Which way the future?

Just as the principle of uniformitarianism is a fundamental tenet of science, the past experiences of the Field Studies Council provide an insight, and possibly a signpost, to the future. During the last thirty years, there have been significant changes in the numbers and categories of visitor attending the residential Centres. Expansion between 1956 and 1976 was almost entirely due to A-level courses in biology and geography but in the last ten years there has been considerable diversification. Adult amateur naturalists and younger, pre-A-level, school pupils are the obvious growth categories now. In the GCSE examination syllabuses, more than ever before, there is a commitment to ecology and to fieldwork (with the latter compulsory in all Geography syllabuses). Against such a background one might expect an optimistic prediction for the FSC's future. Unfortunately, and for a variety of reasons, many educationalists promote the view that ecology can be taught in the classroom and that first-hand observations of animals and plants in an aquarium provide sufficient practical work. There is a growing need for those who believe in the necessity for genuine field observation of the environment, in the environment, to voice their concern at the acceptance of any such alternatives/substitutes. Although environmental awareness has been heightened in recent years one might question whether there has been a concommitant raising of environmental understanding. It is increasingly important that, as the scale and scope of decisions about the environment expand, the level of understanding of those who make decisions (and of those who elect them) should also be raised. It is no longer politic nor wise to accept Montaigne's assertion, “that men are most apt to believe what they least understand”. I suggest that our target for the future be “Breadth with Excellence”. If the FSC can move toward that goal it can face the daunting task of trying to achieve “Environmental Understanding for AH”.     

Chromatin modifications and remodeling in plant abiotic stress responses

Sensing environmental changes and initiating a gene expression response are important for plants as sessile autotrophs. The ability of epigenetic status to alter rapidly and reversibly could be a key component to the flexibility of plant responses to the environment. The involvement of epigenetic mechanisms in the response to environmental cues and to different types of abiotic stresses has been documented. Different environmental stresses lead to altered methylation status of DNA as well as modifications of nucleosomal histones. Understanding how epigenetic mechanisms are involved in plant response to environmental stress is highly desirable, not just for a better understanding of molecular mechanisms of plant stress response but also for possible application in the genetic manipulation of plants. In this review, we highlight our current understanding of the epigenetic mechanisms of chromatin modifications and remodeling, with emphasis on the roles of specific modification enzymes and remodeling factors in plant abiotic stress responses. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress.     

Environmental carcinogenesis and biotechnology.

Numerous environmental and host factors, some of which are known and some unknown, contribute to cancer development. While data and studies abound, our current understanding of the relation between cancer and the environment is still very limited. Understanding environmental carcinogenesis is critical to its effective management. Biotechnology has revolutionalized the study of biological and biomedical sciences. This minireview provides an overview of environmental carcinogenesis with emphasis on the contributions and prospects of biotechnology in advancing an understanding of environmental carcinogenesis for its prevention and intervention.     

The evolution of intraspecific variation in social organization

Many species show intraspecific variation in their social organization (IVSO), which means the composition of their social groups can change between solitary living, pair living, or living in groups. Understanding IVSO is important because it demonstrates species resilience to environmental change and can help us to study ultimate and proximate reasons for group living by comparing solitary and group‐living individuals in a single species. It has long been realized that the environment plays a key role in explaining the occurrence of IVSO. IVSO is expected to have evolved in variable environments and can thus be a key adaptation to environmental change. It has previously been suggested that four different mechanisms relying on the environment exist that can lead to IVSO: environmental disrupters, genetic differentiation, developmental plasticity, and social flexibility. All four mechanisms depend on the environment such that focusing only on environmental factors alone cannot explain IVSO. Importantly, only three represent evolved mechanisms, while environmental disrupters leading to the death of important group members induce nonadaptive IVSO. Environmental disrupters can be expected to cause IVSO even in species where IVSO is also an adaptive response. Here, we focus on the questions of why IVSO occurs and why it evolved. To understand IVSO at the species level, it is important to conduct continuous long‐term studies to differentiate between nonadaptive and adaptive IVSO. We predict that IVSO evolves in environments that vary in important ecological variables, such as rainfall, food availability, and population density. IVSO might also depend on life history factors, especially longevity. IVSO is predicted to be more common in species with a short life span and that breed only for one breeding season, being selected to respond optimally to the prevailing environmental situation. Finally, we emphasize the importance of accounting for IVSO when studying social evolution, especially in comparative studies, as not every species can be assigned to one single form of social organization. For such comparative studies, it is important to use data based on the primary literature.     

