Competition induces allelopathy but suppresses growth and anti-herbivore defence in a chemically rich seaweed

Many seaweeds and terrestrial plants induce chemical defences in response to herbivory, but whether they induce chemical defences against competitors (allelopathy) remains poorly understood. We evaluated whether two tropical seaweeds induce allelopathy in response to competition with a reef-building coral. We also assessed the effects of competition on seaweed growth and seaweed chemical defence against herbivores. Following 8 days of competition with the coral Porites cylindrica, the chemically rich seaweed Galaxaura filamentosa induced increased allelochemicals and became nearly twice as damaging to the coral. However, it also experienced significantly reduced growth and increased palatability to herbivores (because of reduced chemical defences). Under the same conditions, the seaweed Sargassum polycystum did not induce allelopathy and did not experience a change in growth or palatability. This is the first demonstration of induced allelopathy in a seaweed, or of competitors reducing seaweed chemical defences against herbivores. Our results suggest that the chemical ecology of coral–seaweed–herbivore interactions can be complex and nuanced, highlighting the need to incorporate greater ecological complexity into the study of chemical defence.     

The effect of gravity on coral morphology

Coral morphological variability reflects either genetic differences or environmentally induced phenotypic plasticity. We present two coral species that sense gravity and accordingly alter their morphology, as characterized by their slenderness (height to diameter) ratio (SR). We experimentally altered the direction (and intensity) of the gravitational resultant force acting along or perpendicular to the main body axis of coral polyps. We also manipulated light direction, in order to uncouple gravity and light effects on coral development. In the experiments, vertically growing polyps had significantly higher SR than their horizontal siblings even when grown in a centrifuge (experiencing different resultant gravitational forces in proximal and distal positions). Lowest SR was in horizontal side-illuminated polyps, and highest in vertical top-illuminated polyps. Adult colonies in situ showed the same pattern. Gravitational intensity also affected polyp growth form. However, polyp volume, dry skeleton weight and density in the various centrifuge positions, and in aquaria experiments, did not differ significantly. This reflects the coral's ability to sense altered gravity direction and intensity, and to react by changing the development pattern of their body morphology, but not the amount of skeleton deposited.     

Regulation of Bacterial Communities Through Antimicrobial Activity by the Coral Holobiont

Interactions between corals and associated bacteria and amongst these bacterial groups are likely to play a key role in coral health. However, the complexity of these interactions is poorly understood. We investigated the functional role of specific coral-associated bacteria in maintaining microbial communities on the coral Acropora millepora (Ehrenberg 1834) and the ability of coral mucus to support or inhibit bacterial growth. Culture-independent techniques were used to assess bacterial community structures whilst bacterial culture was employed to assess intra- and inter-specific antimicrobial activities of bacteria. Members of Pseudoalteromonas and ribotypes closely related to Vibrio coralliilyticus displayed potent antimicrobial activity against a range of other cultured isolates and grew readily on detached coral mucus. Although such bacterial ribotypes would be expected to have a competitive advantage, they were rare or absent on intact and healthy coral colonies growing in situ (analysed using denaturing gradient gel electrophoresis and 16S rRNA gene sequencing). The most abundant bacterial ribotypes found on healthy corals were Gammaproteobacteria, previously defined as type A coral associates. Our results indicate that this group of bacteria and specific members of the Alphaproteobacteria described here as ‘type B associates’ may be important functional groups for coral health. We suggest that bacterial communities on coral are kept in check by a combination of host-derived and microbial interactions and that the type A associates in particular may play a key role in maintaining stability of microbial communities on healthy coral colonies.     

Optical method for long-term and large-scale monitoring of spatial biofilm development

A method was developed that allows biofilm monitoring on the square centimeter scale over extended periods of time. The method is based on image acquisition using a desktop scanner and subsequent image analysis. It was shown that results from grey level analysis are highly correlated with physical properties of the biofilm like average biomass and biofilm thickness. The scanner method was applied to monitor overall biofilm growth, detachment, and surface roughness during two 3 and 4 week long experiments. Two significantly different growth dynamics during the biofilm development could be identified, depending on the biofilm history. Surface roughness on transects in flow direction was always higher than on transects perpendicular to the flow, reflecting the anisotropic characteristics of biofilms growing in a flow field.     

