Albertania and Egbenema gen. nov. from Nigeria and the United States,expanding biodiversity in the Oculatellaceae (cyanobacteria)

Knowledge of the tropical terrestrial cyanobacterial flora from the African continent is still limited. Of 31 strains isolated from soil and subaerial samples collected in Lagos State, Nigeria, three were found to be in the Oculatellaceae, including two species in a new genus. Subsequently, isolates from microbial mats in White Sands National Park in New Mexico, United States, and from a rock near the ocean in Puerto Rico, United States, were found to belong to the new genus as well. Cyanobacterial isolates were characterized microscopically, sequenced for the 16S rRNA gene and associated ITS region, and phylogenetically analyzed. Egbenema gen. nov., with three new species, as well as two new species of Albertania were differentiated from all other Oculatellaceae. Both genera belong to a supported clade within the Oculatellaceae that includes Trichotorquatus and Komarkovaea. The two new species of Albertania, A. egbensis and A. latericola, were from the same sample, but were evolutionarily separate based on 16S rRNA gene phylogenies, percent identity below the 98.7% threshold, and ITS rRNA percent dissimilarity >7.0%. Egbenema aeruginosum gen. et sp. nov. was phylogenetically separated from Trichotorquatus and Albertania but was in a clade with other strains belonging to Egbenema. The two Egbenema strains from the United States are here named Egbenema epilithicum sp. nov. and Egbenema gypsiphilum sp. nov. Our results support the hypothesis that further species discoveries of novel cyanobacteria will likely be made in soils and subaerial habitats, as these habitats continue to be studied, both in tropical and temperate biomes.     

Structure of a monomeric photosystem II core complex from a cyanobacterium acclimated to far-red light reveals the functions of chlorophylls d and f

Far-red light (FRL) photoacclimation in cyanobacteria provides a selective growth advantage for some terrestrial cyanobacteria by expanding the range of photosynthetically active radiation to include far-red/near-infrared light (700–800 nm). During this photoacclimation process, photosystem II (PSII), the water:plastoquinone photooxidoreductase involved in oxygenic photosynthesis, is modified. The resulting FRL-PSII is comprised of FRL-specific core subunits and binds chlorophyll (Chl) d and Chl f molecules in place of several of the Chl a molecules found when cells are grown in visible light. These new Chls effectively lower the energy canonically thought to define the “red limit” for light required to drive photochemical catalysis of water oxidation. Changes to the architecture of FRL-PSII were previously unknown, and the positions of Chl d and Chl f molecules had only been proposed from indirect evidence. Here, we describe the 2.25 Å resolution cryo-EM structure of a monomeric FRL-PSII core complex from Synechococcus sp. PCC 7335 cells that were acclimated to FRL. We identify one Chl d molecule in the Chl_D1 position of the electron transfer chain and four Chl f molecules in the core antenna. We also make observations that enhance our understanding of PSII biogenesis, especially on the acceptor side of the complex where a bicarbonate molecule is replaced by a glutamate side chain in the absence of the assembly factor Psb28. In conclusion, these results provide a structural basis for the lower energy limit required to drive water oxidation, which is the gateway for most solar energy utilization on earth.     

Are two photoreceptors involved in the flowering of a long-day plant?

The effect of daylength extension with narrow spectral bands on the flowering of a long-day plant, Brassica campestris L. cv. Ceres, was investigated to obtain clues to the identity of the photoreceptor involved. Extension of a 9 h photoperiod with 5 h of light pulses at various wavelengths resulted in maximal flowering occurring after irradiation at 710 nm, less at 730 nm, and none at 550, 660 and 750 nm. Flowering at 710 and 730 nm was negated by simultaneous exposures at 550 nm, but not at 660 nm. A short preirradiation at 660 nm enabled a following irradiation at 750 nm to induce flowering. This latter induction was prevented by 550 nm irradiation.
Short flashes of light at 710 nm induced flowering that was negated by a following flash at 550 nm but not at 660 nm. The negation by 550 nm radiation was prevented by subsequent flashes at 710 nm, indicating photoreversibility. A flash at 660 nm enabled subsequent light flashes at 750 nm to initiate flowering that was reversed by a following 550 nm flash.
From the results showing the necessity of red and far-red lights, it is proposed that flowering in this long-day plant is due to two photoreceptors - one is phytochrome and the other an unknown pigment with far-red, green photoreversible properties. By using fluence response data, it is deduced that the unidentified photoreceptor has weak absorption bands in the far-red, but has a strong absorption band in the green. Flowering is induced when effects of red light absorbed by phytochrome interact with effects of far-red light absorbed by the unidentified photoreceptor.     

