Phylogenetic analyses of Japanese golden chanterelles and a new species description,Cantharellus anzutake sp. nov.

The Japanese golden chanterelle commonly identified as Cantharellus cibarius was sampled in a broad range of forest vegetation. A total of 90 fresh and 11 herbarium specimens were examined microscopically, subjected to sequencing analysis of their nuclear ribosomal RNA (rDNA) and tef-1 genes, and their characteristics were compared with those of European C. cibarius. Based on morphological and ecological characteristics, basidioma samples from Japan were divided into four species. While specimens of Cantharellus sp. 4 from Hokkaido Island were included in the European C. cibarius clade phylogenetically, the other three species formed three unique clades. Among these, Cantharellus anzutake sp. nov. is sister to the clade of C. cibarius and was widely sampled from the northern limit of Honshu Island to the southern limit of Kumejima Island in Ryukyu Islands. Although C. anzutake was morphologically similar to C. cibarius, the two species were phylogenetically distinct. Other morphologically similar but genetically distinct chanterelle species from India exhibited macroscopic and microscopic differences compared with C. anzutake.     

New anamorphic yeast species: Candida infanticola sp. nov., Candida polysorbophila sp. nov., Candida transvaalensis sp. nov. and Trigonopsis californica sp. nov

Three new species of Candida and a new species of Trigonopsis are described based on their recognition from phylogenetic analysis of gene sequences from large subunit ribosomal RNA, ITS1/ITS2 rRNA, mitochondrial small subunit rRNA and cytochrome oxidase II. Candida infanticola sp. nov. (type strain NRRL Y-17858, CBS 7922) was isolated from the ear of an infant in Germany and is closely related to Candida sorbophila. Candida polysorbophila sp. nov. (type strain NRRL Y-27161, CBS 7317) is a member of the Zygoascus clade and was isolated in South Africa as a contaminant from an emulsion of white oil and polysorbate. Candida transvaalensis sp. nov. (type strain NRRL Y-27140, CBS 6663) was obtained from forest litter, the Transvaal, South Africa, and forms an isolated clade with Candida santjacobensis. Trigonopsis californica sp. nov. (type strain NRRL Y-27307, CBS 10351) represents a contaminant from wine in California, and forms a well-supported clade with Trigonopsis cantarellii, Trigonopsis variabilis and Trigonopsis vinaria.     

Rocky shore turfs dominated by Corallina (Corallinales,Rhodophyta) in northern Japan†

Three intertidal sites dominated by Corallina turfs were investigated in Hokkaido, Japan. The sites (A, B and C) differed in slope, wave exposure and length of time exposed to air during tidal cycles. Monthly samples were analyzed for frond morphology and other features. Site A, the most wave-exposed site, was dominated by Corallina sp. X, an unknown species, and sites B and C by Corallina pilulifera Postels et Ruprecht. At the different sites the populations differed in conceptacle abundance, coverage by epiphytic Titanoderma corallinae (P. Crouan et H. Crouan) Woelkerling, Chamberlain et Silva, amount of contained sediment, numbers of axes per quadrat, numbers of branch fusions, branch entanglement, frond dryweight, frond length, amount of adventitious branching, numbers of epiphytes (exclusive of T. corallinae), and numbers of animal species. Ninety-one animal species were recorded from the turfs. Corallina is affected morphologically by conditions inherent in its microhabitat, including desiccation, epiphyte loading and the abundance of herbivores.     

TWO NEW SPECIES OF TAYLORIELLA (RHODOMELACEAE,RHODOPHYTA) FROM THE NORTHEASTERN NORTH PACIFIC1

Two new species are recognized in the rhodomelacean genus Tayloriella Kylin: T. divaricata sp. nov. and T. abyssalis sp. nov. These two taxa are distributed in the northeastern North Pacific, the former ranging from Amchitka Island in the Aleutians through southcentral Alaska to northern British Columbia, and the latter ranging also from Amchitka Island through southcentral Alaska and British Columbia into northern Washington. A characteristic of these two species shared with the type of Tayloriella is that the abaxial lateral always overtops the monopodially developed axes in every order of branching. The laterals have little congenital fusion with the parent axes. A common feature in these two species is that the laterals are terminated in a relatively long monosiphonous portion (usually 6 or 7 cells). The relationship of Tayloriella to Pterosiphonia and Pterosiphoniella is discussed.     

Systematic revision of the genus Phycodrys (Delesseriaceae,Rhodophyta) from New Zealand,with the descriptions of three new species,P. novae-zelandiae sp. nov., P. franiae sp. nov. and P. adamsiae sp. nov.