Host-finding behaviour and navigation capabilities of symbiotic zooxanthellae

Past studies have shown that the initiation of symbiosis between the Red-Sea soft coral Heteroxenia fuscescens and its symbiotic dinoflagellates occurs due to the chemical attraction of the motile algal cells to substances emanating from the coral polyps. However, the resulting swimming patterns of zooxanthellae have not been previously studied. This work examined algal swimming behaviour, host location and navigation capabilities under four conditions: (1) still water, (2) in still water with waterborne host attractants, (3) in flowing water, and (4) in flow with host attractants. Algae were capable of actively and effectively locating their host in still water as well as in flow. When in water containing host attractants, swimming became slower, motion patterns straighter and the direction of motion was mainly towards the host—even if this meant advancing upstream against flow velocities of up to 0.5 mm s⁻¹. Coral-algae encounter probability decreased the further downstream of the host algae were located, probably due to diffusion of the chemical signal. The results show how the chemoreceptive zooxanthellae modify their swimming pattern, direction, velocity, circuity and turning rate to accommodate efficient navigation in changing environmental conditions.     

Effects of water flow on growth and energetics of the scleractinian coral<Emphasis Type="Italic"> Agaricia tenuifolia</Emphasis> in Belize

The branching scleractinian coral Agaricia tenuifolia is abundant on reefs in Belize, over an exceptionally broad range of depth, flow regime, and irradiance. Photosynthesis and respiration of coral branches were measured over a range of irradiance and unidirectional flow speeds (1–10 cm s^–1) using a small-volume respirometry chamber designed for flat coral branches. Respiration rate increased significantly with flow speed; however, there was no significant effect of flow on either α or P_max, indicating that this coral could thus carry out maximum photosynthesis even at very low flow. This result contrasts with published results for other coral species that experience a significant increase in net photosynthesis with flow speed. Growth rates of A. tenuifolia were measured using branch fragments in a variety of reef habitats, over a range of water flow speeds. Growth rates were comparable over most habitat types, across a depth range of 1–15 m. Compared to 1 m, flow and irradiance at 15 m decreased to less than 20% and less than 50%, respectively. Reduced growth was observed only at 24-m depth, and in low-flow microhabitats (concavities) at 15 m. Transplants to 1 m, in the surf zone, also had reduced growth and were the only group to suffer significant colony mortality. At 8- and 15-m depth, growth rate of flat coral branches was not affected by orientation (parallel or perpendicular to flow) or shading. Compared with studies of other species, A. tenuifolia displays an ability to utilize a greater range of habitats and flow speeds, suggesting that it may have specific adaptations that allow it to tolerate very low flow conditions.     

Molecular basis of rheological modulation of endothelial functions: importance of stress direction

Vascular endothelial cells (EC) play significant roles in regulating circulatory functions. Shear stress and stretch can modulate EC functions by activating mechano-sensors, signaling pathways, and gene and protein expressions. Laminar shear stress with a significant forward direction causes transient activations of monocyte chemotactic protein-1 (MCP-1), sterol response element binding protein (SREBP), and proliferative genes. Sustained laminar shear stress down-regulates these genes and up-regulates genes that inhibit EC growth. In EC subjected to complex flow patterns with little forward direction, activations of MCP-1, SREBP, and proliferation genes become sustained, and mitosis and apoptosis are enhanced. Cyclic uniaxial stretch causes actin stress fibers to orient perpendicular to stretch direction, with a consequent reduction of intracellular stress, transient JNK activation, and protection of EC against apoptosis. Cyclic biaxial stretch without a preferred direction has opposite effects. In the straight part of arterial tree, laminar shear stress with a net forward direction and uniaxial strain in the circumferential direction have anti-atherogenic effects. At vascular branch points, the complex shear flow and mechanical strain with little net direction are atherogenic. Therefore, the direction of stress has important influences on the biorheological effects of flow and deformation on vascular endothelium in health and disease.     

