubes with heparin were analysed for antigen-specific cytokines production and peripheral blood mononuclear cells (PBMCs) proliferative responses.

Results

CpG ODN could enhance Th1 responses (PRV-specific IgG2/IgG1 ratio, proliferative responses, Th1 cytokines production) when used as an adjuvant for the vaccination of aged pigs, which were correlated with enhanced CD4+ T cells percentage, decreased CD4+CD8+CD45RO+ T cells percentage and improved PRV-specific CD4+ T cells activation.

Conclusions

Our results demonstrate a utility for CpG ODN, as a safe vaccine adjuvant for promoting effective systemic immune responses in aged pig model. This agent could have important clinical uses in overcoming some of age-associated depressions in immune function that occur in response to vaccination.     

A sampling device that quantitatively collects benthos in flowing or standing waters

A hand-operated suction sampler designed to sample benthos from fine to coarse rocky substrata in standing and flowing waters is described. The suction sampler collected a similar number of taxa but more individuals from a flowing riffle than a modified Surber sampler. A critique of the suction sampler is presented, illustrating the suitability of the sampler for quantitative studies of streams with highly variable discharge or intermittency.     

An efficient and quantitative aquatic benthos sampler for use in diverse habitats with variable flow regimes

A suction sampler designed to minimize sampling error, and quantitatively collect benthic macroinvertebrates from coarse substrata under various flow regimes is described. This sampler uses a 12 V bilge pump (capacity 4400 1 h^–1) to suck animals into a collecting net from substrata disturbed by a single operator. Macroinvertebrates were collected more rapidly by this sampler than by a Surber sampler or a Boulton suction sampler. Sources of sampling error are discussed for all three samplers. The electric pump sampler described here is suitable for sampling habitats where depth and velocity vary spatially and with time.     

A pneumatically-operated water sampler for close intervals of depth

A pneumatically-operated sampler for collecting water samples at close intervals of depth in lakes is described. The sampler uses plastic disposable syringes and may be operated at various depths and at the mud-water interface. Examples of results obtained with the sampler are given.     

A quantitative sampler for collecting invertebrates associated with deep submerged vegetation

Only few of the numerous samplers for collecting invertebrate fauna associated with vegetation permit sampling at depths of more than approximately 0.5 m. This paper describes a sampler allowing collection of epifauna from submerged plants at a depth of up to approximately 2 m, growing in varied densities. The sampler is composed of two panels made of duralumin, connected on one side by means of piano-hinges. One of the panels has an opening covered with mesh, and the other is equipped with a cone-shaped net and detachable sample concentrator at its end. The sampler is coupled with a manipulator with a several meter extension for lowering the sampler under water, as well as for its opening, and closing. The initial assessment of the sampler efficiency, verified in beds of Potamogeton perfoliatus, provided similar results as two other, older and commonly used samplers. In comparison with the older devices, the sampler has the advantage of permitting collecting samples from greater depths. It also enables studying both the vertical and horizontal distribution of invertebrates within a plant patch.     

A new quantitative air-lift sampler for collecting macroinvertebrates on stony bottoms in deep rivers

SUMMARY. 1. As three previous comparative studies of deep-water samplers for benthic macroinvertebrates in rivers highlighted the need for a quantitative sampler for use on stony substrata, a new air-lift sampler was developed. It can be operated from a small boat by two people, weighs 13.5–20.0 kg, depending on the length of riser used, and extends the maximum range of substrata that may be sampled quantitatively from 16–32 mm to 128—256 mm. The sampling area is isolated by forcing a collecting cylinder into the substratum, and rapid evacuation of the contents is assisted by a vibrator.
2. All the major specifications of the sampler were determined experimentally in a large tank using three sizes of substrata and plastic pellets to represent invertebrates. The sampler performed accurately to a depth of at least 8 cm on substrata ranging from gravel (2–4 mm) to large stones (32–36 mm long).
3. The performance of the sampler was compared with that of a Ponar grab and Pearson el at. air-lift sampler at two sites on a large river and also with a Naturalist's dredge and a diver-operated Hess-Waters sampler at one of the sites where there were large stones up to 280 mm long. In terms of both mean taxa per sample and mean numbers m⁻², samples taken using the new air-lift sampler provided estimates comparable to or belter than those obtained with the other samplers.     

A QUANTITATIVE SAMPLER FOR SUBMERGED AQUATIC MACROPHYTES

SUMMARY

A simple rotary sampler, capable of quantitatively harvesting submerged aquatic macrophytes is described. The sampler can be operated from a boat and consists of a central rod with a specially designed cutting blade at the base, and collecting hooks to catch the cut material. The values obtained with this sampler were not significantly different (at the 95% level of probabality) from those obtained by manual cutting underwater. The rotary sampler has great advantages in terms of time, ease of positioning, and effort over hand cutting.     