Two species of Phycodrys, Phycodrys quercifolia (Bory) Skottsberg and Phycodrys profunda E.Y.Dawson were previously recorded from New Zealand. However, an examination of Phycodrys collections from the New Zealand region showed that all were morphologically different from P. quercifolia (Type locality: the Falkland Islands) and P. profunda (Type locality: CA, USA). RbcL sequence analyses established that the New Zealand Phycodrys species formed a natural assemblage within the genus, consisting of three new species: P. novae-zelandiae sp. nov., P. franiae sp. nov. and P. adamsiae sp. nov. Phycodrys novae-zelandiae is the largest of the three, up to 20 cm in height, with a distinct midrib and multicellular, opposite to subopposite lateral macroscopic veins. It has entirely monostromatic blades except near the midrib and veins, and its procarp contains a three-celled sterile group one (st1) and a one-celled sterile group two (st2). Phycodrys franiae was previously treated as a cryptic species among herbarium collections of P. ‘quercifolia’. It is smaller (4–11 cm high) with weakly developed midribs and veins, the blade is tristromatic throughout, except at the growing margins, and the procarp consists of a four-celled st1 and a two–three-celled st2. Phycodrys adamsiae, previously reported as P. profunda, is a small decumbent or prostrate plant, 1–8 cm long, with a midrib and inconspicuous lateral veins. The blades are tristromatic with serrated margins, two–four-celled surface spines and multicellular marginal holdfasts that differ from those of Californian specimens. The tetrasporangia are borne on marginal bladelets. Phylogenetic analyses place the New Zealand species in a separate group that is distantly removed from most other Phycodrys species.     

<Emphasis Type="Italic">Paraliparis adustus</Emphasis> and <Emphasis Type="Italic">Paraliparis bullacephalus</Emphasis>: two new snailfish species (Teleostei: Liparidae) from Alaska

Paraliparis adustus sp. nov., a snailfish species from the Bering Sea near the Aleutian Island Archipelago, Alaska, is described based on a single mesopelagic specimen. This new species is clearly distinguished by a combination of several morphological features and meristic counts, including long pointed gill rakers with 0–3 spinules at or near the tip, anus positioned forward near the pectoral symphysis, and color uniform brown. Paraliparis bullacephalus sp. nov. from Shelikof Strait, Gulf of Alaska, is also described. This new species is very similar in meristic characters and general body shape and size to P. holomelas Gilbert, but differs primarily in morphological features of the head, particularly in the shape of the dorsal contour of the head, snout, and opercular flap, mouth size, and eye position.     

A molecular evaluation of the Liagoraceae sensu lato (Nemaliales,Rhodophyta) in Bermuda including Liagora nesophila sp. nov. and Yamadaella grassyi sp. nov.

We have undertaken a comprehensive, molecular‐assisted alpha‐taxonomic examination of the rhodophyte family Liagoraceae sensu lato, a group that has not previously been targeted for molecular studies in the western Atlantic. Sequence data from three molecular markers indicate that in Bermuda alone there are 10 species in nine different genera. These include the addition of three genera to the flora — Hommersandiophycus, Trichogloeopsis, and Yamadaella. Liagora pectinata, a species with a type locality in Bermuda, is phylogenetically allied with Indo‐Pacific species of Hommersandiophycus, and the species historically reported as L. ceranoides for the islands is morphologically and genetically distinct from that taxon, and is herein described as L. nesophila sp. nov. Molecular sequence data have also uncovered the Indo‐Pacific L. mannarensis in Bermuda, a long‐distance new western Atlantic record. DNA sequences of Trichogloeopsis pedicellata from the type locality (Bahamas) match with local specimens demonstrating its presence in Bermuda. We described Yamadaella grassyi sp. nov. from Bermuda, a species phylogenetically and morphologically distinct from the generitype, Y. caenomyce of the Indo‐Pacific. Our data also indicated a single species each of Ganonema, Gloiocallis, Helminthocladia, Titanophycus, and Trichogloea in the flora.     

Margaretbarromyces dictyosporus gen. sp. nov.: a permineralized corticolous ascomycete from the Eocene of Vancouver Island, British Columbia

A single, permineralized ascoma resembling a pseudothecium assignable to the Pleosporales is described from the Eocene Appian Way fossil locality on Vancouver Island, British Columbia. The ascoma is globose, ostiolate, and erumpent on a fragment of the bark from an unidentified seed plant. Basally arranged asci contain large, multicelled, obovate ascospores within a single cavity or locule enclosed by a two-layered pseudoparenchymatous tissue that ostensibly represents ascostroma. Given this interpretation of the specimen's morphological features, Margaretbarromyces dictyosporus gen. sp. nov. represents the first report of a corticolous pleosporalean ascoma in the fossil record.     