How do species interactions affect species distribution models?

One of the most promising recent advances in biogeography has been the increased interest and understanding of species distribution models – estimates of the probability that a species is present given environmental data. Unfortunately, such analyses ignore many aspects of ecology, and so are difficult to interpret. In particular, we know that species interactions have a profound influence on distributions, but it is not usually possible to incorporate this knowledge into species distribution models. What is needed is a rigorous understanding of how unmeasured biotic interactions affect the inferences generated by species distribution models. To fill this gap, we develop a general mathematical approach that uses probability theory to determine how unmeasured biotic interactions affect inferences from species distribution models. Using this approach, we reanalyze one of the most important classes of mechanistic models of competition: models of consumer resource dynamics. We determine how measurements of one aspect of the environment – a single environmental variable – can be used to estimate the probability that an environment is suitable with species distribution models. We show that species distribution models, which ignore numerous facets of consumer resource dynamics such as the presence of a competitor or the dynamics of depletable resources, can furnish useful predictions for the probability that an environment is suitable in some circumstances. These results provide a rigorous link between complex mechanistic models of species interactions and species distribution models. In so doing they demonstrate that unmeasured biotic interactions can have strong and counterintuitive consequences on species distribution models.     

How corals made rocks through the ages

Hard, or stony, corals make rocks that can, on geological time scales, lead to the formation of massive reefs in shallow tropical and subtropical seas. In both historical and contemporary oceans, reef‐building corals retain information about the marine environment in their skeletons, which is an organic–inorganic composite material. The elemental and isotopic composition of their skeletons is frequently used to reconstruct the environmental history of Earth's oceans over time, including temperature, pH, and salinity. Interpretation of this information requires knowledge of how the organisms formed their skeletons. The basic mechanism of formation of calcium carbonate skeleton in stony corals has been studied for decades. While some researchers consider coral skeletons as mainly passive recorders of ocean conditions, it has become increasingly clear that biological processes play key roles in the biomineralization mechanism. Understanding the role of the animal in living stony coral biomineralization and how it evolved has profound implications for interpreting environmental signatures in fossil corals to understand past ocean conditions. Here we review historical hypotheses and discuss the present understanding of how corals evolved and how their skeletons changed over geological time. We specifically explain how biological processes, particularly those occurring at the subcellular level, critically control the formation of calcium carbonate structures. We examine the different models that address the current debate including the tissue–skeleton interface, skeletal organic matrix, and biomineralization pathways. Finally, we consider how understanding the biological control of coral biomineralization is critical to informing future models of coral vulnerability to inevitable global change, particularly increasing ocean acidification.     

Links between ecology and ecophilosophy,ethics and the requirements of environmental management

Abstract This paper concerns the ways that our philosophical attitudes to the environment can influence the appropriateness of methodologies for solving environmental problems. Sometimes a public perception is expressed that science takes scant regard of the concerns of the people affected. Is it possible for scientists and managers to respond to such concerns and still fulfil the logical and methodological rigour that their discipline demands? I believe we have to address fundamental issues of definitions and meaning before useful debate can occur among parties interested in environmental decision-making. Delving into the ideas behind our everyday practices of environmental management should promote re-evaluation of our beliefs, attitudes and concerns about nature. I examine environmental science from both ethical and managerial perspectives. I explore how our assumptions and attitudes might influence ecology, in particular issues raised by environmental impacts and conservation. The major points argued here are:

• 1 Any legal requirements of environmental investigations must be met, but perhaps we should act more in line with the spirit of legislation.
• 2 The managerial imperatives of environmental investigations need to be examined closely because of widely perceived problems with the use of science in impact assessment. We must change either our methods of assessment or the regulations and administration of environmental impact assessment (EIA).
• 3 Science is not paramount in the processes of environmental decision-making. We need to be aware of how psychosocial factors affect the ultimately political decisions about environmental problems.
• 4 Philosophy and ethics offer a range of perspectives that may benefit ecology. Scientists need to be aware of these just as they should be of their own leanings about how we treat nature.
• 5 Scientists need to translate social concerns or demands about the environment into properly defined scientific questions, and then study them as a matter of urgency.
• 6 Ecology needs to guide ecophilosophers and environmental ethicists as to how nature works, why we expect variability in ecosystems, what is naturalness, and other issues where a scientific understanding of nature has progressed beyond the point where these observers of ecology have so far taken inspiration.

