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1.
The purpose of this study was to determine the concentrations and the horizontal distribution of faecal indicator bacteria (FIB) including Escherichia coli and Enterococcus sp. in the bottom sediments of the Bay of Vidy, City of Lausanne, Switzerland. A vertical distribution of FIB in sediments near the municipal wastewater treatment plant (WWTP) outlet was evaluated and their persistence in those sediments was monitored for a period of 90 days. High FIB levels were measured in the sediments sampled near the WWTP outlet pipe and the mouth of the Chamberonne River, at concentrations ranging between 105 and 107 CFU 100 g?1. FIB levels at 10 cm depth in the sediments near the WWTP outlet pipe ranged between 104 and 105 CFU 100 g?1, and were still detected in the top 6 cm after 90 days. Results of this study indicate that freshwater sediments of the Bay of Vidy constitute a reservoir of faecal indicator bacteria, which can persist in certain areas of the bay. Possible resuspension of FIB and pathogens may affect water quality and may increase health risks to sensitive populations during recreational activities. FIB survival in sediments for long periods is of considerable significance for the understanding of microbial pollution in water and for the management of risk at specific recreational coastal sites.  相似文献   

2.
《Mycological Research》2007,111(2):232-239
A genetic map was constructed previously from a cross between Magnaporthe oryzae isolates 84R-62B and Y93-245c-2, and genetic markers closely linked to the cultivar-specific avirulence (Avr) gene, AvrPik, were assigned to a 1.6 Mb small chromosome of 84R-62B that is absent from Y93-245c-2. In the present study, the 1.6 Mb chromosome was characterized by using contour-clamped homogeneous electric fields (CHEF) electrophoresis and hybridization analysis. CHEF electrophoresis analysis showed that the 1.6 Mb chromosome was inherited in Mendelian fashion, and co-segregated with AvrPik. Southern hybridization analysis revealed that the 1.6 Mb chromosome carried sequences only distributed to the supernumerary chromosome in M. oryzae isolates, as well as sequences corresponding to those in the supercontig 17 of chromosome 1 in the M. grisea database. Thus, we conclude that the Mendelian 1.6 Mb chromosome is a chimera containing sequences from chromosome 1 and from supernumerary chromosomes in M. oryzae.  相似文献   

3.
This study aimed to characterize eight accessions of Vicia narbonensis L. originated from different Mediterranean countries. The cytology of these species is rarely known despite the fact of its great socio-economical and ecological interest in these arid and semi-arid zones. This work aimed mainly to characterize the karyotype, morphological pod and seed traits of the species. Karyotypes of all accessions were similar to a diploid number of 2n = 2x = 14. All the accessions have submetacentric chromosomes with a secondary constriction attached to the long arm of pair VII close to the centromere. Variation in chromosome size was observed; it ranged from 5.86 μm to 7.62 μm. Indices of karyotype asymmetry were calculated as the total form percentage (TF%) and symmetric indices (Syi) which ranged from 33.75% to 35.42% and from 51.01% to 54.85%, respectively. The predominance of submetacentric chromosomes indicated that the karyotype is symmetrical and can be considered as primitive. However, the analysis of quantitative parameters measured on pods and seeds showed a significant variation between accessions. A relationship between centromeric index and the pod beak length was found. Estimation of phenotypic diversity using the Shannon diversity index (H′) showed that the length, the seed color and the number of seeds per pod are the most polymorphic traits with respectively, H = 0.92, 0.80 and 0.83. Cluster analysis of karyological, pod and seed traits showed four groups of accessions. This clustering is partially due to the geographical origin of the studied accessions. The variation in chromosome size, pod and seed traits could offer potentially valuable genetic resources for the improvement of V. narbonensis which is considered as neglected and underutilized crop species (NUCS).  相似文献   

