Large-scale bleaching of corals on the Great Barrier Reef

 The Great Barrier Reef (GBR) experienced its most intensive and extensive coral bleaching event on record in early 1998. Mild bleaching commenced in late January and intensified by late February/early March 1998. Broad-scale aerial surveys conducted of 654 reefs (∼23% of reefs on the GBR) in March and April 1998, showed that 87% of inshore reefs were bleached at least to some extent (>1% of coral cover) compared to 28% of offshore (mid- and outer-shelf) reefs. Of inshore reefs 67% had high levels of bleaching (>10% of coral) and 25% of inshore reefs had extreme levels of bleaching (>60% of coral). Fewer offshore reefs (14%) showed high levels of bleaching while none showed extreme levels of bleaching. Ground-truth surveys of 23 reefs, which experienced bleaching in intensities ranging from none to extreme, showed that the aerial survey data are likely to be underestimates of the true extent and intensity of bleaching on the GBR. The primary cause of this bleaching event is likely to be elevated sea temperature and solar radiation, exacerbated by lowered salinity on inshore and some offshore reefs in the central GBR. Accepted: 30 July 1998     

Atmospheric dimethysulphide production from corals in the Great Barrier Reef and links to solar radiation, climate and coral bleaching

Coral zooxanthellae contain high concentrations of dimethylsulphoniopropionate (DMSP), the precursor of dimethylsulphide (DMS), an aerosol substance that could affect cloud cover, solar radiation and ocean temperatures. Acropora intermedia a dominant staghorn coral in the Indo-Pacific region, contain some of the highest concentrations of DMSP reported in the literature but no studies have shown that corals produce atmospheric DMS in situ and thus could potentially participate in sea surface temperature (SST) regulation over reefs; or how production varies during coral bleaching. We show that A. intermedia from the Great Barrier Reef (GBR) produces significant amounts of atmospheric DMS, in chamber experiments, indicating that coral reefs in this region could contribute to an “ocean thermostat” similar to that described for the western Pacific warm pool, where significantly fewer coral reefs have bleached during the last 25?years because of a cloud-SST feedback. However, when Acropora intermedia was stressed with higher light levels and seawater temperatures DMSP production, an indicator of zooxanthellae expulsion, increased markedly in the chamber, whilst atmospheric DMS emissions almost completely shut down. These results suggest that during increased light levels and seawater temperatures in the GBR coral shut-down atmospheric DMS aerosol production, potentially increasing solar radiation levels over reefs and exacerbating coral bleaching.     

Climate change and coral reefs: different effects in two high-latitude areas (Arabian Gulf,South Africa)

The findings in this paper show that Arabian Gulf (Abu Dhabi, Dubai, Sharjah) corals have already been measurably affected by climate change and further negative impacts are expected. Corals in South Africa have been only weakly impacted and are expected to persist in this likely refuge. The Arabian Gulf has recently experienced high-frequency recurrences of temperature-related bleaching (1996, 1998, 2002). First evidence may suggest that bleaching patterns in corals changed due to phenotypic adaptation after two strong bleaching events in rapid succession, because Acropora, which during the 1996 and 1998 events always bleached first and suffered heaviest mortality, bleached less than all other corals in 2002 at Sir Abu Nuair and recovered at Jebel Ali and Ras Hasyan. In South Africa, reef corals largely escaped the mass mortalities observed across the tropics in the late 1990s, although bleaching has also increased since 1999. These reefs are protected by local small-scale upwelling events in summer that, if they occur at the right time, keep temperatures below bleaching levels. Both areas, the Arabian Gulf and South Africa, have rich coral faunas but little to no recent reef-framework production. It is possible that many reefs worldwide may have similar dynamics in the future, if the changed climate (recurrence of temperature anomalies, changes in aragonite saturation state, etc.) suppresses sustained reef building at least temporarily. Global climate models predict the possibility of significant environmental changes, including increases in atmospheric temperature, sea-surface temperature (SST), and sea level. Monsoon and El Niño Southeastern Oscillation (ENSO) patterns might change, but climate models are not conclusive. Sea-level rise by up to 0.88 m is expected to be a problem in some low-lying areas, like the southern Arabian Gulf. Ocean aragonite saturation state is predicted to fall throughout the ocean but may not change reef dynamics in the two study areas.     