Structure of a photosystem I-ferredoxin complex from a marine cyanobacterium provides insights into far-red light photoacclimation

Far-red light photoacclimation exhibited by some cyanobacteria allows these organisms to use the far-red region of the solar spectrum (700–800 nm) for photosynthesis. Part of this process includes the replacement of six photosystem I (PSI) subunits with isoforms that confer the binding of chlorophyll (Chl) f molecules that absorb far-red light (FRL). However, the exact sites at which Chl f molecules are bound are still challenging to determine. To aid in the identification of Chl f-binding sites, we solved the cryo-EM structure of PSI from far-red light-acclimated cells of the cyanobacterium Synechococcus sp. PCC 7335. We identified six sites that bind Chl f with high specificity and three additional sites that are likely to bind Chl f at lower specificity. All of these binding sites are in the core-antenna regions of PSI, and Chl f was not observed among the electron transfer cofactors. This structural analysis also reveals both conserved and nonconserved Chl f-binding sites, the latter of which exemplify the diversity in FRL-PSI among species. We found that the FRL–PSI structure also contains a bound soluble ferredoxin, PetF1, at low occupancy, which suggests that ferredoxin binds less transiently than expected according to the canonical view of ferredoxin-binding to facilitate electron transfer. We suggest that this may result from structural changes in FRL-PSI that occur specifically during FRL photoacclimation.     

红麻和白麻叶绿素荧光日变化研究初探

用便携式叶绿素荧光仪测定了红麻和白麻的叶绿素荧光参数:初始荧光(Fo)、光系统Ⅱ(PSⅡ)原初光能转化效率(Fv/Fm)和PSⅡ的实际光化学效率(Yield).研究结果表明:在一天中,红麻和白麻均在中午出现Fo最低值(红麻为96,白麻为100),说明红麻和白麻可通过增强非辐射能量耗散来消耗过剩的光能,从而避免光合器官遭受破坏.在一天中,白麻Fv/Fm均高于红麻2.8%,表明红麻对光抑制比白麻敏感.红麻的yield值比白麻的高7.0%,表明红麻比白麻具有更高的光能转化效率.     

The diagnostic value of reproductive organs in some genera of articulated Coralline red algae

Clearcut differences exist between the reproductive organs of Corallina and Jania. Fully formed spermatangial conceptacles in Corallina have low ceillings and pronounced beaks whereas in Jania they have high ceilings and lack beaks. Fusion cells in carposporophytic conceptacles are thin and broad in the former genus and thick and narrow in the latter. Tetrasporangial conceptacles have less capacity in Jania than in Corallina and the fertile areas in young conceptacles cover a smaller area.

Haliptylon is changed from group to generic status and Corallina subulata is transferred to this genus. Haliptylon is characterised by conceptacles similar in all known respects to those of Jania, but the branching is pinnate, as in Corallina.

From the available evidence it appears possible that organisms having Corallina-type conceptacles diverged phylogenetically long ago from those having Jania-type conceptacles.     