Comparing total body lipid content of young‐of‐the‐year Steller sea lions among regions of contrasting population trends

Steller sea lion (Eumetopias jubatus) young‐of‐the‐year (YOY) are nutritionally dependent upon their dam through the majority of their first year. Several indices of body condition were measured in YOY 1.5–9 mo of age captured in Southeast Alaska (n = 122), the Gulf of Alaska (n = 182), and the Aleutian Islands (n = 38) to test the hypothesis that nutritional stress impacted the ability of adult female Steller sea lions to adequately nourish their late gestation YOY in the central Aleutian Islands in the early 2000s. Body mass (kg) and percent total body lipid content (%TBL) increased with age in all three regions of Alaska that were sampled (P < 0.05). Young‐of‐the‐year 7–9 mo of age were leaner in Southeast Alaska (27.6% ± 1.0%) and Gulf of Alaska (29.5% ± 0.8%) than in the Aleutian Islands (35.7% ± 1.2%, P < 0.001). Condition indices calculated from morphometric measures did not strongly predict the %TBL measured by isotope dilution. The trend for Aleutian Island YOY to have larger body mass and larger body fat reserves are counter to what would be expected if dams were unable to adequately provision their late lactation YOY due to inadequate food availability in the central Aleutian Islands.     

Review and phylogeny of the New Zealand hagfishes (Myxiniformes: Myxinidae), with a description of three new species

Hagfishes from New Zealand are reviewed and a phylogeny proposed using morphological and genetic data (DNA sequences of cytochrome c oxidase subunit I gene, COI, and the small subunit RNA, 16S). E ptatretus cryptus sp. nov. was previously confused with Eptatretus cirrhatus (Forster in Bloch & Schneider, 1801) because of their similar morphology, and is found from the Three Kings Islands to Stewart Island and in the eastern part of the Chatham Rise (at depths of 96–922 m). E ptatretus poicilus sp. nov. is endemic to the Three Kings Islands, where it is common and associated with soft sediment and deep‐sea coral‐sponge habitats (114–842 m). N eomyxine caesiovitta sp. nov. is a slender hagfish found along the east coast of the North Island south to the Chatham Rise (430–1083 m). A neotype is erected for E. cirrhatus (type locality: Breaksea Sound, Fiordland), occurring widely in New Zealand coastal, shelf, and slope waters (1–922 m), but not at the Three Kings Islands. Eptatetrus goliath Mincarone & Stewart, 2006, Neomyxine biniplicata (Richardson & Jowett, 1951), and Nemamyxine elongata Richardson, 1958 are further described using additional material. Rubicundus eos (Fernholm, 1991) is still only known from the holotype (type locality: Challenger Plateau). Genetic results showed that the New Zealand Eptatretus species form a monophyletic group within the subfamily Eptatretinae, indicating likely speciation from a single common ancestor within the area. E ptatretus poicilus sp. nov. is the sister species of E. cirrhatus, and E . cryptus sp. nov. is closely associated with the clade formed by these two species. Eptatretus goliath is most closely associated with Eptatretus minor Fernholm & Hubbs, 1981 (Gulf of Mexico), these two species basally diverging within New Zealand hagfishes. The endemic genus Neomyxine forms a well‐supported monophyletic group of as yet uncertain position within the phylogenetic tree. A key to the New Zealand hagfishes, fresh colour photographs, distribution maps, and in situ video recordings are presented. © 2015 The Linnean Society of London     

Description of four novel species of Xenorhabdus, family Enterobacteriaceae: Xenorhabdus budapestensis sp. nov., Xenorhabdus ehlersii sp. nov., Xenorhabdus innexi sp. nov., and Xenorhabdus szentirmaii sp. nov

The taxonomic affiliation was determined for four Xenorhabdus strains isolated from four Steinernema hosts from different countries. As compared to the five validly described Xenorhabdus species, i.e., X. nematophila, X. japonica, X. beddingii, X. bovienii and X. poinarii, these isolates represented novel species on the basis of 16S rRNA gene sequences and riboprint patterns, as well as by physiological and metabolic properties. They were named Xenorhabdus budapestensis sp. nov., type strain DSM 16342^T, isolated from Steinernema bicornutum; Xenorhabdus ehlersii sp. nov., type strain DSM 16337^T, isolated from Steinernema serratum; Xenorhabdus innexi sp. nov., type strain DSM 16336^T isolated from Steinernema scapterisci; and Xenorhabdus szentirmaii sp. nov., type strain DSM 16338^T, isolated from Steinernema rarum.     