The impact of ENSO on coral heat stress in the western equatorial Pacific

The Coral Triangle encompasses an extensive region of coral reefs in the western tropical Pacific with marine resources that support millions of people. As in all other reef regions, coral reefs in the Coral Triangle have been impacted by anomalously high ocean temperature. The vast majority of bleaching observations to date have been associated with the 1998 La Niña phase of ENSO. To understand the significance of ENSO and other climatic oscillations to heat stress in the Coral Triangle, we use a 5‐km resolution Regional Ocean Model System for the Coral Triangle (CT‐ROMS) to study ocean temperature thresholds and variability for the 1960–2007 historical period. Heat‐stress events are more frequent during La Niña events, but occur under all climatic conditions, reflecting an overall warming trend since the 1970s. Mean sea surface temperature (SST) in the region increased an average of ~ 0.1 °C per decade over the time period, but with considerable spatial variability. The spatial patterns of SST and heat stress across the Coral Triangle reflect the complex bathymetry and oceanography. The patterns did not change significantly over time or with shifts in ENSO. Several regions experienced little to no heat stress over the entire period. Of particular interest to marine conservation are regions where there are few records of coral bleaching despite the presence of significant heat stress, such as in the Banda Sea. Although this may be due to under‐reporting of bleaching events, it may also be due to physical factors such as mixing and cloudiness, or biological factors that reduce sensitivity to heat stress.     

Severity of the 1998 and 2005 bleaching events in Venezuela, southern Caribbean

This study describes the severity of the 2005 bleaching event at 15 reef sites across Venezuela and compares the 1998 and 2005 bleaching events at one of them. During August and September 2005, bleached corals were first observed on oceanic reefs rather than coastal reefs, affecting 1 to 4% of coral colonies in the community (3 reef sites, n = 736 colonies). At that time, however, no bleached corals were recorded along the eastern coast of Venezuela, an area of seasonal upwelling (3 reefs, n = 181 colonies). On coastal reefs, bleaching started in October but highest levels were reached in November 2005 and January 2006, when 16% of corals were affected among a wide range of taxa (e.g. scleractinians, octocorals, Millepora and zoanthids). In the Acropora habitats of Los Roques (an oceanic reef),no bleached was recorded in 2005 (four sites,n = 643 colonies). At Cayo Sombrero, a coastal reef site, bleaching was less severe in 1998 than in 2005 (9% of the coral colonies involving 2 species vs. 26% involving 23 species, respectively). Our results indicate that bleaching was more severe in 2005 than in 1998 on Venezuelan reefs; however, no mass mortality was observed in either of these two events.     

The effects of light-induced reduction of the photosystem II reaction center

Accumulation of reduced pheophytin a (Pheo-D1) in photosystem II reaction center (PSII RC) under illumination at low redox potential is accompanied by changes in absorbance and circular dichroism spectra. The temperature dependences of these spectral changes have the potential to distinguish between changes caused by the excitonic interaction and temperature-dependent processes. We observed a conformational change in the PSII RC protein part and changes in the spatial positions of the PSII RC pigments of the active D1 branch upon reduction of Pheo-D1 only in the case of high temperature (298 K) dynamics. The resulting absorption difference spectra of PSII RC models equilibrated at temperatures of 77 K and 298 K were highly consistent with our previous experiments in which light-induced bleaching of the PSII RC absorbance spectrum was observable only at 298 K. These results support our previous hypothesis that Pheo-D1 does not interact excitonically with the other chlorins of the PSII RC, since the reduced form of Pheo-D1 causes absorption spectra bleaching only due to temperature-dependent processes. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

Long-term records of coral calcification across the central Great Barrier Reef: assessing the impacts of river runoff and climate change