4.
Passive co-treatment of municipal wastewater and synthetic acid mine drainage in a laboratory-scale, four-stage continuous flow reactor system was examined for changes in fecal indicator bacteria (FIB) counts. Raw municipal wastewater (MWW) from the City of Norman, Oklahoma was mixed at a 2:1 ratio with high-strength synthetic acid mine drainage and introduced to the system. The MWW contained varying concentrations of total coliforms (TC), fecal coliforms (FC), Escherichia coli, and fecal streptococci (FS). Initial concentrations ranged from 6 to 13, 0.6 to 6, 3 to 5, and 0.1 to 0.7 million cfu/100 mL, for TC, FC, E. coli, and FS, respectively. During the 6.6-day system residence time, a 100% reduction of all FIB was observed. However, FIB exhibited evidence of sub-lethal injury with slower colony formation rates on standard growth media after 81 h of retention. Extending standard incubation periods resulted in higher concentrations of all FIB in each treatment stage, except the final stage where only E. coli and TC counts increased. Although this co-treatment regime reduced FIB concentrations more effectively than conventional active or passive MWW treatment systems, further work can be done to optimize the efficiency of treating these wastes simultaneously.  相似文献   

5.
Ethanol-soluble components of corn (zein and xanthophylls) were separated and purified by size exclusion chromatography. Aqueous ethanol was used as the solvent for the entire process from extraction through chromatography. The effect of operating and design parameters, such as temperature, flow rate, loading mass, loading volume, column height and diameter, on productivity and resolution of the components was studied. Using a one-variable-at-a-time (OVAT) approach with 1 cm × 60 cm columns, optimum conditions were determined to be 40 °C temperature, 0.25 mL/min flow rate, volume loading of 22 mL corn extract, mass loading at 70 g/L of corn extract. All components could be resolved with base line separation with a 240 cm column length. Column diameter did not affect separation, implying linear scalability with constant flow distribution.  相似文献   

6.
《Reproductive biology》2014,14(3):190-199
Different environmental and lifestyle factors may interfere with the normal disjunction of sister chromatids/chromosomes during meiosis and may cause aneuploidy. The aim of the study was to examine the association between lifestyle factors and sperm aneuploidy. The study population consisted of 212 healthy men under 45 years of age attending an infertility clinic for diagnostic purposes and who had a normal semen concentration of 20–300 × 106 mL or slight oligozoospermia (semen concentration of 15–20 × 106/mL). All participants were interviewed and provided a semen sample. Sperm aneuploidy was assessed using multicolor FISH (DNA probes specific for chromosomes X, Y, 18, 13, 21). Results from the study suggest that lifestyle factors are related to sperm aneuploidy. A positive relationship was found between coffee drinking everyday and the lack of chromosome X or Y, as well as coffee drinking 1–6 times per week and additional chromosome 18. Wearing boxer shorts decrease the copy number changes in the whole chromosome 18, the number of additional chromosome 18 and the lack of chromosome 13. Additionally, obesity (BMI 30–40 kg/m2) was positively associated with additional chromosome 21 after being adjusted for potential confounders. These findings demonstrate that changing the men's lifestyle habits may contribute to reduction of the incidence of sperm aneuploidy. It is necessary that men continue to follow sensible health advice concerning excess weight, coffee drinking and wearing tight fitting underwear. As this is the first such study to examine different lifestyle factors and sperm aneuploidy, the results need to be confirmed on larger population.  相似文献   

7.
《Cytokine》2014,65(1):10-16
Activation of inflammatory pathways measured by serum inflammatory markers such as interleukin-18 (IL-18) and interleukin-1 receptor antagonist (IL-1ra) is strongly associated with the progression of chronic disease states in older adults. Given that these serum cytokine levels are in part a heritable trait, genetic variation may predict increased serum levels. Using the Cardiovascular Health Study and InCHIANTI cohorts, a genome-wide association study was performed to identify genetic variants that influence IL-18 and IL-1ra serum levels among older adults. Multiple linear regression models characterized the association between each SNP and log-transformed cytokine values. Tests for multiple independent signals within statistically significant loci were performed using haplotype analysis and regression models conditional on lead SNP in each region. Multiple SNPs were associated with these cytokines with genome-wide significance, including SNPs in the IL-18-BCO gene region of chromosome 2 for IL-18 (top SNP rs2250417, P = 1.9 × 10–32) and in the IL-1 gene family region of chromosome 2 for IL-1ra (rs6743376, P = 2.3 × 10–26). Haplotype tests and conditional linear regression models showed evidence of multiple independent signals in these regions. Serum IL-18 levels were also associated with a region on chromosome 2 containing the NLRC4 gene (rs12989936, P = 2.7 × 10–19). These data characterize multiple robust genetic signals that influence IL-18 and IL-1ra cytokine production. In particular, the signal for serum IL-18 located on chromosome two is novel and potentially important in inflammasome triggered chronic activation of inflammation in older adults. Replication in independent cohorts is an important next step, as well as molecular studies to better understand the role of NLRC4.  相似文献   