A new threespine stickleback,Gasterosteus nipponicus sp. nov. (Teleostei: Gasterosteidae), from the Japan Sea region

Gasterosteus nipponicus sp. nov. is described from the holotype, 35 paratypes, and 60 additional specimens. The species differs from congeners in the following combination of characters: lateral plates complete, abruptly reducing in size above the anus, depth of lateral plate above the anus < 60 % that of the deepest plate; caudal keels thin, membranous. The new species is distributed in coastal Japan facing the Sea of Japan from Kyushu to Hokkaido Islands, along the Pacific coast of northern Japan from the Chiba Prefecture to Hokkaido, along the Sea of Okhotsk of Hokkaido, west to the southern and eastern coasts of Korean Peninsula, the Maritime Territory and north to Sakhalin Island, Russia.     

A new skink species (Oligosoma taumakae sp. nov.; Reptilia: Scincidae) from the Open Bay Islands,New Zealand

Abstract

We describe a new skink species (Oligosoma taumakae sp. nov.) from the Open Bay Islands, New Zealand. This species is diagnosed on the basis of several morphological characteristics, and its specific status is supported by mitochondrial sequence data (ND2, ND4). The new species appears to be most closely related to O. acrinasum, O. infra‐punctatum, O. otagense and O. waimatense. The new taxon appears to be rare and endemic to the island of Taumaka in the Open Bay Islands (off the west coast of the South Island). Predation by a flightless rail (weka, Gallirallus australis), native to New Zealand but introduced to the Open Bay Islands, is a major conservation concern.     

Classification of novel soil streptomycetes as Streptomyces aureus sp. nov., Streptomyces laceyi sp. nov. and Streptomyces sanglieri sp. nov

The taxonomic positions of soil isolates known as Streptomyces groups A, B and C were clarified. Comparative 16S rDNA sequence studies indicated that representatives of all three taxa formed distinct phyletic lines within the Streptomyces tree though the group A strains were shown to be related to Streptomyces griseus and associated validly described species. The taxonomic integrity of all three groups was highlighted by DNA:DNA relatedness and ribotype data though the group A strains encompassed a higher degree of genetic variation than the group B and C strains. In light of these and earlier phenotypic data it is proposed that Streptomyces groups A, B and C be given species status as Streptomyces sanglieri sp. nov., Streptomyces aureus sp. nov. and Streptomyces laceyi sp. nov., respectively. This revised version was published online in June 2006 with corrections to the Cover Date.     

Description of five novel thermophilic species of the genus Thermus: Thermus hydrothermalis sp. nov., Thermus neutrinimicus sp. nov., Thermus thalpophilus sp. nov., Thermus albus sp. nov., and Thermus altitudinis sp. nov., isolated from hot spring sediments

Biological denitrification is a significant process in nitrogen biogeochemical cycle of terrestrial geothermal environments, and Thermus species have been shown to be crucial heterotrophic denitrifier in hydrothermal system. Five Gram-stain negative, aerobic and rod-shaped thermophilic bacterial strains were isolated from hot spring sediments in Tibet, China. Phylogenetic analysis based on 16S rRNA gene and whole genome sequences indicated that these isolates should be assigned to the genus Thermus and were most closely related to Thermus caldifontis YIM 73026^T, and Thermus brockianus YS38^T. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the five strains and the type strains of the genus Thermus were lower than the threshold values (95% and 70%, respectively) recommended for bacterial species, which clearly distinguished the five isolates from other species of the genus Thermus and indicated that they represent independent species. Colonies are circular, convex, non-transparent. Cell growth occurred at 37–80 °C (optimum, 60–65 °C), pH 6.0–8.0 (optimum, pH 7.0) and with 0–2.0% (w/v) NaCl (optimum, 0–0.5%). Denitrification genes (narG, nirK, nirS, and norB genes) detected in their genomes indicated their potential function in nitrogen metabolism. The obtained results combined with those of morphological, physiological, and chemotaxonomic characteristics, including the menaquinones, polar lipids, and cellular fatty acids showed that the isolates are proposed as representing five novel species of the genus Thermus, which are proposed as Thermus hydrothermalis sp. nov. SYSU G00291^T, Thermus neutrinimicus sp. nov. SYSU G00388^T, Thermus thalpophilus sp. nov. SYSU G00506^T, Thermus albus sp. nov. SYSU G00608^T, Thermus altitudinis sp. nov. SYSU G00630^T.     