Calcification rates are reported for 41 long-lived Porites corals from 7 reefs, in an inshore to offshore transect across the central Great Barrier Reef (GBR). Over multi-decadal timescales, corals in the mid-shelf (1947–2008) and outer reef (1952–2004) regions of the GBR exhibit a significant increase in calcification of 10.9 ± 1.1 % (1.4 ± 0.2 % per decade; ±1 SE) and 11.1 ± 3.9 % (2.1 ± 0.8 % per decade), respectively, while inner-shelf (1930–2008), reefs show a decline of 4.6 ± 1.3 % (0.6 ± 0.2 % per decade). This long-term decline in calcification for the inner GBR is attributed to the persistent ongoing effects of high sediment/nutrients loads from wet season river discharges, compounded by the effects of thermal stress, especially during the 1998 bleaching event. For the recent period (1990–2008), our data show recovery from the 1998 bleaching event, with no significant trend in the rates of calcification (1.1 ± 2.0 %) for the inner reefs, while corals from the mid-shelf central GBR show a decline of 3.3 ± 0.9 %. These results are in marked contrast to the extreme reef-wide declines of 14.2 % reported by De’ath et al. (2009) for the period of 1990–2005. The De’ath et al. (2009) results are, however, found to be compromised by the inclusion of incomplete final years, duplicated records, together with a bias toward inshore reefs strongly affected by the 1998 bleaching. Our new findings nevertheless continue to raise concerns, with the inner-shelf reefs continuing to show long-term declines in calcification consistent with increased disturbance from land-based effects. In contrast, the more ‘pristine’ mid- and outer-shelf reefs appear to be undergoing a transition from increasing to decreasing rates of calcification, possibly reflecting the effects of CO₂-driven climate change. Our study highlights the importance of properly undertaken, regular assessments of coral calcification that are representative of the distinctive cross-shelf environments and discriminate between local disturbances and the global impacts of climate change and ocean acidification.     

Tropical cyclone cooling combats region‐wide coral bleaching

Coral bleaching has become more frequent and widespread as a result of rising sea surface temperature (SST). During a regional scale SST anomaly, reef exposure to thermal stress is patchy in part due to physical factors that reduce SST to provide thermal refuge. Tropical cyclones (TCs – hurricanes, typhoons) can induce temperature drops at spatial scales comparable to that of the SST anomaly itself. Such cyclone cooling can mitigate bleaching across broad areas when well‐timed and appropriately located, yet the spatial and temporal prevalence of this phenomenon has not been quantified. Here, satellite SST and historical TC data are used to reconstruct cool wakes (n=46) across the Caribbean during two active TC seasons (2005 and 2010) where high thermal stress was widespread. Upon comparison of these datasets with thermal stress data from Coral Reef Watch and published accounts of bleaching, it is evident that TC cooling reduced thermal stress at a region‐wide scale. The results show that during a mass bleaching event, TC cooling reduced thermal stress below critical levels to potentially mitigate bleaching at some reefs, and interrupted natural warming cycles to slow the build‐up of thermal stress at others. Furthermore, reconstructed TC wave damage zones suggest that it was rare for more reef area to be damaged by waves than was cooled (only 12% of TCs). Extending the time series back to 1985 (n = 314), we estimate that for the recent period of enhanced TC activity (1995–2010), the annual probability that cooling and thermal stress co‐occur is as high as 31% at some reefs. Quantifying such probabilities across the other tropical regions where both coral reefs and TCs exist is vital for improving our understanding of how reef exposure to rising SSTs may vary, and contributes to a basis for targeting reef conservation.     