8.
Investigate reflex responses in muscles throughout the lower limb and low back during sudden inversion perturbations in individuals with and without Functional Ankle Instability (FAI) while walking. Forty subjects participated in the study. Surface electromyogram recordings were obtained from the fibularis (FIB), gluteus medius (GM), erector spinae (ES), and sternocleidomastoid (SCM) of the injured/matched side as well as the uninjured/matched contralateral side (FIB_CLS, GM_CLS, or ES_CLS). Latency and amplitude data were collected while subjects were walking on a custom-built perturbation walkway. The onset of the short-latency stretch reflex of the FIB was significantly later in the injured side of the FAI individuals when compared to the control group (P = 0.009). Both the short and long latency reflex amplitude was significantly smaller in the FIB muscle in the FAI group than in the control group (P < 0.008). No significant differences in latency or amplitude reflex responses were identified between the two groups in the GM, ES, FIB_CLS, GM_CLS, or ES_CLS (P > .05). Interpretation of these results indicate that during a dynamic perturbation task individuals with FAI demonstrate longer fibularis muscle latencies on the injured side while no significant changes in the proximal muscle groups. Additionally, short and long latency reflex amplitude was significantly decreased in FAI individuals.  相似文献   

9.
Campuloclinium macrocephalum (Less.) DC. is a perennial herb widely distributed in the New World, but introduced to South Africa, where it is commonly called “pompom weed”. This species is considered one of the most important weeds from Brazil and it has been included among the plant invaders of South Africa. Results of the meiotic and embryological analyses of six populations of C. macrocephalum are reported in this paper. The microsporogenesis analysis revealed five triploid (2n = 3x = 30) and one diploid (2n = 2x = 20) populations with a basic chromosome number x = 10. The diploid specimens showed regular meiotic behavior, but the triploid plants presented irregular chromosome pairing which result in the formation of univalents, bivalents and trivalents at diakinesis. In consequence, laggard chromosomes, unbalanced nuclei and micronuclei were observed in subsequent phases of meiosis. The embryological analysis showed that the triploid specimens of C. macrocephalum have embryo sac development from a nucellar cell (apospory), which indicates that these specimens are apomictic. Almost all cases of apomixis found in tribe Eupatorieae are diplosporous apomixis. Campuloclinium macrocephalum constitutes the second species of the tribe and the first of the genus with apospory as reproductive system. The aposporous apomixis combined with the presence of xylopodium would be two important factors responsible for the invasiveness of C. macrocephalum.  相似文献   

10.
High resolution melting is a new method of genotyping and variant scanning that can be seamlessly appended to PCR amplification. Limitations of genotyping by amplicon melting can be addressed by unlabeled probe or snapback primer analysis, all performed without labeled probes. High resolution melting can also be used to scan for rare sequence variants in large genes with multiple exons and is the focus of this article. With the simple addition of a heteroduplex-detecting dye before PCR, high resolution melting is performed without any additions, processing or separation steps. Heterozygous variants are identified by atypical melting curves of a different shape compared to wild-type homozygotes. Homozygous or hemizygous variants are detected by prior mixing with wild-type DNA. Design, optimization, and performance considerations for high resolution scanning assays are presented for rapid turnaround of gene scanning. Design concerns include primer selection and predicting melting profiles in silico. Optimization includes temperature gradient selection of the annealing temperature, random population screening for common variants, and batch preparation of primer plates with robotically deposited and dried primer pairs. Performance includes rapid DNA preparation, PCR, and scanning by high resolution melting that require, in total, only 3 h when no variants are present. When variants are detected, they can be identified in an additional 3 h by rapid cycle sequencing and capillary electrophoresis. For each step in the protocol, a general overview of principles is provided, followed by an in depth analysis of one example, scanning of CYBB, the gene that is mutated in X-linked chronic granulomatous disease.  相似文献   