Sorex rohweri sp. nov. (Mammalia, Soricidae) from northwestern North America

Sorex rohweri sp. nov. is described on the basis of a series of specimens from the Olympic Peninsula and adjacent western regions of Washington State, USA, and southwestern British Columbia, Canada. It has been misidentified as Sorex cinereus Kerr, 1792, which occurs in the Cascade Range in west-central Washington, in coastal British Columbia, and regions farther to the northeast. The new species is distinguished from S. cinereus by numerous morphological characters: differences in craniodental dimensions; different location and form of the medial tines of the upper incisors; presence of patent postmandibular foramina; different intensity and distribution of dental pigmentation; and different form of the glans penis, along with other details. The combination of characters also separates it from sympatric species of Sorex. Phylogenetic inference of cytochrome b sequences from two specimens of the proposed new species shows them to be distinct from Sorex cinereus and from five sympatric Sorex species, supporting their designation as members of a new species.     

Icelinus pietschi sp. nov. and a rare species, Sigmistes smithi, from the southern Kuril Archipelago (Scorpaeniformes: Cottidae)

A new cottid, Icelinus pietschi sp. nov., and a rare species, Sigmistes smithi Schultz, were collected from intertidal zones in the southern Kuril Archipelago. Icelinus pietschi, represented by five specimens (34.8–42.2 mm SL) from Iturup Island, is distinguished from other species of Icelinus by having the dorsal scale rows terminating before the posteriormost base of the second dorsal fin, spines absent on the dorsal surface of the head, a single common opening of the terminal pores of the mandibular canal, a cirrus on the base of the nasal spine, and a slightly bifid uppermost preopercular spine without denticles dorsally. Six examples (36.8–42.9 mm SL) from Urup Island of Sigmistes smithi, previously known only rarely from the middle of the Aleutian Archipelago, constitute the first record of the species from the western North Pacific. Received: September 26, 1999 / Revised: May 25, 2000 / Accepted: August 29, 2000     

Sebdenia cerebriformis sp. nov. (Sebdeniaceae, Sebdeniales) from the south and western Pacific Ocean

A new species of red alga, Sebdenia cerebriformis N'Yeurt et Payri sp. nov. (Sebdeniaceae, Sebdeniales), is described from various localities in the south and western Pacific including Fiji, New Caledonia, the Solomon Islands, Vanuatu, and Indonesia (Java Sea). The new species is characterized by a ruffled thallus with multiple perennial stipitate holdfasts, large conspicuous inner cortical stellate cells, and a lax filamentous medulla.     

Neotapirissus gen. nov. of the tribe Issini (Hemiptera: Fulgoromorpha: Issidae) from Hainan Island

Neotapirissus gen. nov. , in the tribe Issini (Hemiptera: Fulgoromorpha: Issidae), is described from China, and type species Neotapirissus reticularis sp. nov. (China: Hainan) is described and illustrated. The female internal reproductive organs of the new species are also described and illustrated. The new genus is compared to the superficially similar genus Tapirissus Gnezdilov. The morphological diversity of the issids distributed in Hainan Island is discussed briefly.     

海南热带雨林腐木上两个无性型子囊菌酵母新种

用含木糖为唯一碳源和含葡萄糖及7.6%乙醇的两种富集培养基对采自海南热带雨林腐木样品中的酵母菌进行了分离培养。对分离出的酵母菌株进行的分子分类学研究表明,其中两株酵母菌X2WZ07-4和G2WZ06-1代表两个无性型子囊菌酵母新种。大亚基(26S)rRNA基因D1/D2域序列分析显示,与X2WZ07-4和G2WZ06-1亲缘关系最近的已知种分别为Candida cylindracea和C.llanquihuensis。在D1/D2域,X2WZ07-4与C.cylindracea模式菌株的碱基序列差异为2.5%;G2WZ06-1与C.llanquihuensis模式菌株的序列差异为3.9%,均远大于酵母菌种间在此区域的序列差异(～1%)。这两个新种分别被命名为拟柱形假丝酵母Candida pseudocylindracea sp.nov.(模式菌株:X2WZ07-4T=AS2.3788T=CBS10854T)和五指山假丝酵母Candida wuzhishanensis sp.nov.(模式菌株:G2WZ06-1T=AS2.3784T=CBS10850T)。