An Integrative Taxonomy of Amphibians of Nepal: An Updated Status and Distribution

Amphibians are declining worldwide.At the same time,each year many species of amphibians are described,indicating that biological diversity on Earth remains poorly understood.This is especially true for mountainous regions,such as the Himalayas,which are also regarded as a biodiversity hotspot.However,it is most likely that the current diversity of amphibians in Nepal is highly underestimated.Amphibian inventories by the past researchers primarily used phenotypic characters as the basis for species identification.However,the application of molecular systematics methods to taxonomic studies has successfully uncovered the taxonomic status of several cryptic taxa.This study used both molecular(16 S rDNA sequences)and morphological comparisons and estimated the diversity of amphibians from Nepal.This study reports the occurrence of 38 species of amphibians based on both molecular and morphological comparisons.Among them,three species were recorded for the first time in Nepal.This study also invalids the taxonomic status of Sphaerotheca paschima.This study highlights the importa nce of integrative taxonomic approaches that help to resolve the current taxonomic ambiguities of Nepalese amphibians.     

Taxonomy-based differences in feeding guilds of fish

It has been taken for granted that feeding guilds and behavior in animals are linked to the taxonomic relatedness of species,but empirical evidence supporting such relationship is virtually missing.To examine the importance of taxonomy on trophic ecology,I here present the first well-resolved dietary taxonomy analysis based on feeding guilds(predation,herbivory,and filtering)among families and genera within the fish order Perciformes.Taxonomic relatedness in feeding did not vary with ecosystem dimension(marine vs.freshwater).Although predation dominates among Perciformes fishes,this study shows that in most cases taxonomic units(family or genus)are composed by species with several feeding guilds.Related species are more similar in feeding compared with species that are taxonomically more distant demonstrating that there is a greater variation of feeding guilds within families than genera.Thus,there is no consistency in feeding guilds between family-and genus-level taxonomy.This study provides empirical support for the notion that genera are more informative than families,underlining that family-level taxonomy should be avoided to infer feeding habits of fish species at finer taxonomic resolution.Thus,the choice of taxonomic resolution(family or genus level)in ecological studies is key to avoid information loss and misleading results.I conclude that high-rank taxonomic units(i.e.,above the generic level)are not appropriate to test research hypotheses about the feeding of fish.     

Global patterns of taxonomic and phylogenetic diversity of flowering plants:Biodiversity hotspots and coldspotsOA

Species diversity of angiosperms(flowering plants) varies greatly among regions.Geographic patterns of variation in species diversity are shaped by the interplay of ecological and evolutionary processes.Here,using a comprehensive data set for regional angiosperm floras across the world,we show geographic patterns of taxonomic(species) diversity,phylogenetic diversity,phylogenetic dispersion,and phylogenetic deviation(i.e.,phylogenetic diversity after accounting for taxonomic diversity) across th...     

Synopsis of Leymus Hochst. （Triticeae： Poaceae）

Leymus is a genus in the Triticeae tribe, Poaceae. The taxa of this genus are allopolyploid species which possess the Ns and Xm genomes. According to cytological, cytogenetic and molecular genetic analyses, some species of Hystrix and Elymus ought to be transferred to this genus. A world revision of the genus Leymus is needed. In this paper we summarize experimental results, provide a key to sections, species and varieties, and list all the taxa we recognize in Leymus with their synonyms. This synopsis is a new taxonomic system to be used for the revision of Leymus.     

Insights into cryptic speciation of quillworts in ChinaOA

Cryptic species are commonly misidentified because of high morphological similarities to other species.One group of plants that may harbor large numbers of cryptic species is the quillworts(Iso?tes spp.),an ancient aquatic plant lineage.Although over 350 species of Iso?tes have been reported globally,only ten species have been recorded in China.The aim of this study is to better understand Iso?tes species diversity in China.For this purpose,we systematically explored the phylogeny and evolution ...     

The identity of Dinochloa species and enumeration of Melocalamus(Poaceae:Bambusoideae) in ChinaOA

Three woody bamboo species collected in Hainan,China in 1940 have been described as Dinochloa based on vegetative specimens.However,the identity of these species has long been in doubt,largely because the vegetative phase in species of Dinochloa is morphologically similar to that in species of Melocalamus,a climbing or scrambling bamboo genus of the paleotropical woody bamboos(Poaceae:Bambusoideae)that consists of about 15 species and one variety.To determine the phylogenetic affinity of the thr...     