Biaxial constitutive relations for the passive canine diaphragm.

Samples of the muscular sheet excised from the midcostal region of dog diaphragms were subjected to biaxial loading. That is, stresses in the direction of the muscle fibers and in the direction perpendicular to the fibers in the plane of the sheet were measured at different combinations of strains in the two directions. Stress-strain relations were obtained by fitting equations to these data. In the direction of the muscle fibers, for strains up to 0.7, stress is a modestly nonlinear function of strain and ranges up to approximately 60 g/cm. In the direction perpendicular to the fibers, the sheet is stiffer and more strongly nonlinear. At a strain in the perpendicular direction of approximately 0.35, stress increases abruptly. The stress-strain relation in the muscle direction is consistent with observations of passive muscle shortening in vivo. However, the stiffness in the perpendicular direction is not high enough to explain the observation that strains in the perpendicular direction in vivo are nearly zero. We conclude that, in the passive diaphragm in vivo, stress in the direction perpendicular to the muscle fibers is small.     

An Efficient, Nonlinear Stability Analysis for Detecting Pattern Formation in Reaction Diffusion Systems

Reaction diffusion systems are often used to study pattern formation in biological systems. However, most methods for understanding their behavior are challenging and can rarely be applied to complex systems common in biological applications. I present a relatively simple and efficient, nonlinear stability technique that greatly aids such analysis when rates of diffusion are substantially different. This technique reduces a system of reaction diffusion equations to a system of ordinary differential equations tracking the evolution of a large amplitude, spatially localized perturbation of a homogeneous steady state. Stability properties of this system, determined using standard bifurcation techniques and software, describe both linear and nonlinear patterning regimes of the reaction diffusion system. I describe the class of systems this method can be applied to and demonstrate its application. Analysis of Schnakenberg and substrate inhibition models is performed to demonstrate the methods capabilities in simplified settings and show that even these simple models have nonlinear patterning regimes not previously detected. The real power of this technique, however, is its simplicity and applicability to larger complex systems where other nonlinear methods become intractable. This is demonstrated through analysis of a chemotaxis regulatory network comprised of interacting proteins and phospholipids. In each case, predictions of this method are verified against results of numerical simulation, linear stability, asymptotic, and/or full PDE bifurcation analyses.     

Solid Lipid Nanoparticles as Delivery Systems for Bioactive Food Components

The inclusion of bioactive compounds, such as carotenoids, omega-3 fatty acids, or phytosterols, is an essential requisite for the production of functional foods designed to improve the long-term health and well-being of consumers worldwide. To incorporate these functional components successfully in a food system, structurally sophisticated encapsulation matrices have to be engineered, which provide maximal physical stability, protect ingredients against chemical degradation, and allow for precise control over the release of encapsulated components during mastication and digestion to maximize adsorption. A novel encapsulation system initially developed in the pharmaceutical industries to deliver lipophilic bioactive compounds is solid lipid nanoparticles (SLN). SLN consist of crystallized nanoemulsions with the dispersed phase being composed of a solid carrier lipid–bioactive ingredient mixture. Contrary to larger colloidal solid lipid particles, specific crystal structures can be “dialed-in” in SLN by using specific surfactant mixtures and ensuring that mean particle sizes are below 100–200 nm. Moreover, in SLN, microphase separations of the bioactive compound from the solidifying lipid matrix can be prevented resulting in an even dispersion of the encapsulated compound in the solid matrix thereby improving chemical and physical stability of the bioactive. In this review article, we will briefly introduce the structure, properties, stability, and manufacturing of solid lipid particles and discuss their emerging use in food science.     

