SPECIATION IN NORTH AMERICAN CHICKADEES: I. PATTERNS OF mtDNA GENETIC DIVERGENCE

We surveyed mitochondrial DNA haplotype divergence within and between populations of six species of North American chickadees (Parus, Subgenus Poecile) with the following results. (1) Genotype diversities (range 0.3 to 0.7) and low nucleotide diversities (range 3 to 27 × 10^?4) within populations were typical of known vertebrates. (2) The two widespread, northern species (atricapillus and hudsonicus) exhibit little mtDNA genetic differentiation throughout their previously glaciated continental distributions, most likely because of recent, postglacial range expansions. (3) Newfoundland populations of atricapillus and maritime province (Newfoundland plus Nova Scotia) populations of hudsonicus have distinct mtDNA haplotypes which differ from continental haplotypes by single restriction site changes. (4) Haplotypes of the southeastern U.S. species P. carolinensis divide into eastern and western sets which have diverged by three percent. This heretofore unrecognized, divided population structure may correspond to the Tombigbee River/ Mobile Bay disjunction known in some other vertebrate taxa. (5) Allopatric populations of the southwestern species sclateri and gambeli exhibit divergences of one and three percent respectively. (6) Prevailing interspecific divergence distances of three to seven percent suggest speciation early in the Pleistocene rather than during late (e.g., Wisconsin) glaciations. (7) Phylogenetic analyses suggest that North American taxa include two clades, hudsonicus-rufescens-sclateri versus carolinensis-atricapillus-gambeli and that carolinensis and atricapillus are not sister species.     

Character displacement in the midst of background evolution in island populations of Anolis lizards: A spatiotemporal perspective

Negative interactions between species can generate divergent selection that causes character displacement. However, other processes cause similar divergence. We use spatial and temporal replication across island populations of Anolis lizards to assess the importance of negative interactions in driving trait shifts. Previous work showed that the establishment of Anolis sagrei on islands drove resident Anolis carolinensis to perch higher and evolve larger toepads. To further test the interaction's causality and predictability, we resurveyed a subset of islands nine years later. Anolis sagrei had established on one island between surveys. We found that A. carolinensis on this island now perch higher and have larger toepads. However, toepad morphology change on this island was not distinct from shifts on six other islands whose Anolis community composition had not changed. Thus, the presence of A. sagrei only partly explains A. carolinensis trait variation across space and time. We also found that A. carolinensis on islands with previously established A. sagrei now perch higher than a decade ago, and that current A. carolinensis perch height is correlated with A. sagrei density. Our results suggest that character displacement likely interacts with other evolutionary processes in this system, and that temporal data are key to detecting such interactions.     

Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis)

Anolis carolinensis is an emerging model species and the sole member of its genus native to the United States. Considerable morphological and physiological variation has been described in the species, and the recent sequencing of its genome makes it an attractive system for studies of genome variation. To inform future studies of molecular and phenotypic variation within A. carolinensis, a rigorous account of intraspecific population structure and relatedness is needed. Here, we present the most extensive phylogeographic study of this species to date. Phylogenetic analyses of mitochondrial DNA sequence data support the previous hypothesis of a western Cuban origin of the species. We found five well‐supported, geographically distinct mitochondrial haplotype clades throughout the southeastern United States. Most Florida populations fall into one of three divergent clades, whereas the vast majority of populations outside Florida belong to a single, shallowly diverged clade. Genetic boundaries do not correspond to major rivers, but may reflect effects of Pleistocene glaciation events and the Appalachian Mountains on migration and expansion of the species. Phylogeographic signal should be examined using nuclear loci to complement these findings.     

The synaptonemal complexes of Meloidogyne: relationship of structure and evolution of parthenogenesis

The synaptonemal complexes of three amphimictic (meiotic) strains of Meloidogyne are examined in this study. M. microtyla (n = 19) has a tripartite synaptonemal complex (SC) comprised of two lateral elements and one central region with a distinct central element. The central region of the SC in both M. carolinensis (n = 18) and M. megatyla (n = 18) lack a distinct central element. The evolutionary history is different in the strains since M. microtyla has arisen by a mechanism involving an increase in chromosome number (from an ancestral stock of n = 18) while both M. carolinensis and M. megatyla have maintained the number of chromosomes of the ancestral stock. The structure of the SCs of the latter two strains are identical to the structure of the SC of the meiotic parthenogenetic M. hapla. Thus, the pachytene karyotype of M. carolinensis was reconstructed to establish the pairing pattern and identify any changes that may be related to the different morphology of the SC in an amphimictic stock. Although recombination nodules (RN) have been observed in the parthenogenetic M. hapla, none of the three amphimictic strains had any SC associated structures that resembled a RN.     