A polyphasic approach for the taxonomy of cyanobacteria: principles and applications

Taxonomic classification is the only method for understanding and exploring knowledge about organismal diversity. However, it is complicated in prokaryotic, phylogenetically old, phototrophic cyanobacteria, which contain very simple unicellular forms up to multicellular types with a differentiated and diversified thallus. Their cells are cytologically relatively simple, but variable in shape. Various genotypes are adaptable to various specialized ecosystems. The introduction and combination of modern molecular, cytomorphological and ecological methods in the taxonomy of cyanobacteria is necessary and should be accepted as the only method for the elaboration of their modern systematics. The combination of different methods should be based on molecular sequencing as the basic approach, to which must be added other criteria (morphological, ecological) if they are available and which are distinct and recognizable in cyanobacterial populations. The use of such characteristics is necessary and must be obligatorily included for the final characterization both of strains and natural populations. Application of this polyphasic, i.e. combined approach is considered as a unique, modern, unambiguous, unequivocal and a fully acceptable methodological procedure, but it is not yet commonly used, nor possible for all known cyanobacterial populations. The main principles and recent problems of this modern classification method are discussed in the following review and will be the basis of further discussion.     

Intermittent-light chloroplasts are not developmentally equivalent to chlorina f2 chloroplasts in barley

Both the chlorina f2 mutant of barley and plants grown under intermittent light have fully functional photosystems but completely lack Chl b. These two systems were compared for the presence or absence of Chl a+b-binding polypeptides using snsitive immunoblotting techniques. Both types of plants contained the apoprotein of CP29 and the minor 25 kD polypetide of LHCII, and were severely depleted in the major LHCII polypeptides. However, intermittent light plants were completely lacking LHCI polypeptides, in contrast to chlorina f2 which has at least some of them (White and Green 1987b). None of the polypeptides could be detected in dark-grown plants. This shows that intermittent light plants are not physiologically or developmentally equivalent to chlorina f2 plants. Different factors appear to be involved in controlling the synthesis/accumulation of the polypeptides of the three complexes.Abbreviations SDS-PAGE sodium dodecyl sulfate polyacrylamide gel electrophoresis - ImL plants plants grown under intermittent light regime     

Drouetiella epilithica sp. nov. and Drouetiella lurida (Oculatellaceae,Synechococcales) isolated in the Republic of Korea based on the polyphasic approach

Five strains of Drouetiella (ACKU666, 667, 668, 669 and 670) were isolated from gravels in water, stone monument and coastal mudflat in Korea, and were studied using morphological and molecular traits. All five strains had thin and simple trichomes and exhibited false branching. From these strains, four strains (ACKU666, 667, 668 and 669) exhibited similar cell lengths with reddish–brown colored cells such as Drouetiella lurida. The 16S rRNA gene phylogeny showed the four strains formed a clade with Drouetiella lurida, and their DNA similarity was calculated to be 99.1–100%. The color of strain ACKU670 appeared to be in bright blue–green color like Drouetiella fasciculata, and their thylakoids showed a parietal arrangement, which is a characteristic feature of the family Oculatellaceae. Strain ACKU670 turned out to be a sister clade to the D. lurida according to the phylogenetic analysis of the 16S rRNA gene. The 16–23S rRNA internal transcribed spacer secondary folding structure (D1–D1′, Box-B and V3 helices) confirmed the uniqueness of strain ACKU670, therefore indicating differences from the related species. Considering all the results, we described our strain ACKU670 as Drouetiella epilithica sp. nov. in accordance with the International Code of Nomenclature for Algae, Fungi and Plants.     

Igniting taxonomic curiosity: The amazing story of Amazonocrinis with the description of a new genus Ahomia gen. nov. and novel species of Ahomia,Amazonocrinis, and Dendronalium from the biodiversity-rich northeast region of India