Towards a coherent nomenclature of plant viruses

正The International Committee on Taxonomy of Viruses(ICTV)has the decree to set the rules for the classification and naming of viruses.The species is the lowest level considered in the taxonomic hierarchy.In general,virus species are named according to the structure"isolation hostsymptomsand the word‘virus’".A typical example is Tobacco mosaic virus[Genus:To-     

The influence of terrain age and altitude on the arthropod communities found on recently deglaciated terrain

Climate warming has been more pronounced in the Arctic than elsewhere, resulting in a recent rapid glacial retreat. Over 85% of the Almajallojekna glacier has disappeared over the last 115 years and it is one of the fastest retreating glaciers in Sweden. In 2011 and 2012, at 18 sites in the vicinity of the remaining glacier network, we sampled arthropods and related the species richness, abundance and proportion of herbivores to altitude （ranging from 824 to 1,524 m.a.s.1.） and the age of the site （ranging from 0 to 〉 115 years）. Temperature was measured at six sites and the average annual air temperature ranged from -3.7℃ to 1.1℃. In total, we recorded 3,705 arthropods from 117 species in nine different taxonomic groups. The most abundant and species-rich group was Coleoptera （1,381 individuals, 41 species） followed by Araneae （1,050 individuals, 15 species） and Macrolepidoptera （732 individuals, 17 species）. Only at lower altitudes did the abundance and species richness of arthropods increase with increasing age of the site. The results were consistent among the studied taxonomic groups and when controlling for sam- piing intensity using two different approaches. The proportion of herbivores decreased with increasing age of the site and with increasing altitude. Clearly, altitude appears more important than the age of the site and, at higher altitudes, abundance, species richness and herbivory are low [Current Zoology 60 （2）： 203-220, 2014].     

Evidence for the paternal mitochondrial DNA in the crucian carp-like fish lineage with hybrid origin

In terms of taxonomic status, common carp(Cyprinus carpio, Cyprininae) and crucian carp(Carassius auratus, Cyprininae) are different species; however, in this study, a newborn homodiploid crucian carp-like fish(2n=100)(2nNCRC) lineage(F1–F3) was established from the interspecific hybridization of female common carp(2n=100)×male blunt snout bream(Megalobrama amblycephala, Cultrinae, 2n=48). The phenotypes and genotypes of 2 n NCRC differed from those of its parents but were closely related to those of the existing diploid crucian carp. We further sequenced the whole mitochondrial(mt) genomes of the 2n NCRC lineage from F1 to F3. The paternal mt DNA fragments were stably embedded in the mt-genomes of F_1–F_3 generations of 2n NCRC to form chimeric DNA fragments. Along with this chimeric process, numerous base sites of F1–F3 generations of 2 n NCRC underwent mutations. Most of these mutation sites were consistent with the existing diploid crucian carp. Moreover, the mt DNA organization and nucleotide composition of 2n NCRC were more similar to those of the existing diploid crucian carp than those of the parents. The inheritable chimeric DNA fragments and mutant loci in the mt-genomes of different generations of 2nNCRC provided important evidence of the mt DNA change process in the newborn lineage derived from hybridization of different species. Our findings demonstrated for the first time that the paternal mt DNA were transmitted into the mt-genomes of homodiploid lineage, which provided new insights into the existence of paternal mt DNA in the mt DNA inheritance.     

Disentangling the role of management,vegetation structure,and plant quality for Orthoptera in lowland meadows

Seminatural grasslands provide habitats for various species and are important for biodiversity conservation. The understanding of the diverse responses of species and traits to different grassland managenient methods is therefore urgently needed. We disentangled the role of grassland management (fertilization and irrigation), vegetation structure (biomass, sward height) and plant quality (protein and fiber content) for Orthoptera communities in lowland hay meadows in Germany. We found vegetation structure to be the most important environmental category in explaining community structure of Orthoptera (species richness, total individuals, fiinctional diversity and species composition). Intensively used meadows (fertilized, irrigated, high plant biomass) were characterized by assemblages with few species, low functional diversity, and low conservation value. Thereby, the relatively moderate fertilizer inputs in our study system of up to -75 kg N/ha/year reduced functional diversity of Orthoptera, while this negative effect of fertilization was not detectable when solely considering taxonomic aspects. We found strong support for a prominent role of plant quality in shaping Orthoptera communities and especially the trait composition. Our findings demonstrate the usefulness of considering both taxonomic and functional comp on ents (functio nal diversity) in biodiversity research and we suggest a stronger involvement of plant quality measures in Orthoptera studies.     

