Honoring a legend:Celebrating the life and legacy of Professor Heng LiOA

<正>Professor Heng Li (李恒,March 9,1929-January 12,2023) was a legendary plant taxonomist and phytogeographer at the Kunming Institute of Botany,Chinese Academy of Sciences (Fig.1).She made important contributions to our understanding of China’s flora,including the biodiversity and biogeography of Dulong Valley and the Gaoligong Mountains,as well as the vegetation of plateau lakes and wetlands in Southwest China.     

A Scientist Guerilla Fighter in the Frontiers of Bioinformatics——In Memory of Bailin Hao

正The well-known physicist and bioinformaticist, Professor,Academician of Chinese Academy of Sciences (the Academy),and the former director of Institute of Theoretical Physics (the Institute; 1990–1994), Mr. Bailin Hao, passed away early this year (March 7, 2018). In the cover of this issue of Genomics,ProteomicsBioinformatics (GPB), the Editorial Board has decided to publish his art-processed portrait in memory of     

Life Science:Innovation and prosperity—commemorating the 60~(th) anniversary of the Chinese Academy of Sciences

<正>In tandem with the birth and growth of the People's Republic of China (PRC),the Chinese Academy of Sciences (CAS) passed through six decades by the year of 2009.     

The identity of Dinochloa species and enumeration of Melocalamus(Poaceae:Bambusoideae) in ChinaOA

Three woody bamboo species collected in Hainan,China in 1940 have been described as Dinochloa based on vegetative specimens.However,the identity of these species has long been in doubt,largely because the vegetative phase in species of Dinochloa is morphologically similar to that in species of Melocalamus,a climbing or scrambling bamboo genus of the paleotropical woody bamboos(Poaceae:Bambusoideae)that consists of about 15 species and one variety.To determine the phylogenetic affinity of the thr...     

Plant diversity of Hyrcanian relict forests: An annotated checklist,chorology and threat categories of endemic and near endemic vascular plant speciesOA

In this paper a critical annotated checklist of 256 endemic and near endemic species belonging to 152 genera and 50 families of flowering plants known from Hyrcanian relict forests is presented. Distribution maps of taxa, elevational range, number of known records, chorotypes, life forms, IUCN threat categories and habitat types are also provided. The chorotypes are categorized into eight main patterns: 1) the Omni-Hyrcanian pattern(OH), 2) West Hyrcanian pattern(WH), 3) Manjil-Rudbar pattern(MR...     

Global patterns of taxonomic and phylogenetic diversity of flowering plants:Biodiversity hotspots and coldspotsOA

Species diversity of angiosperms(flowering plants) varies greatly among regions.Geographic patterns of variation in species diversity are shaped by the interplay of ecological and evolutionary processes.Here,using a comprehensive data set for regional angiosperm floras across the world,we show geographic patterns of taxonomic(species) diversity,phylogenetic diversity,phylogenetic dispersion,and phylogenetic deviation(i.e.,phylogenetic diversity after accounting for taxonomic diversity) across th...     

Cardiolipin is essential for higher proton translocation activity of reconstituted F_o

The Fo membrane domain of FoF1-ATPase complex had been purified from porcine heart mitochondria. SDS-PAGE with silver staining indicated that the purity of Fo was about 85% and the sample contained no subunits of F1-ATPase. The purified Fo was reconstituted into liposomes with different phospholipid composition, and the effect of CL (cardiolipin), PA (phosphatidic acid), PI (phosphatidylinositol) and PS (phosphatidylserine) on the H+ translocation activity of Fo was investigated. The results demonstrated that CL, PA and PI could promote the proton translocation of Fo with the order of CL>PA>>PI, while PS inhibited it. Meanwhile ADM (adriamycin) severely impaired the proton translocation activity of Fo vesicles containing CL, which suggested that CL's stimulation of the activity of reconstituted Fo might correlate with its non-bilayer propensity. After Fo was incorporated into the liposomes containing PE (phosphatidylethanolamine), DOPE (dioleoylphosphatidylethanolamine) as well as DEPE (dielaidoylphospha     