Five cyanobacterial strains exhibiting Nostoc-like morphology were sampled from the biodiversity hotspots of the northeast region of India and characterized using a polyphasic approach. Molecular and phylogenetic analysis using the 16S rRNA gene indicated that the strains belonged to the genera Amazonocrinis and Dendronalium. In the present investigation, the 16S rRNA gene phylogeny clearly demarcated two separate clades of Amazonocrinis. The strain MEG8-PS clustered along with Amazonocrinis nigriterrae CENA67, which is the type strain of the genus. The other three strains ASM11-PS, RAN-4C-PS, and NP-KLS-5A-PS clustered in a different clade that was phylogenetically distinct from the Amazonocrinis sensu stricto clade. Interestingly, while the 16S rRNA gene phylogeny exhibited two separate clusters, the 16S–23S ITS region analysis did not provide strong support for the phylogenetic observation. Subsequent analyses raised questions regarding the resolving power of the 16S–23S ITS region at the genera level and the associated complexities in cyanobacterial taxonomy. Through this study, we describe a novel genus Ahomia to accommodate the members clustering outside the Amazonocrinis sensu stricto clade. In addition, we describe five novel species, Ahomia kamrupensis, Ahomia purpurea, Ahomia soli, Amazonocrinis meghalayensis, and Dendronalium spirale, in accordance with the International Code of Nomenclature for algae, fungi, and plants (ICN). Apart from further enriching the genera Amazonocrinis and Dendronalium, the current study helps to resolve the taxonomic complexities revolving around the genus Amazonocrinis and aims to attract researchers to the continued exploration of the tropical and subtropical cyanobacteria for interesting taxa and lineages.     

Light-induced increase in initial chlorophyll fluorescence Fo level and the reversible inactivation of PS II reaction centers in soybean leaves

With a portable PAM-2000 fluorometer it was observed that responses of initial chlorophyll fluorescence F_o level to strong light were different in various plant species examined. When the photochemical efficiency of Photosystem II, F_v/F_m, declined, F_o increased significantly in leaves of some plants such as soybean and cotton, while F_o decreased remarkably in other plants such as wheat and barley. In order to explore the mechanism of the increase in F_o in soybean leaves, the change in D1 protein amount and effects of lincomycin and far-red light on these fluorescence parameters were observed by SDS–PAGE combined with gel scanning and chlorophyll fluorescence analysis. The following results were obtained. (1) The amount of inactive PS II reaction centers increased under strong light and decreased during subsequent dark recovery [Hong and Xu (1997) Chinese Sci Bull 42(8): 684–689]. (2) No net loss of D1 protein occurred after strong light treatment. (3) Lincomycin taken up through petioles following strong light treatment had no significant effect on D1 protein level and the decay of F_o in the dark. (4) Far-red light applied after strong light treatment could largely attenuate the increase in F_o and accelerate F_o decay in the dark. Based on these results, it is deduced that the increase in F_o under strong light is mainly due to reversible inactivation of part of PS II reaction centers, rather than the net loss of D1 protein and that reversible inactivation of PS II is prevalent in some plants.     

Role of phytochrome in photoperiodic regulation of bulbing and growth in the long day plant Allium cepa

Plant elongation in Allium cepa L. cv. Dorata di Parma was stimulated by end-of-day far-red radiation, while the same treatment was ineffective with respect to bulbing response. It was concluded that the P_fr-dependent reactions which control bulbing are completed during the long daily light period (18 h). Day breaks of 3 h fluorescent white light, in the middle of the inductive photoperiod were inhibitory to bulbing. Repeated brief far-red irradiations could substitute for continuous far-red irradiations lasting 3 h in the middle of the photoperiod. Red light alone or applied immediately after each far-red irradiation inhibits bulb formation.     

不同光强对加拿大一枝黄花生长和叶绿素荧光的影响

以外来入侵种加拿大一枝黄花(Solidago canadensis)为研究对象,在4种光照强度处理下,对其光合色素含量、叶绿素荧光特性、比叶重、植株的生长特征和生物量分配等指标进行了测定分析.结果表明:(1)随着光照强度的减弱,加拿大一枝黄花叶片的Chla、Chlb和Chl(a b)均上升,Chla/Chlb下降,4种光强处理下叶片的初始荧光(Fo)、光系统Ⅱ实际光化学效率(ФPSⅡ)、光系统Ⅱ最大光能转化效率(Fv/Fm)日变化曲线相似,高光强下的Fo、ФPSⅡ和Fv/Fm均小于中、低和弱光强下的,这说明加拿大一枝黄花能适应较大的光强幅度,同时对低、弱光强有一定的抗逆性.(2)生长在高(RI为100%)、中(RI为60%)光强下的加拿大一枝黄花植株正常生长,生长于低(RI为20%)弱(RI为5%)光强下的植株生长不良,表现为植株矮小,茎秆细弱.中度的遮荫对它的生长没有明显影响,但在严重遮阴下生长受抑.(3)生长在高、中光强下的总生物量、地下部分生物量明显增多,低、弱光强处理下的叶生物量比显著增加.结果表明,加拿大一枝黄花在高、中光强下对生长最有利,能够适应较大幅度的光照变化,但在严重遮阴下生长明显受抑,说明该入侵植物不易入侵到密林等光照强度比较弱的生境.     