     

神农架植物物种空间周转的驱动因素

揭示区域物种组成随环境梯度的变化规律, 掌握物种多样性的周转过程及其与环境的耦合关系, 是理解物种多样性形成的生态过程的核心, 也是生物多样性保护和保护地网络构建的科学基础。神农架是众多古老、孑遗和特有植物的关键栖息地, 也是全球落叶木本植物最丰富的地区之一。然而, 我们对影响神农架植物物种周转并形成镶嵌格局的驱动因素知之甚少。本研究基于对神农架长期系统的植物群落物种调查数据, 通过广义相异模型(GDM)和偏回归分析等方法, 分析了气候差异、地理距离、人为干扰等因素对神农架植物物种周转的驱动效应。结果表明, 随着年均温(MAT)、≥ 0℃积温、≥ 10℃积温差异和地理距离增大, 植物β多样性显著增加, 而年均降水量(MAP)、距离道路距离及森林破碎化等人为干扰因素对植物β多样性无显著影响。地理距离、气候差异和人为干扰分别解释了物种相异性变异的28.75%、34.56%和12.55%, 其交互作用解释了变异的8.52%。地理距离、气候差异和人为干扰共同解释了物种相异性变异的43.47%。综上, 地理距离和温度分异是驱动神农架植物物种空间周转过程的关键因素。保护海拔梯度上植被的垂直带谱及复杂多样的地貌异质性, 是维持神农架物种周转生态过程的关键, 也是神农架国家公园建设乃至鄂西北保护地网络构建应关注的重点。     

Spatio-temporal parameters for optical probing of neuronal activity

The challenge to understand the complex neuronal circuit functions in the mammalian brain has brought about a revolution in light-based neurotechnologies and optogenetic tools. However, while recent seminal works have shown excellent insights on the processing of basic functions such as sensory perception, memory, and navigation, understanding more complex brain functions is still unattainable with current technologies. We are just scratching the surface, both literally and figuratively. Yet, the path towards fully understanding the brain is not totally uncertain. Recent rapid technological advancements have allowed us to analyze the processing of signals within dendritic arborizations of single neurons and within neuronal circuits. Understanding the circuit dynamics in the brain requires a good appreciation of the spatial and temporal properties of neuronal activity. Here, we assess the spatio-temporal parameters of neuronal responses and match them with suitable light-based neurotechnologies as well as photochemical and optogenetic tools. We focus on the spatial range that includes dendrites and certain brain regions (e.g., cortex and hippocampus) that constitute neuronal circuits. We also review some temporal characteristics of some proteins and ion channels responsible for certain neuronal functions. With the aid of the photochemical and optogenetic markers, we can use light to visualize the circuit dynamics of a functioning brain. The challenge to understand how the brain works continue to excite scientists as research questions begin to link macroscopic and microscopic units of brain circuits.     

Neural basis of mathematical cognition

The human brain has remarkable capabilities for encoding and manipulating information about quantities. Understanding how the brain carries out such number and quantity processing is a problem not just for those interested in numerical cognition: it raises important questions that are relevant to understanding development, action, vision, language, executive function and cortical organisation. It is also a clear case of research into a core human psychological function having indisputable everyday relevance; hence the emphasis in early education on numeracy and later on mathematics.     