11.
The holocentric structure promotes chromosome rearrangements by fission, fusion, translocation, and inversion, which have been thought to promote differentiation and speciation. The Carex laevigata group (Cyperaceae) comprises four species: two restricted endemics from the western Mediterranean (Carex camposii, 2n = 72, and Carex paulo-vargasii, 2n = 74–75), and two more widespread species, found mostly in Western Europe (C. laevigata, 2n = 69–84, and Carex binervis, 2n = 72–74). We tested the selection for chromosome number by climatic variables by controlling for the non-independence of the data using generalized linear mixed model (GLMM). We obtained chromosome counts as well as DNA sequences for the 5′ trnK intron and the trnV-ndhC intergenic spacer in the chloroplast genome from 181 individuals from 53 populations representing these four species. We also climatically characterized the sites where the 53 populations were found using the WorldClim database. Our results show that the best predictor of chromosome number variation is the climatic environment rather than neutral evolutionary processes like founder events and migration patterns. These results support the adaptive value of the holocentric chromosomes and their role in promoting differentiation and eventually speciation.  相似文献   

12.
BackgroundLepidopteran insect cells withstand multifold higher radiation doses and suffer far less DNA damage despite carrying numerous structural/functional homologies with mammalian cells. Since DNA–histone interactions significantly influence radiation-induced DNA damage, we investigated the role of histones in insect cell radioresistance.MethodsModified comet assay was used to assess the γ-radiation-induced DNA damage following serial histone depletion by varied salt concentrations. Acid–Urea–Triton (AUT) gel analysis combined with in silico predictions was used to compare mammalian and insect histones and acetylation status while HDAC activity was assessed/modified for studying the latter's role in radioresistance. Cell death was measured by morphological analysis and flow cytometry.ResultsHigh-salt extraction pattern from Sf9 nuclei suggested stronger DNA–histone affinity as the two core histones H2A/H2B could be extracted at much higher (2 M) concentration as compared to 1.2 M NaCl in mammalian (AA8) cells. Electrophoretic mobility of unirradiated Sf9 cells remained unaltered at all salt concentrations (0.14 M–2 M NaCl), and radiation-induced DNA damage increased only by 2 M-NaCl pre-treatment. In silico analysis confirmed excellent conservation of Lepidopteran H2A/H2B sequence with human histones including comparable N-terminal lysine residues, yet these had ~ 60% lower acetylation. Importantly, insect cells showed ~ 70% higher histone deacetylase activity whose inhibition by Trichostatin-A reversed hypo-acetylation state and caused significant radiosensitization, thereby confirming the protective contribution of reduced acetylation.ConclusionOur study reveals that the hypo-acetylated state of well-conserved core histones, maintained by considerable HDAC activity, contributes significantly in Lepidopteran radioresistance.General SignificanceThis investigation shows constitutively high activity of HDACs as a potential radioprotective mechanism existing in insect cells.  相似文献   

13.
The objective of this study was to evaluate the effect of sex composition of the group of lambs before puberty on later sexual performance in Awassi ram lambs. Thirteen Awassi ram lambs of the same age were raised in either all-male group (n = 7) or in a group mixed with females (n = 6) from weaning to puberty. Blood samples, body weights (BW) and scrotal circumferences (SC) of ram lambs were recorded between eight and 10 months of age. Sexual performance testing was performed at 9 months of age by individually exposing ram lambs to oestrous females on five occasions. Body weight and SC were greater (P < 0.01) in the all-male compared with the mixed group. Plasma testosterone concentrations were not influenced (P > 0.05) by treatment. Plasma testosterone concentrations were significantly correlated (P  0.05) with BW (r = 0.3) and SC (r = 0.4). No treatment effects were detected regarding bouts of leg-kicking. Bouts of anogenital sniffing, the frequency of mount attempts and mounting frequency were greater (P < 0.05) in the all-male group. Even though the frequency of raising the fat tail of females was similar between the two treatments, the mixed group tended to be (P = 0.08) more efficient in doing so than the all-male group (higher tail raising/mount). Results of the current study indicate that mixing groups of ram and ewe lambs before puberty may be insufficient to improve later sexual performance of ram lambs.  相似文献   