持续低温弱光对黄瓜叶片气体交换、叶绿素荧光猝灭和吸收光能分配的影响

持续常温弱光(25℃/18℃,l00umol m-2 s-1)、低温弱光(12℃/12℃,100 umol m-2 s-1和7℃/7℃,l00μmolm-2s-1)均导致黄瓜生长减慢或停滞、叶绿素含量、气孔导度和净光合速率、光合电子传递速率下降以及胞间CO2浓度上升.常温弱光和12℃弱光处理对光系统II的最大光化学效率Fv/Fm无显著影响,而7℃弱光处理导致Fv/Fm的可逆性下降.常温弱光和7℃、12℃弱光处理均导致了光化学反应速率的降低以及天线热耗散和反应中心过剩能量的增加.在胁迫后,12℃弱光0比7℃弱光更有利于植株光合功能的恢复.     

强光及外源活性氧对莴苣叶绿素荧光的影响

莴苣叶绿体在强光处理下发生先抑制,主要表现为叶绿素荧光参数Fv／Fm和ΦPSⅡ降低;外源活性氧H2O2、O2·OH和1O2均能引起叶绿体PSⅡ光化学效率Fv／Fm不同程度的下降,其中以1O2影响最明显;H2O2在诱导叶绿体荧光猝灭过程中,引起荧光产量降低,而使qp、qN、ΦPSⅡ、KD上升;在H2O2诱导的叶绿体荧光猝灭过程中,Fe2 能使qN和KD低于对照;由于1O2的产生对PSⅡ反应中心造成了损伤,引起qp和ΦPSⅡ下降。     

Effect of benzimidazole and nickel ions in the control of Oryza sativa leaf senescence by red and far-red light

Changes in the levels of chlorophyll and protein were determined in detached rice leaves floated on water, benzimidazole (mM) and nickel chloride (mM) under continuous dark, red (R) and far-red (FR) illumination. Senescence was enhanced under FR and retarded under R illumination as compared to the dark treatment for leaves floated both on water and benzimidazole solution. Benzimidazole and nickel ions also delayed the senescence of leaves still further, although only to a limited extent under FR illumination. Protein changes showed similar trends to chlorophyll during senescence.     

强光胁迫对濒危植物金花茶幼苗生长和叶绿素荧光参数的影响

以当年生盆栽金花茶实生苗为材料,研究不同程度的强光胁迫（25％、50％和100％自然光强,以8%自然光强为对照）对其生长、生物量、叶片光合色素含量、叶绿素荧光参数的影响。结果表明：在不同程度的强光胁迫下,金花茶幼苗的生长均受到抑制,随着胁迫程度的增强,金花茶叶片颜色由深绿变为浅绿、黄绿色,叶片灼伤愈来愈严重;植株抽稍时间推迟,抽稍后长出的新叶长势较差;幼苗死亡率越来越高。幼苗根生物量、茎生物量、叶生物量和总生物量均随胁迫程度的升高而显著降低,强光胁迫对叶生物量的影响最大,根生物量次之,对茎生物量的影响最小。随着胁迫程度的增强,叶片叶绿素总量（Chl）、叶绿素a（Chla）、叶绿素b（Chlb）含量均显著降低,Chla/Chlb和Car/Chl显著升高。叶绿素荧光参数F_o、F_m、F_v、F_v/F_m、F_v/F_o均随胁迫程度的升高降低,强光胁迫使PSⅡ受到了伤害,光合作用原初反应过程受抑制,光合电子传递受到影响,从而抑制植株的正常生长。