1alpha,3beta,5beta-trihydroxy-24-methylenecholestan-6-one: a novel steroid from a soft coral Sinularia gibberosa

A novel steroid, 1alpha,3beta,5beta-trihydroxy-24-methylenecholestan-6-one (gibberoketosterol) (1), along with four known steroids, was isolated from the lipophilic extracts of a Taiwanese soft coral Sinularia gibberosa. The structure of the new metabolite was determined on the basis of extensive spectral analyses and chemical reaction. The relative stereochemistry of gibberoketosterol was established by the NOESY experiments and analysis of the pyridine-induced deshielding effect of the axial hydroxy groups. Gibberoketosterol is the first example of 1alpha,3beta,5beta-trihydroxy-6-oxosteroids isolated from natural sources and was found to exhibit a moderate cytotoxicity against the growth of Hepa59T/VGH cancer cells.     

Size-structured demographic models of coral populations

The demographic processes of growth, mortality, and the recruitment of young individuals, are the major organizing forces regulating communities in open systems. Here we present a size-structured (rather than age-structured) population model to examine the role of these different processes in space-limited open systems, taking coral reefs as an example. In this flux-diffusion model the growth rate of corals depends both on the available free-space (i.e. density-dependence) and on the particular size of the coral. In our analysis we progressively study several different forms of growth rate functions to disentangle the effects of free space and size-dependence on the model's stability. Unlike Roughgarden et al. [1985. Demographic theory for an open marine population space-limited recruitment. Ecology 66(1), 54-67], whose principal result is that the growth of settled organisms is destabilizing, we find that size-dependent growth rate often has the potential to endow stability. This is particularly true, if the growth rate is dependent on available free space (i.e. density dependent), but examples are given for growth rates that even lack this property. Further insights into reef system fragility are found through studying the sensitivity of the model steady state to changes in recruitment.     

Bacterial chemotaxis transverse to axial flow in a microfluidic channel

Swimming bacteria sense and respond to chemical signals in their environment. Chemotaxis is the directed migration of a bacterial population toward increasing concentrations of a chemical that they perceive to be beneficial to their survival. Bacteria that are indigenous to groundwater environments exhibit chemotaxis toward chemical contaminants such as hydrocarbons, which they are also able to degrade. This phenomenon may facilitate bioremediation processes by bringing bacteria into closer proximity to these contaminants. A microfluidic device was assembled to study chemotaxis transverse to advective flow. Using a T-shaped channel design (T-sensor), two fluid streams were brought into contact by impinging flow. They then flowed adjacent to each other along a transparent channel. An advantage to this design is that it allows real-time visualization of bacterial distributions within the channel. Under laminar flow conditions a chemotactic driving force was created perpendicular to the direction of flow by diffusion of the chemical attractant from one input stream to the other. A comparison of the chemotactic band behavior in the absence and presence of flow showed that fluid velocity did not significantly impede chemotactic migration in the transverse direction.     

“Choice” and destiny: the substrate composition and mechanical stability of settlement structures can mediate coral recruit fate in post-bleached reefs

Increasingly frequent and intense ocean warming events seriously test the buffer and recovery capacities of tropical coral reefs. Post-disturbance, available settlement structures on a reef (often dead coral skeletons) vary considerably in their mechanical stability and substrate composition, critically influencing coral recruit settlement choice and fate. In the wake of a coral mass mortality in the Lakshadweep archipelago, we examine (1) the relative availability of recruit settlement structures (from stable to unstable: reef platform, dead massive coral, consolidated rubble, dead corymbose coral, dead tabular coral, and unconsolidated rubble) in 12 recovering reefs across three atolls in the archipelago, (2) the substrate composition [crustose coralline algae (CCA), mixed turf, macroalgae] of these structural forms, and (3) whether the choice and fate of young coral are mediated by the substrate and stability of different structural forms. For this, we measured the abundance and distribution of recruit (<1 cm), juvenile (1–5 cm), and young adult (5–10) corals of 24 common coral genera. Four years after the mass mortality, reefs differed considerably in composition of settlement structures. The structures themselves varied significantly in substrate cover with dead tables largely covered in CCA [60 ± 6.05 % (SE)] and dead corymbose coral dominated by mixed turf (61.83 ± 3.8 %). The youngest visible recruits (<1 cm) clearly preferred CCA-rich structures such as dead massives and tables. However, older size classes were rarely found on unstable structures (strongly “avoiding” tables, Ivlev’s electivity index, E = ?0.5). Our results indicate that while substrate cover might mediate coral choice, the mechanical stability of settlement structures is critical in determining post-settlement coral survival. The composition and availability of settlement structures on a reef may serve as a characteristic signature of its recovery potential, aiding in assessments of reef resilience.     