14.
15.
《Aquatic Botany》2005,83(4):289-295
Treatment of Lemna minor L. roots with 15 μM Pb2+ supplied as Pb(NO3)2 in 50-fold diluted Wang medium caused a progressive reduction in mitotic activity in the root tip. The percentage of dividing nuclei after 1, 6, 12 and 12 h of lead treatment was 6.25, 4.4, 3.4 and 0.3, respectively as compared to 7.1–7.7% in the control. After 6 h of lead treatment the number of cells in metaphase and anaphase was reduced by four- and nine-fold, respectively and after 12 h these phases were not detected. There were 3- and 10-fold fewer cells in telophase after 6 and 24 h, while those in prophase were reduced only in the 24 h treatment (a 30-fold reduction). These effects were associated with an increase in the number of cells exhibiting disturbances including lagging chromosomes, chromosome bridges, micronuclei, and nuclei with more condensed chromatin. The formation of micronuclei in root cells of L. minor cells at a very low dose of lead indicates that roots of this aquatic plant may be more sensitive to lead than those of terrestrial plants.  相似文献   

16.
Accurate measurement of cartilage deformation in loaded cadaver hip joints could be a valuable tool to answer clinically relevant research questions. MRI is a promising tool, but its use requires an understanding of cartilage deformation and recovery properties in the intact hip. Our objective was to answer the following questions: (1) How long does it take for hip cartilage to reach a deformed steady-state thickness distribution under simulated physiological load, and how much does the cartilage deform? (2) How long does it take for hip cartilage to return to the original cartilage thickness distribution once the load is removed?MethodsFive human hip specimens were axially loaded to 1980 N in a 7 T MR scanner and scanned every 15 min throughout loading. One specimen was scanned every hour throughout recovery from load. One repeatability specimen was loaded and scanned every day for 4 days. Hip cartilage was segmented as a single unit and thickness was measured radially.ResultsThe hip cartilage reached a steady-state thickness distribution after 225 min of load, and 16.5 h of recovery. Mean strain after 225 min of load was 30.9%. The repeatability specimen showed an average day-to-day change in mean cartilage thickness of 0.10 mm over 4 days of data collection. The amount of deformation (0.96 mm) was far greater than the image resolution (0.11 mm) and error due to repeatability (0.10 mm).ConclusionUsing an ex vivo model, this method has potential for assessing changes in hip cartilage strain due to injury or surgical intervention.  相似文献   

17.
The presence of reciprocal chromosome translocations (RCTs), as well as sperm chromatin disturbances, is known to exert negative influence on male fertility. The aim of this study was to identify an association between chromosome structural rearrangements in male RCT carriers and sperm seminological parameters (concentration, motility, morphology), chromatin status (fragmentation and maturity), meiotic segregation pattern and observed chromosomal hyperhaploidy. Sperm samples originated from ten male RCT carriers with reproductive failure/success. TUNEL assay (DNA fragmentation) and chromomycin A3 (CMA3)/aniline blue (AB) staining (chromatin maturity) were used to analyze sperm chromatin status while fluorescent in situ hybridization (FISH) was applied to observe meiotic segregation patterns and hyperhaploidy in spermatozoa. We found that the mean level of sperm DNA fragmentation in the RCT carrier group (18.0 ± 11.9%) was significantly higher (p = 0.0006) than the mean of the control group (7.5 ± 4.3%). There was no correlation observed between sperm DNA fragmentation levels (5.6–38.0%) and the frequency of genetically normal/balanced gametes (34.3–62.4%), sperm seminological quality or revealed reproductive failure. In contrast, a correlation between the frequencies of genetically normal/balanced spermatozoa and of gametes with mature chromatin was observed (CMA3: R = 0.4524, p = 0.2604; AB: R = 0.5238, p = 0.1827). A statistically significant increase in the hyperhaploidy level of selected chromosomes in all analyzed RCT carriers was documented but was not correlated to sperm seminology or fertility status. Further evaluation and additional assays toward sperm chromatin quality assessment in RCT carriers is suggested to explain the complexity of genomic structural rearrangements and its possible relevance to reproductive success or failure.  相似文献   