Three lines of evidence to link outbreaks of the crown-of-thorns seastar Acanthaster planci to the release of larval food limitation

Population outbreaks of the coral-eating crown-of-thorns seastar, Acanthaster planci, continue to kill more coral on Indo-Pacific coral reefs than other disturbances, but the causes of these outbreaks have not been resolved. In this study, we combine (1) results from laboratory experiments where larvae were reared on natural phytoplankton, (2) large-scale and long-term field data of river floods, chlorophyll concentrations and A. planci outbreaks on the Great Barrier Reef (GBR), and (3) results from A. planci—coral population model simulations that investigated the relationship between the frequency of outbreaks and larval food availability. The experiments show that the odds of A. planci larvae completing development increases ~8-fold with every doubling of chlorophyll concentrations up to 3 μg l⁻¹. Field data and the population model show that river floods and regional differences in phytoplankton availability are strongly related to spatial and temporal patterns in A. planci outbreaks on the GBR. The model also shows that, given plausible historic increases in river nutrient loads over the last 200 years, the frequency of A. planci outbreaks on the GBR has likely increased from one in 50–80 years to one every 15 years, and that current coral cover of reefs in the central GBR may be 30–40% of its potential value. This study adds new and strong empirical support to the hypothesis that primary A. planci outbreaks are predominantly controlled by phytoplankton availability.     

History,ecology and trends for artificial reefs of the Ligurian sea,Italy

From 1970 to the present 10 artificial reef sites have been developed in coastal waters of the Ligurian Sea, Italy. They range from Ventimiglia, in the west, to La Spezia, in the east, with the largest and best known reef complex being located in the Gulf of Genoa at Loano and consisting of 2,745 m³, about 5,200 t of material and covering a surface of 350 ha. Design and construction practices have advanced from an initial, unsuccessful effort that used automobile bodies (now banned) to current use of custom-designed concrete modules deployed systematically. Funding for reef construction has come since 1983. The earliest aim of reefs was as a physical barrier to protect habitats against illegal otter trawl fishing. Newer objectives include habitat restoration, enhancement of biodiversity and fishing catch, and research to test materials and designs for physical and ecological performance. Reefs also functions as environmental observation stations, with the invasive species Caulerpa taxifolia (Vahl) C. Agardh, being recorded on the reef at Alassio. For some Artificial Reefs (Ars), benthic organisms and fishes, settlement, biomass and development of community are recorded. In Loano AR, immersed in 1986, more than 150 algae species are recorded, more than 200 benthic animal species and 78 species (87 taxa) of fishes. Fifty-six species (61 taxa) of fishes are recorded by visual census, the others are caught only by trammel net and long line. Trammel catches at Loano are on average about 2.32 kg/100 m net. Comparisons among ARs reveal that age of the reef, location and presence of seagrass meadows are crucial for success. An indication of functional equivalence between ARs and natural rocky reefs is seen if both fish and sessile macrobenthos are compared. After 34 years of investigation a database comprising at least one hundred scientific articles based on research programs of up to 15 years, and other unpublished reports, provides information to guide future planning of reefs. On the basis of acquired experience, some management advice is suggested and the best design for the basic module in the Ligurian sea is described. The role of ARs, providing protection of coastal environment against the illegal otter trawling, nursery, microhabitat and food supply, while increasing biodiversity, biomass of benthos and fishes, and facilities for ecotourism, is outlined.

Choosing the appropriate spatial resolution for monitoring coral bleaching events using remote sensing

Bleached corals provide a strong optical signal that suggests that remote sensing investigations of major bleaching events are feasible using airborne or satellite sensors. However, patchy coral cover, varying intensities of bleaching, and water depths are likely to limit the application of remote sensing techniques in monitoring and mapping coral bleaching. Today, satellite multispectral sensors routinely provide images of reefs from 4 m (Ikonos) to 30 m resolution (Landsat); however, the adequacy of these sensors for monitoring and mapping bleaching events remains unclear. To clarify these issues, scanned aerial photographs acquired during the 1998 bleaching event over the Great Barrier Reef (Australia) were analyzed at various spatial resolutions, from 10 cm to 5 m. We found that the accuracy of mapping bleaching is highly sensitive to spatial resolution. Highest accuracy was obtained at 10 cm resolution for detection of totally bleached colonies. At 1 m resolution, as much as 50% of the 10-cm resolution signal is lost, though the spatial patterns remain correctly described. Partially bleached (pale) corals are difficult to detect even in aerial surveys, leading to an underestimation of overall bleaching levels (total and partial bleaching) in aerial photos compared to in-situ surveys. If data volume and processing time are limiting factors, local variance analysis suggests that the optimal resolution necessary to capture spatial patterns of bleaching is in the range 40-80 cm.     