广西涠洲岛造礁珊瑚种群结构的空间分布

对2007年和2008年调查的涠洲岛沿岸海域垂直海岸方向的6条主剖面上20条分断面的影像资料、样品鉴定等资料的分析,涠洲岛石珊瑚共出现10科22属46种,9个未定种;角蜂巢珊瑚属(Favites)、滨珊瑚属(Porites)、蔷薇珊瑚属(Montipora)为优势类群,其属级重要值百分比分别为25.78%、17.47%、15.11%;各主剖面珊瑚种群优势类群分布各有差异,以西南部的W2、东北部的W5的珊瑚属种为较多,均为8科13属,其石珊瑚属种分布均匀度略高;涠洲岛珊瑚分布自岸向海分为砂砾及珊瑚断枝带、石珊瑚稀疏带、石珊瑚繁盛带、柳珊瑚繁盛带4 个生物地貌带,石珊瑚分布较多的石珊瑚繁盛带主要分布于-1.39--5 m的水深范围内。石珊瑚形态组合以块状/亚块状与板块状为主要类型,覆盖程度以块状/亚块状占优。调查区受1998年的"厄尔尼诺现象"引起的全球性极高温事件和2008年1-2月的极低温气候事件及地域性不合理人类活动胁迫影响较大,枝状形态石珊瑚覆盖度、优势程度下降,已退出属种优势组合。     

Ecological Aspects of Some Coral-Boring Gastropods and Bivalves of the Northwestern Red Sea

More than 17 molluscan species were obtained from burrows incoral substrata at Al-Ghardaga (Hurghada on maps) on the RedSea coast, six of which in particular bore into livingcolonies.The species reported in this paper belong to the families Mytilidae,Coralliophilidae, and Gastrochaenidae. The direction of boringin living corals is to the outside, the borers keeping pacewith the growing coral layer to maintain their burrows open.Coral growth is generally of a higher rate than that of borers,and burrows are accordingly mostly much larger than their inhabitants.There is evidence in such cases that burrows form initiallyby growth of coral around the settling young. Boring of Lithophagaspecies is mostly due to the abrasive action of the shell whichmoves straight and posteroventrally without any rotation. Incoralliophilids,boring is also executed mechanically by the turning movementsof the shell. Boring in dead coral is directed inwards, andburrows are nearly as large as the borers. The latter avoidthe blocking of their burrows (e.g., by a living coral incrustation)either by great siphonal extension (Rocellaria) or the freeends of the shell may be strengthened to maintain the capabilityof boring in the opposite direction (Lithophaga laevigata).Both L. luevigata and Modiola chmamomeus bore mainly mechanicallyby the rocking movements of the shell. Chemical boring is stilla possibility,particularly in the posterior narrow region ofburrows of Modiola lodging the extended pallial siphons whichare deprived of any effective mechanical devices for boring.Therole of boring algae in rarefying bored coral material hasalso to be included as an indirect chemical factor.     

Nutritional resources as positional information for morphogenesis in the stony coral Stylophora pistillata

We are interested in deciphering the mechanisms for morphogenesis in the Red Sea scleractinian coral Stylophora pistillata with the help of mathematical models. Previous mathematical models for coral morphogenesis assume that skeletal growth is proportional to the amount of locally available energetic resources like diffusible nutrients and photosynthetic products. We introduce a new model which includes factors like dissolved nutrients and photosynthates, but these resources do not serve as building blocks for growth but rather provide some kind of positional information for coral morphogenesis. Depending on this positional information side branches are generated, splittings of branches take place and branch growth direction is determined. The model results are supported by quantitative comparisons with experimental data obtained from young coral colonies.     