18.
To evaluate the effect of storage conditions of blood on the direct relationship between radiation-induced chromosome aberrations and apoptosis in human peripheral blood lymphocytes, whole blood was irradiated with 3 Gy X-rays. Directly after irradiation, a sample of blood was analyzed for chromosome damage and proliferation index, after phytohaemagglutinin stimulation and incubation at 37 °C for 56 h. Blood samples were stored for 48 h at 4 and 20 °C with or without phytohaemagglutinin and analyzed for cell viability and apoptosis at 0, 24 and 48 h storage time. After 48 h of storage, unstimulated cultures were stimulated to proliferate. These samples and cultures stimulated immediately before storage were incubated at 37 °C for 56 h and analyzed for chromosome damage and proliferation index. Metaphases were examined for the presence of dicentrics, excess acentrics, and rings. Storage at 20 °C without phytohaemagglutinin for 48 h increases significantly the yield of apoptosis and decreases significantly the yield of dicentrics. During 48 h of storage time the presence of phytohaemagglutinin and the temperature of 4 °C protected the irradiated lymphocytes from apoptosis allowing accurate estimation of the real yield of radiation-induced chromosome damage. Therefore these blood-storage conditions enable analysis in metaphase and may offer some advantages for biodosimetry of absorbed radiation dose.  相似文献   

19.
Previously, we described the discovery of potent ferulic acid-based histone deacetylase inhibitors (HDACIs) with halogeno-acetanilide as novel surface recognition moiety (SRM). In order to improve the affinity and activity of these HDACIs, twenty seven isoferulic acid derivatives were described herein. The majority of title compounds displayed potent HDAC inhibitory activity. In particular, IF5 and IF6 exhibited significant enzymatic inhibitory activities, with IC50 values of 0.73 ± 0.08 and 0.57 ± 0.16 μM, respectively. Furthermore, these compounds showed moderate antiproliferative activity against human cancer cells. Especially, IF6 displayed promising profile as an antitumor candidate with IC50 value of 3.91 ± 0.97 μM against HeLa cells. The results indicated that these isoferulic acid derivatives could serve as promising lead compounds for further optimization.  相似文献   

20.
《Small Ruminant Research》2010,88(1-3):17-26
An ear marginal fibroblast cell bank was established from the Jining Black Grey (JBG) goat using attachment culture and freezing biotechniques. This bank included 32 ear samples (15 males and 17 females) and has stocks of 168 cryogenically preserved vials, each vial contained 4.0 × 106 cells per milliliter. The cells of the bank that were checked for the quality and the biological characteristics showed a typical fibroblast morphology when they cultured in vitro. The growth curve consisted of a growth curve consisting of a latent phase, logarithmic growth phase and stationary phase, cell population doubling time (PDT) of 48 h. The chromosome analysis showed that the frequency of cells having the diploid number of chromosomes (60) was 98.65 ± 2.89%, and no microbe contamination (bacteria, epiphyte, virus or mycoplasma) was detected. In addition, lactate dehydrogenase (LDH) and malate dehydrogenase (MDH) zymography indicated that this cell bank was free of cross-contamination. At 24, 48 and 72 h after transfection, the expression efficiency of pEGFP-C1, pEGFP-N3, pEYFP-N1, pECFP-N1, pECFP-mito and pDsRed1-N1 were between 11.8% and 56.3%. The fluorescence could be observed well-distributed in cytoplasm and nucleus except for some cryptomere vesicles at 24 h after transfection. These newly established cell lines meet all the quality control standards established by the American Type Culture Collection. We have employed a new method for conserving the genetic resources of an important and endangered animal breed. The fibroblast bank that we have established from the JBG goat also provides an invaluable material resource for future studies that will utilize molecular and cell biology applications.  相似文献   

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