Taxonomic synopsis of Berberis(Berberidaceae)from the northern Hengduan mountains region in China,with descriptions of seven new speciesOA

Though Berberis(Berberidaceae) is widely distributed across the Eurasian landmass it is most diverse in the Himalaya-Hengduan Mountain(HHM) region.There are more than 200 species in China where it is one of the most common mountain shrubs.The study on the taxonomy and evolution of Berberis in this region can thus provide an important insight into the origin and diversification of its flora.A prerequisite to this is mapping and describing the various species of Berberis in the region-a task that ...     

Insights into cryptic speciation of quillworts in ChinaOA

Cryptic species are commonly misidentified because of high morphological similarities to other species.One group of plants that may harbor large numbers of cryptic species is the quillworts(Iso?tes spp.),an ancient aquatic plant lineage.Although over 350 species of Iso?tes have been reported globally,only ten species have been recorded in China.The aim of this study is to better understand Iso?tes species diversity in China.For this purpose,we systematically explored the phylogeny and evolution ...     

Coryphoid palms from the K-Pg boundary of central India and their biogeographical implications:Evidence from megafossil remainsOA

Ten palm leaf impressions are documented from the latest Maastrichtian(late Cretaceous) to early Danian(earliest Paleocene) sediments(K-Pg,c.66-64 Ma) of the Mandla Lobe of the Deccan Intertrappean Beds,Madhya Pradesh,central India.The palmate leaf shape along with a definite wellpreserved costa support their placement in the subfamily Coryphoideae of the family Arecaceae.We place all recovered palm leaf specimens in the fossil genus Sabalites,report seven species of coryphoid palms and describe...     

Historical biogeography and evolutionary diversification of Lilium(Liliaceae): New insights from plastome phylogenomicsOA

Here, we infer the historical biogeography and evolutionary diversification of the genus Lilium. For this purpose, we used the complete plastomes of 64 currently accepted species in the genus Lilium(14plastomes were newly sequenced) to recover the phylogenetic backbone of the genus and a timecalibrated phylogenetic framework to estimate biogeographical history scenarios and evolutionary diversification rates of Lilium. Our results suggest that ancient climatic changes and geological tectonic act...     

Geographic patterns of taxonomic and phylogenetic β-diversity of angiosperm genera in regional floras across the worldOA

Beta diversity(β-diversity) is the scalar between local(α) and regional(γ) diversity.Understanding geographic patterns of β-diversity is central to ecology,biogeography,and conservation biology.A full understanding of the origin and maintenance of geographic patterns of β-diversity requires exploring both taxonomic and phylogenetic β-diversity,as well as their respective turnover and nestedness components,and exploring phylogenetic p-diversity at different evolutionary depths.In this study,we ex...     

Patterns of phylogenetic relatedness of non-native plants across the introduction-naturalization-invasion continuum in ChinaOA

Human activities have caused the exchange of species among different parts of the world.When introduced species become naturalized and invasive,they may cause great negative impacts on the environment and human societies,and pose significant threats to biodiversity and ecosystem structure.Knowledge on phylogenetic relatedness between native and non-native species and among non-native species at different stages of species invasion may help for better understanding the drivers of species invasion...     