Reproductive cycle and gonad development of the Northern Argentinean <Emphasis Type="Italic">Mesodesma mactroides</Emphasis> (Bivalvia: Mesodesmatidae)

The reproductive cycle and gonad development of the yellow clam Mesodesma mactroides was studied over a period of 24 months (January 2005–December 2006) at the Argentinean sandy beach Santa Teresita. Histological examination of gonadal tissue revealed that sex ratios did not significantly deviate from the proportion of 1:1 and no case of hermaphroditism was found. The reproductive cycle of M. mactroides followed an annual cyclicality, which was significantly correlated to monthly mean sea surface temperatures (SST). Oocytes showed highest abundance in winter, indicating a process of gonadal development and sexual maturation. The mean oocyte size decreased significantly during spring. Modal oocyte sizes decreased significantly during winter and late spring of each year, suggesting spawning events. The condition index was not useful in describing the annual reproductive cycle of M. mactroides. Ash-free, shell-free dry mass was chosen to detect the condition of the specimens, and this significantly correlated with monthly mean SST and the gametogenic cycle. Annual recruitment patterns during summer–autumn indicated a 3-month-long planktonic phase of M. mactroides. The reproduction cycle and gonad development of M. mactroides showed only weak differences between data from the present study and those collected 40 years ago.

Farm Households and Land Use in a Core Conservation Zone of the Maya Biosphere Reserve,Guatemala

This paper employs cross-tabular analysis, and multivariate and logistic regression to explore demographic, political-economic, socioeconomic, and ecological patterns of farm households and land use outcomes in an emergent agricultural frontier: the Sierra de Lacandón National Park (SLNP)-a core conservation zone of the Maya Biosphere Reserve (MBR), Petén, Guatemala. Data were obtained from a 1998 probability sample of 241 farm households, the first large detailed household land use survey in Guatemala’s Selva Maya-the largest lowland tropical forest in Central America. Virtually all settler households were poor maize farmers who colonized the SLNP in search of land for subsistence. While they faced similar ecological and economic conditions, land use strategies and patterns of forest clearing varied with demographic, household, and farm characteristics. Findings support and refute elements from previous frontier land use theory and offer policy implications for conservation and development initiatives in the Maya Forest specifically, and in tropical agricultural frontiers in general.

Role of host genetics and heat‐tolerant algal symbionts in sustaining populations of the endangered coral Orbicella faveolata in the Florida Keys with ocean warming

Identifying which factors lead to coral bleaching resistance is a priority given the global decline of coral reefs with ocean warming. During the second year of back‐to‐back bleaching events in the Florida Keys in 2014 and 2015, we characterized key environmental and biological factors associated with bleaching resilience in the threatened reef‐building coral Orbicella faveolata. Ten reefs (five inshore, five offshore, 179 corals total) were sampled during bleaching (September 2015) and recovery (May 2016). Corals were genotyped with 2bRAD and profiled for algal symbiont abundance and type. O. faveolata at the inshore sites, despite higher temperatures, demonstrated significantly higher bleaching resistance and better recovery compared to offshore. The thermotolerant Durusdinium trenchii (formerly Symbiondinium trenchii) was the dominant endosymbiont type region‐wide during initial (78.0% of corals sampled) and final (77.2%) sampling; >90% of the nonbleached corals were dominated by D. trenchii. 2bRAD host genotyping found no genetic structure among reefs, but inshore sites showed a high level of clonality. While none of the measured environmental parameters were correlated with bleaching, 71% of variation in bleaching resistance and 73% of variation in the proportion of D. trenchii was attributable to differences between genets, highlighting the leading role of genetics in shaping natural bleaching patterns. Notably, D. trenchii was rarely dominant in O. faveolata from the Florida Keys in previous studies, even during bleaching. The region‐wide high abundance of D. trenchii was likely driven by repeated bleaching associated with the two warmest years on record for the Florida Keys (2014 and 2015). On inshore reefs in the Upper Florida Keys, O. faveolata was most abundant, had the highest bleaching resistance, and contained the most corals dominated by D. trenchii, illustrating a causal link between heat tolerance and ecosystem resilience with global change.     