A portable, low-cost, multipurpose, surface-subsurface plankton sampler

This note describes a portable, low-cost, pump-based, multi-purpose,surface–subsurface, phytoplankton and zooplankton sampler.It is self-powered by a small 12 V DC battery, and is portableand ideal for use from a small boat in a river, estuary, orsea. The sampler is equipped with a very sensitive microprocessor-controlledflow sensor for precise determination of the volume of waterprocessed by the sampler. A study was carried out to evaluatethe performance of this sampler in comparison to the conventionaltowed plankton net. The results of this study suggest that thispump-based sampler is as efficient in collecting plankton asusing conventional plankton nets, with little damage to theorganisms.     

Comparison of three zooplankton samplers: a taxon-specific assessment

We compared densities of zooplankton captured by three commonzooplankton samplers during 24 h. A tube sampler generally yieldedzooplankton densities equal to or greater than those from avertical net tow or a Schindler-Patalas trap. Exceptions includedherbivorous rotifers and Diaphanosoma. Because rotifer densityusually was greatest in the deepest stratum sampled (i.e. nearthe bottom of the tube), water loss with lifting probably accountedfor reduced rotifer capture. Why the tube and the Schindler-Patalastrap were less efficient than the net for Diaphanosoma remainsunclear. Because tubes sample the entire water column, providingzooplankton densities comparable with traditional gear, theyare a time-saving alternative for zooplankton sampling in shallowlakes and weedy littoral zones. ²The Unit is sponsored jointly by The United States Fish andWildlife Service, Ohio Department of Natural Resources, TheOhio State University and the Wildlife Management Institute.     

An inexpensive device for sampling large volumes of lake water from discrete depths

SUMMARY 1. A sampler was developed that displaces surface water which is replaced with water from a sampling tube at a set depth.
2. The displacement sampler is inexpensive, easy to build, and is capable of collecting water at 7.5 I min⁻¹.
3. Phytoplankton photosynthesis was higher in water from the displacement sampler than in water collected with a Van-Dorn bottle. Subsequent experiments indicated this was due to inhibition caused by the Van-Dorn bottle.     

Efficient Markov chain Monte Carlo implementation of Bayesian analysis of additive and dominance genetic variances in noninbred pedigrees

Accurate and fast computation of quantitative genetic variance parameters is of great importance in both natural and breeding populations. For experimental designs with complex relationship structures it can be important to include both additive and dominance variance components in the statistical model. In this study, we introduce a Bayesian Gibbs sampling approach for estimation of additive and dominance genetic variances in the traditional infinitesimal model. The method can handle general pedigrees without inbreeding. To optimize between computational time and good mixing of the Markov chain Monte Carlo (MCMC) chains, we used a hybrid Gibbs sampler that combines a single site and a blocked Gibbs sampler. The speed of the hybrid sampler and the mixing of the single-site sampler were further improved by the use of pretransformed variables. Two traits (height and trunk diameter) from a previously published diallel progeny test of Scots pine (Pinus sylvestris L.) and two large simulated data sets with different levels of dominance variance were analyzed. We also performed Bayesian model comparison on the basis of the posterior predictive loss approach. Results showed that models with both additive and dominance components had the best fit for both height and diameter and for the simulated data with high dominance. For the simulated data with low dominance, we needed an informative prior to avoid the dominance variance component becoming overestimated. The narrow-sense heritability estimates in the Scots pine data were lower compared to the earlier results, which is not surprising because the level of dominance variance was rather high, especially for diameter. In general, the hybrid sampler was considerably faster than the blocked sampler and displayed better mixing properties than the single-site sampler.     

The Sea Core Sampler: a simple water sampler that allows direct observations of undisturbed plankton

A simple water sampler that brings undisturbed water samplesto the deck-laboratory and that allows video recording of planktonand small-scale plankton phenomena directly in the sampler isdescribed. Using the sampler, it is possible to follow individualplankton organisms and marine snow aggregates for longer periodsof time in an environment where the original three-dimensionalorganization of particles and chemical gradients have been retained.The sampler has been used to film sinking marine snow, the microbiallife on a snow flake, and the behaviour of delicate zooplanktersthat are otherwise difficult to collect live. Video clips demonstratingthe utility of the sampler are available online.     

A moorable,automated plankton sampler

A moorable, automated plankton sampler is described, designed to obtain series of plankton samples over extended time periods in the absence of a surface vessel. The sampler consists of one or more net-containing boxes, a unit for generating as well as measuring water flow through the net boxes, a programmeable control unit, and a frame. Each net box contains several nets on a vinyl strip, used to move the nets from the storage chamber into the fishing position and then into the preservative chamber. Preservation of samples is in a formalin-brine mixture.Net boxes can be added and the number of nets per box changed; the prototype is described with 1 net box with 10 nets. Volume of water to be filtered, time between sample collections, number of net boxes and the number of nets in each box is programmed into the control unit before sampler deployment. Collections made with the sampler are compared with those made with a SCOR net and a pump.