Taxonomic status of Euphylliidae corals in Peninsular Malaysia based on morphological structures and phylogenetic analyses using mitochondrial COI gene

The morphological and molecular studies provide greater taxonomic resolution for the scleractinian coral identification. The Euphylliidae corals are among the scleractinian family for which their corallite and polyp morphologies have been examined for species identification. However, knowledge on the molecular study for coral identification in Malaysia is very limited. Therefore, this study aimed to examine the morphological structures and phylogenetic analyses for six Euphylliidae coral species using the mitochondrial gene of cytochrome oxidase subunit I (COI). The results showed that the Euphylliidae corals are present under both “complex” and “robust” coral clades as supported by many researchers. The result also revealed that the species phylogeny of Euphylliidae corals is in concordances with its morphological structures of corallites. It can be concluded the combination between morphological structures and phylogenetic analyses provide more accurate identification than relying on morphological study alone. Hence, it provides a future direction for the scleractinian research progress in species identification.     

Self-organization of large-scale ULF electromagnetic wave structures in their interaction with nonuniform zonal winds in the ionospheric E region

A study is made of the generation and subsequent linear and nonlinear evolution of ultralow-frequency planetary electromagnetic waves in the E region of a dissipative ionosphere in the presence of a nonuniform zonal wind (a sheared flow). Hall currents flowing in the E region and such permanent global factors as the spatial nonuniformity of the geomagnetic field and of the normal component of the Earth’s angular velocity give rise to fast and slow planetary-scale electromagnetic waves. The efficiency of the linear amplification of planetary electromagnetic waves in their interaction with a nonuniform zonal wind is analyzed. When there are sheared flows, the operators of linear problems are non-self-conjugate and the corresponding eigenfunctions are nonorthogonal, so the canonical modal approach is poorly suited for studying such motions and it is necessary to utilize the so-called nonmodal mathematical analysis. It is shown that, in the linear evolutionary stage, planetary electromagnetic waves efficiently extract energy from the sheared flow, thereby substantially increasing their amplitude and, accordingly, energy. The criterion for instability of a sheared flow in an ionospheric medium is derived. As the shear instability develops and the perturbation amplitude grows, a nonlinear self-localization mechanism comes into play and the process ends with the self-organization of nonlinear, highly localized, solitary vortex structures. The system thus acquires a new degree of freedom, thereby providing a new way for the perturbation to evolve in a medium with a sheared flow. Depending on the shape of the sheared flow velocity profile, nonlinear structures can be either purely monopole vortices or vortex streets against the background of the zonal wind. The accumulation of such vortices can lead to a strongly turbulent state in an ionospheric medium.     

Coral-associated bacterial communities on Ningaloo Reef, Western Australia

Coral-associated microbial communities from three coral species (Pocillopora damicornis, Acropora tenuis and Favites abdita) were examined every 3 months (January, March, June, October) over a period of 1 year on Ningaloo Reef, Western Australia. Tissue from corals was collected throughout the year and additional sampling of coral mucus and seawater samples was performed in January. Tissue samples were also obtained in October from P. damicornis coral colonies on Rottnest Island off Perth, 1200 km south of Ningaloo Reef, to provide comparisons between coral-microbial associates in different locations. The community structures of the coral-associated microorganisms were analysed using phylogenetic analysis of 16S rRNA gene clone libraries, which demonstrated highly diverse microbial profiles among all the coral species sampled. Principal component analysis revealed that samples grouped according to time and not species, indicating that coral-microbial associations may be a result of environmental drivers such as oceanographic characteristics, benthic community structure and temperature. Tissue samples from P. damicornis at Rottnest Island revealed similarities in bacteria to the samples at Ningaloo Reef. This study highlights that coral-associated microbial communities are highly diverse; however, the complex interactions that determine the stability of these associations are not necessarily dependent on coral host specificity.