Taxonomic patterns of bleaching within a South African coral assemblage

In 1998, the Indian Ocean coral reefs suffered a severe and extensive mass bleaching event. The thermal tolerances of corals were exceeded and their photosynthetic symbionts (zooxanthellae) lost. Mortalities of up to 90% were recorded on the reefs of Seychelles, Maldives, Kenya and Tanzania. South African coral reefs were among the few that largely escaped the 1998 mass bleaching event, but may be threatened in the future if global warming increases. This study assessed the extent of coral bleaching and partial recovery at Sodwana Bay, South Africa during 2000 and 2001. Bleaching levels in this study varied over the course of a year, which suggested that seasonally varying parameters such as sea temperature were the most likely cause of bleaching. Bleaching levels were highest at the shallowest site. However, these bleaching levels were very low in comparison with those of reefs elsewhere in the Indian Ocean. The greater volume of water over the relatively deeper reefs of Sodwana Bay may have protected the reefs from severe bleaching. Field measurements on the three reefs indicated that, although the reefs at Sodwana Bay are still healthy, bleaching increased from <1% in 1998 to 5–10% in 2002. Bleaching occurred in 26 coral genera. The Alcyonacea were highly susceptible to bleaching, especially Sarcophyton sp. Among the hard corals, Montipora spp. were the species most susceptible to bleaching. The sensitivity of these genera to early and slight increases in temperature suggests that they can forewarn of a possible greater bleaching event. In contrast, the coral genera Turbinaria and Stylophora were most resistant to bleaching.     

Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave

Repeat marine heat wave‐induced mass coral bleaching has decimated reefs in Seychelles for 35 years, but how coral‐associated microbial diversity (microalgal endosymbionts of the family Symbiodiniaceae and bacterial communities) potentially underpins broad‐scale bleaching dynamics remains unknown. We assessed microbiome composition during the 2016 heat wave peak at two contrasting reef sites (clear vs. turbid) in Seychelles, for key coral species considered bleaching sensitive (Acropora muricata, Acropora gemmifera) or tolerant (Porites lutea, Coelastrea aspera). For all species and sites, we sampled bleached versus unbleached colonies to examine how microbiomes align with heat stress susceptibility. Over 30% of all corals bleached in 2016, half of which were from Acropora sp. and Pocillopora sp. mass bleaching that largely transitioned to mortality by 2017. Symbiodiniaceae ITS2‐sequencing revealed that the two Acropora sp. and P. lutea generally associated with C3z/C3 and C15 types, respectively, whereas C. aspera exhibited a plastic association with multiple D types and two C3z types. 16S rRNA gene sequencing revealed that bacterial communities were coral host‐specific, largely through differences in the most abundant families, Hahellaceae (comprising Endozoicomonas), Rhodospirillaceae, and Rhodobacteraceae. Both Acropora sp. exhibited lower bacterial diversity, species richness, and community evenness compared to more bleaching‐resistant P. lutea and C. aspera. Different bleaching susceptibility among coral species was thus consistent with distinct microbiome community profiles. These profiles were conserved across bleached and unbleached colonies of all coral species. As this pattern could also reflect a parallel response of the microbiome to environmental changes, the detailed functional associations will need to be determined in future studies. Further understanding such microbiome‐environmental interactions is likely critical to target more effective management within oceanically isolated reefs of Seychelles.     