Distribution and conservation of near threatened plants in ChinaOA

Plants classified as Near Threatened(NT) are at high risk of becoming threatened because of anthropogenic interference and climate change.Especially in conservation efforts,such species have however long been overlooked.Here,we obtained 98,419 precise occurrence points for 2442 NT plants in China,and used species richness,species complementarity,and weighted endemism that consider all,endemic and narrow-ranged species in order to identify the diversity hotspots of NT plants.Then we evaluated the...     

Pre-and post-pollination barriers between two exotic and five native Sagittaria species:Implications for species conservationOA

Anthropogenic introduction of species has resulted in a breakdown of geographical barriers and hybridization in previously allopatric species.Thus,examining hybridization proneness of exotic species contributes to revealing its potential threat.Moreover,reproductive barriers may be strengthened or weakened due to long-term geographical isolation for these newly sympatric species.However,few studies have evaluated multiple barriers between alien and native species.In this study,we quantified the ...     

Geographic patterns of taxonomic and phylogenetic β-diversity of aquatic angiosperms in ChinaOA

China covers a vast territory harbouring a large number of aquatic plants.Although there are many studies on the β-diversity of total,herbaceous or woody plants in China and elsewhere,few studies have focused on aquatic plants.Here,we analyse a comprehensive data set of 889 aquatic angiosperm species in China,and explore the geographic patterns and climatic correlates of total taxonomic and phylogeneticβ-diversity as well as their turnover and nestedness components.Our results show that geograph...     

Wind-dispersed seeds blur phylogeographic breaks:The complex evolutionary history of Populus lasiocarpa around the Sichuan BasinOA

The strength of phylogeographic breaks can vary among species in the same area despite being subject to the same geological and climate history due to differences in biological traits.Several important phylogeographic breaks exist around the Sichuan Basin in Southwest China but few studies have focused on wind-dispersed plants.Here,we investigated the phylogeographic patterns and the evolutionary history of Populus lasiocarpa,a wind-pollinated and wind-dispersed tree species with a circum-Sichua...     

New patterns of the tree beta diversity and its determinants in the largest savanna and wetland biomes of South AmericaOA

Clear and data-driven bioregionalizations can provide a framework to test hypotheses and base biodiversity conservation.Here we used occurrence and abundance data in combination with objective analytical methods to propose two bioregionalization schemes for tree species of the Cerrado and the Pantanal in South America.We also evaluated the contribution of three sets of determinants of the occurrence-and abundance-based subregions.We compiled data on tree species composition from 894local assembl...     

Intraspecific floral colour variation in three Pedicularis speciesOA

Flower constancy describes the phenomenon that pollinators tend to successively visit flowers of a single species during foraging, reducing reproductive interference in natural communities. The extent of flower constancy is largely determined by the floral traits of co-flowering species. Both higher inter-specific and lower intraspecific differences of floral traits should contribute to a higher level of flower constancy.However, previous studies mainly focused on interspecific difference, and t...     

中国高等植物编目信息系统进展(英文)

Biodiversity research increasingly relies on distribution networks for dealing with large-scale primary data.Up-to-date information on biodiversity is critical for the proper management and conservation of any area.The first step towards conservation should be to compile an authoritative species inventory or checklist.Catalogue of Life:Higher Plants in China(CNPC) is an ongoing biodiversity informatics project with the aim to integrate existing higher plants inventory data,and provide access via an internet based web service to public user and the scientific community.The CNPC,for the first time,provides integrated and authoritative taxonomic information on higher plant species found in China,and this database will be permanent,free and continously updated.Presently,a total of 34 377 species have been included in the database.Among of them,16 620 species are only found in China.Taxa are classified into 432 families and 3 941 genera.The CNPC will be an important source for scientists working on Chinese flora,and will play an important role in helping to achieve the targets set under the Global Strategy for Plant Conservation in the future.