Mediation by calcium/calmodulin-dependent protein kinase II of suppression of GABA_A receptors by NMDA

Using nystatin-perforated whole-cell recording configuration, the modulatory effect of N-methyl-D-aspartate (NMDA) on γ-aminobutyric acid (GABA)-activated whole-cell currents was investigated in neurons freshly dissociated from the rat sacral dorsal commissural nucleus (SDCN). The results showed that: (i) NMDA suppressed GABA- and muscimol (Mus)-activated currents (IGABA and IMUS), respectively in the Mg2 -free external solution containing 1 μmol/L glycine at a holding potential (VH) of -40 mV in SDCN neurons. The selective NMDA receptor antagonist, D-2-amino-5-phosphonovaleric acid (APV, 100 μmol/L), inhibited the NMDA-evoked currents and blocked the NMDA-induced suppression of IGABA; (ii) when the neurons were incubated in a Ca2 -free bath or pre-loaded with a membrane-permeable Ca2 chelator, BAPTA AM (10 nmol/L), the inhibitory effect of NMDA on IGABA disappeared. Cd2 (10 μmol/L) or La3 (30 μmol/L), the non-selective blockers of voltage-dependent calcium channels, did not affect the suppressio     

Effect of environmental stresses and high hydrostatic pressure on the Antibiotic susceptibility of pathogenic Vibrio parahaemolyticus

The aim of the present study was to determine the effect of environmental stresses (temperature, pH, osmotic pressure, high hydrostatic pressure (HHP)) on the antibiotic susceptibility of 12 different pathogenic Vibrio parahaemolyticus isolates. Isolates were subjected to growth at (30 ℃and 37 ℃), an osmotic pressure of (1% and 6% NaCl), a media at pH (6.0 and 9.0) and three different HHP treatment (180, 250, 300 MPa). The minimal inhibitory concentrations (MICs) of tested antibiotics used against unstressed (control), stressed or post-stressed isolates were determined using the broth microdilution method. The study found that incubation under increased salt (6%), reduced salt (1%) and increased pH (9.0) conditions were commonly associated with increased antibiotic resistance. Incubation at 30 ℃ temperature, reduced pH (6.0) and HHP treatment were commonly associated with decreased antibiotic resistance. Besides, both ciprofloxacin and cefotaxime kept a constant MIC during almost all stress challenges. Thus our data demonstrate that exposure of V. parahaemolyticus to some stress conditions may contribute on the rapid development of antibiotic resistance in this food borne pathogen.     

Does ethylene play a role in thidiazuron-regulated somatic embryogenesis of geranium (Pelargonium × hortorum bailey) hypocotyl cultures?

Summary The accumulation of ethylene in headspace of hypocotyl cultures of geranium (Pelargonium × hortorum Bailey) and its possible role in thidiazuron-mediated somatic embryogenesis was investigated. The action of ethylene as determined by various ethylene synthesis and action inhibitors was varied. Silver nitrate (AgNo₃), aminoethoxyvinylglycine (AVG), and silver thiosulphate (STS) had no significant influence on the embryogenic response, while 1-methylcyclopropene (1-MCP) applied during the initial 3 d of induction or the expression phase, significantly increased the number of somatic embryos formed. Thidiazuron-treated tissues accumulated large quantities of ethylene within 6 h of culture, but the levels decreased after 12 h and reached very low levels after 3 d in culture. In the presence of acetylsalicylic acid (ASA), the levels of ethylene decreased by 20 to 50% during the first 48 h of culture. Analysis of endogenous auxin, cytokinins, and abscisic acid (ABA) indicated possible interactions of ethylene with other phytohormones during the induction of somatic embryos on geranium hypocotyl explants. Thidiazuron (10 μM) increased, while ASA decreased the levels of endogenous auxin, cytokinins, and abscisic acid during this period of induction.     

Evidence for two types of Aquilegia ecalcarata and its implications for adaptation to new environmentsOA

Spurs have played an important role in the radiation of the genus Aquilegia,but little is known about how the spurless state arose in A.ecalcarata.Here we aim to characterize the genetic divergence within A.ecalcarata and gain insights into the origin of this species.A total of 19 populations from A.ecalcarata and 23 populations from three of its closest relatives(Aquilegia kansuensis,Aquilegia rockii and Aquilegia yabeana) were sampled in this study.We sequenced fifteen nuclear gene fragments a...