Corals escape bleaching in regions that recently and historically experienced frequent thermal stress

The response of coral-reef ecosystems to contemporary thermal stress may be in part a consequence of recent or historical sea-surface temperature (SST) variability. To test this hypothesis, we examined whether: (i) there was a relationship between the historical frequency of SST variability and stress experienced during the most recent thermal-stress events (in 1998 and 2005–2006) and (ii) coral reefs that historically experienced frequent thermal anomalies were less likely to experience coral bleaching during these recent thermal-stress events. Examination of nine detrended coral δ¹⁸O and Sr/Ca anomaly records revealed a high- (5.7-year) and low-frequency (>54-year) mode of SST variability. There was a positive relationship between the historical frequency of SST anomalies and recent thermal stress; sites historically dominated by the high-frequency mode experienced greater thermal stress than other sites during both events, and showed extensive coral bleaching in 1998. Nonetheless, in 2005–2006, corals at sites dominated by high-frequency variability showed reduced bleaching, despite experiencing high thermal stress. This bleaching resistance was most likely a consequence of rapid directional selection that followed the extreme thermal event of 1998. However, the benefits of regional resistance could come at the considerable cost of shifts in coral species composition.     

Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef

Connectivity underpins the persistence and recovery of marine ecosystems. The Great Barrier Reef (GBR) is the world's largest coral reef ecosystem and managed by an extensive network of no‐take zones; however, information about connectivity was not available to optimize the network's configuration. We use multivariate analyses, Bayesian clustering algorithms and assignment tests of the largest population genetic data set for any organism on the GBR to date (Acropora tenuis, >2500 colonies; >50 reefs, genotyped for ten microsatellite loci) to demonstrate highly congruent patterns of connectivity between this common broadcast spawning reef‐building coral and its congener Acropora millepora (~950 colonies; 20 reefs, genotyped for 12 microsatellite loci). For both species, there is a genetic divide at around 19°S latitude, most probably reflecting allopatric differentiation during the Pleistocene. GBR reefs north of 19°S are essentially panmictic whereas southern reefs are genetically distinct with higher levels of genetic diversity and population structure, most notably genetic subdivision between inshore and offshore reefs south of 19°S. These broadly congruent patterns of higher genetic diversities found on southern GBR reefs most likely represent the accumulation of alleles via the southward flowing East Australia Current. In addition, signatures of genetic admixture between the Coral Sea and outer‐shelf reefs in the northern, central and southern GBR provide evidence of recent gene flow. Our connectivity results are consistent with predictions from recently published larval dispersal models for broadcast spawning corals on the GBR, thereby providing robust connectivity information about the dominant reef‐building genus Acropora for coral reef managers.     

Spatial and temporal genetic structure of Symbiodinium populations within a common reef‐building coral on the Great Barrier Reef

The dinoflagellate photosymbiont Symbiodinium plays a fundamental role in defining the physiological tolerances of coral holobionts, but little is known about the dynamics of these endosymbiotic populations on coral reefs. Sparse data indicate that Symbiodinium populations show limited spatial connectivity; however, no studies have investigated temporal dynamics for in hospite Symbiodinium populations following significant mortality and recruitment events in coral populations. We investigated the combined influences of spatial isolation and disturbance on the population dynamics of the generalist Symbiodinium type C2 (ITS1 rDNA) hosted by the scleractinian coral Acropora millepora in the central Great Barrier Reef. Using eight microsatellite markers, we genotyped Symbiodinium in a total of 401 coral colonies, which were sampled from seven sites across a 12‐year period including during flood plume–induced coral bleaching. Genetic differentiation of Symbiodinium was greatest within sites, explaining 70–86% of the total genetic variation. An additional 9–27% of variation was explained by significant differentiation of populations among sites separated by 0.4–13 km, which is consistent with low levels of dispersal via water movement and historical disturbance regimes. Sampling year accounted for 6–7% of total genetic variation and was related to significant coral mortality following severe bleaching in 1998 and a cyclone in 2006. Only 3% of the total genetic variation was related to coral bleaching status, reflecting generally small (8%) reductions in allelic diversity within bleached corals. This reduction probably reflected a loss of genotypes in hospite during bleaching, although no site‐wide changes in genetic diversity were observed. Combined, our results indicate the importance of disturbance regimes acting together with limited oceanographic transport to determine the genetic composition of Symbiodinium types within reefs.