Pesticide alters oviposition site selection in gray treefrogs

Understanding the impacts of pesticides on non-target organisms is an important issue for conservation biology. Research into the environmental consequences of pesticides has largely focused on pesticide toxicity. We have less understanding of the nonlethal effects of pesticides, and the consequences of nonlethal effects for species and communities. For example, we know very little about whether pesticides alter habitat selection behavior. Understanding whether pesticides alter habitat selection is important because pesticide-induced shifts in habitat selection could either magnify or reduce the toxic effects of contaminants by funneling organisms into or directing them away from contaminated sites. Here we present four field experiments that examine the effect of the commercial pesticide Sevin and its active ingredient, carbaryl, on oviposition site selection by the gray treefrog (Hyla chrysoscelis). Our results show that uncontaminated pools consistently received 2-3 times more eggs than contaminated pools; that treefrogs appeared to respond to Sevin directly, not indirectly via its effects on the aquatic food web, and that this preference persisted across a range of temporal and spatial scales. Both Sevin and carbaryl per se reduced oviposition, while other volatile chemicals (e.g., our solvent control, acetone) had no effect. These findings suggest that in order to understanding the consequences of contaminants in aquatic systems we will need to consider not only toxicity, but also how contaminant effects on habitat selection alter the way organisms distribute themselves in the environment.     

Predicting community rank‐abundance distributions under current and future climates

Understanding influences of environmental change on biodiversity requires consideration of more than just species richness. Here we present a novel framework for understanding possible changes in species' abundance structures within communities under climate change. We demonstrate this using comprehensive survey and environmental data from 1748 woody plant communities across southeast Queensland, Australia, to model rank‐abundance distributions (RADs) under current and future climates. Under current conditions, the models predicted RADs consistent with the region's dominant vegetation types. We demonstrate that under a business as usual climate scenario, total abundance and richness may decline in subtropical rainforest and shrubby heath, and increase in dry sclerophyll forests. Despite these opposing trends, we predicted evenness in the distribution of abundances between species to increase in all vegetation types. By assessing the information rich, multidimensional RAD, we show that climate‐driven changes to community abundance structures will likely vary depending on the current composition and environmental context.     

市县级限制开发区环境功能区划研究——以河北省张家口市为例

限制开发地区是我国主体功能区划中划定的提供重要生态功能和农产品的地区,对其进行环境功能区划对于推动环境功能区划制度落地与实施,以及限制开发区的保护与发展有着重要意义。当前国家及省级的环境功能区划研究已经相对成熟,而市县尺度的限制开发地区环境功能区划相关研究较少。在总结现有环境功能区划研究方法的基础上,以河北省张家口市为例,探讨了市县级限制开发地区环境功能区划体系设计和技术方法,提出了以公里格网作为分析单元,结合县域行政边界,基于环境功能综合评价的结果,从自然生态安全、维护人群健康和区域环境支撑能力等3个方面,开展环境功能区划。基于该方法,将张家口市分为自然生态保留区、生态功能保持区、生态功能恢复区、农产品安全保障区、环境开发准入区、聚居发展维护区6类环境功能区,并根据各环境功能区的主要功能及生态环境特点提出相应的发展建议,以期为该区域管理提供可行的操作手段。本文提出的方法也可为其他限制开发地区的环境功能区划提供参考。     

In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA

Background  

Robustness is a fundamental property of biological systems and is defined as the ability to maintain stable functioning in the face of various perturbations. Understanding how robustness has evolved has become one of the most attractive areas of research for evolutionary biologists, as it is still unclear whether genetic robustness evolved as a direct consequence of natural selection, as an intrinsic property of adaptations, or as congruent correlate of environment robustness. Recent studies have demonstrated that the stem-loop structures of microRNA (miRNA) are tolerant to some structural changes and show thermodynamic stability. We therefore hypothesize that genetic robustness may evolve as a correlated side effect of the evolution for environmental robustness.     

Brain evolution by brain pathway duplication

Understanding the mechanisms of evolution of brain pathways for complex behaviours is still in its infancy. Making further advances requires a deeper understanding of brain homologies, novelties and analogies. It also requires an understanding of how adaptive genetic modifications lead to restructuring of the brain. Recent advances in genomic and molecular biology techniques applied to brain research have provided exciting insights into how complex behaviours are shaped by selection of novel brain pathways and functions of the nervous system. Here, we review and further develop some insights to a new hypothesis on one mechanism that may contribute to nervous system evolution, in particular by brain pathway duplication. Like gene duplication, we propose that whole brain pathways can duplicate and the duplicated pathway diverge to take on new functions. We suggest that one mechanism of brain pathway duplication could be through gene duplication, although other mechanisms are possible. We focus on brain pathways for vocal learning and spoken language in song-learning birds and humans as example systems. This view presents a new framework for future research in our understanding of brain evolution and novel behavioural traits.     

Environmental correlates of annual survival differ between two ecologically similar and congeneric owls

Understanding how survival is affected by the environment is essential to gain insight into population dynamics and the evolution of life‐history traits as well as to identify environmental selection pressures. However, we still have little understanding of the relative effect of different environmental factors and their interactions on demographic traits and population dynamics. Here we used two long‐term, individual‐based datasets on Tawny Owl Strix aluco (1981–2010) and Ural Owl S. uralensis (1986–2010) to undertake capture‐mark‐recapture analysis of annual survival of adult females in response to three biologically meaningful environmental variables and their two‐way interactions. Despite the similar ecology of these two species, their survival was associated with different and uncorrelated environmental drivers. The main correlate of Tawny Owl survival was an inverse association with snow depth (winter severity). For Ural Owl, high food (vole) abundance improved survival during years with deep snow, but was less important during years with little snow. In addition, Ural Owl survival was strongly density‐dependent, whereas Tawny Owl survival was not. Our findings advise caution in extrapolating demographic inferences from one species to another, even when they are very closely related and ecologically similar. Analyses including only one or few potential environmental drivers of a species' survival may lead to incomplete conclusions because survival may be affected by several factors and their interactions.     

Measuring Motivation in Swine: The Food-Metric Scale

Understanding how nonhuman animals such as swine respond to their environment and understanding how to provide them with a good quality of life involves using a range of experimental approaches. More and more, ethological researchers are turning to operant methods to answer some of these questions. Employing an operant such as a lever, researchers can assess how hard animals will work to get access to environmental resources: increased space or social contact. It is difficult, however, to determine how the effort made by the animals relates to the degree to which they need the resource and, in particular, how to interpret intermediate levels of responding. One approach to understanding the level of need is to compare it with familiar states of deprivation such as hunger. Food is an environmental resource known to range from low to high value depending on deprivation level. Depriving animals of a fixed proportion of their daily ad libitum intake allows the animals to demonstrate the levels of responding produced at satiation: 23 hr deprivation and a range of intermediate points. The resulting scale has both empirical and intuitive value and can help in understanding the value of various degrees of operant effort. Ultimately, this information will help in deciding which environmental conditions should be provided to swine as part of routine husbandry.     

Measuring motivation in swine: the food-metric scale

Understanding how nonhuman animals such as swine respond to their environment and understanding how to provide them with a good quality of life involves using a range of experimental approaches. More and more, ethological researchers are turning to operant methods to answer some of these questions. Employing an operant such as a lever, researchers can assess how hard animals will work to get access to environmental resources: increased space or social contact. It is difficult, however, to determine how the effort made by the animals relates to the degree to which they need the resource and, in particular, how to interpret intermediate levels of responding. One approach to understanding the level of need is to compare it with familiar states of deprivation such as hunger. Food is an environmental resource known to range from low to high value depending on deprivation level. Depriving animals of a fixed proportion of their daily ad libitum intake allows the animals to demonstrate the levels of responding produced at satiation: 23 hr deprivation and a range of intermediate points. The resulting scale has both empirical and intuitive value and can help in understanding the value of various degrees of operant effort. Ultimately, this information will help in deciding which environmental conditions should be provided to swine as part of routine husbandry.     

A strategy for research on psychological and social factors in hypertension

Stress-related research has thus far failed to provide an adequate understanding of hypertension and other psychosomatic ailments for three main reasons: First, there has been a continual failure to view stress as a relational phenomenon, that is, as a particular kind of transaction between person and environment. Second, there has been much confusion about the social, psychological and physiological levels of stress analysis; each is to some extent independent of the other, so that what happens at one level cannot stand for what happens at another. Third, the predominant research model has been structural and static. That is, the researcher looks at some environmental or personality characteristic, treating it as a stable property, and attempts to relate it to the risk of hypertension across persons or groups. Such an approach overlooks the key social, psychological and physiological mediating processes (e.g., social supports, cognitive appraisals, and coping) that are concurrent with and have causal significance in blood pressure elevation or change. Structural research models need to be supplemented with process-oriented ones in which the same persons are observed across various adaptational encounters and over time.