A year round comparative study on the population structures of pelagic Ostracoda in Admiralty Bay (Southern Ocean)

The population structures of the three dominant planktonic halocyprid Ostracoda species in Admiralty Bay (King George Island, Antarctic Peninsula) were followed throughout the course of a year in zooplankton samples collected once every three weeks from February 1993 to January 1994. The sampling was conducted at two stations: A in the central part of Admiralty Bay (400–0 m) and B in the entrance to the Bay from the Bransfield Strait (400–0 m). The samples were taken using a WP-2 net (square mouth opening of 0.196 m² and 200 μm mesh) hauled vertically from the bottom to the surface. Changes in the age structures of the populations of three species Alacia belgicae, Alacia hettacra and Metaconchoecia isocheira were tracked. Their population structures differed. The changes in A. belgicae suggested that it reproduces year-round, whereas both A. hettacra and M. isocheira probably complete their life cycles within a year. The cycle in A. hettacra probably starts earlier in the year than that of M. isocheira. Populations of A. belgicae and M. isocheira were more advanced in their development at station A, than at station B, but A. hettacra was more advanced at the latter. Advection appears to play a role in maintaining the populations in the shelf waters. Comparisons between populations in the shelf area (Admiralty Bay) and in open ocean waters (Croker Passage) show that the M. isocheira population is older in shelf water whereas the age structure of A. belgicae population is not influenced by the locality.     

Diversification in wild populations of the model organism Anolis carolinensis: A genome‐wide phylogeographic investigation

The green anole (Anolis carolinensis) is a lizard widespread throughout the southeastern United States and is a model organism for the study of reproductive behavior, physiology, neural biology, and genomics. Previous phylogeographic studies of A. carolinensis using mitochondrial DNA and small numbers of nuclear loci identified conflicting and poorly supported relationships among geographically structured clades; these inconsistencies preclude confident use of A. carolinensis evolutionary history in association with morphological, physiological, or reproductive biology studies among sampling localities and necessitate increased effort to resolve evolutionary relationships among natural populations. Here, we used anchored hybrid enrichment of hundreds of genetic markers across the genome of A. carolinensis and identified five strongly supported phylogeographic groups. Using multiple analyses, we produced a fully resolved species tree, investigated relative support for each lineage across all gene trees, and identified mito‐nuclear discordance when comparing our results to previous studies. We found fixed differences in only one clade—southern Florida restricted to the Everglades region—while most polymorphisms were shared between lineages. The southern Florida group likely diverged from other populations during the Pliocene, with all other diversification during the Pleistocene. Multiple lines of support, including phylogenetic relationships, a latitudinal gradient in genetic diversity, and relatively more stable long‐term population sizes in southern phylogeographic groups, indicate that diversification in A. carolinensis occurred northward from southern Florida.     

First reports of Grania (Clitellata: Enchytraeidae) from Africa and South America: molecular phylogeny and descriptions of nine new species

In this article, our knowledge of the geographic distribution of Grania species is expanded by describing seven new species, G rania bekkouchei sp. nov. , G rania brasiliensis sp. nov. , G rania capensis sp. nov. , G rania chilensis sp. nov. , G rania cryptica sp. nov. , G rania hinojosai sp. nov. , and G rania simonae sp. nov. , from poorly investigated regions of the Southern Hemisphere, plus two new species, G rania carolinensis sp. nov. and G rania unitheca sp. nov. , from off the east coast of the USA. An immature achaetous specimen that we call Grania cf. levis was also included. The newly generated data were combined with a previously published data set in order to update the hypothesis of phylogenetic relationships among Grania species. All new species except G . cryptica sp. nov. are supported by both morphological and molecular data. In addition, we find that G . chilensis sp. nov. is structured in at least four distinct populations along the Chilean coast. The species described from South Africa form a monophyletic clade where two are morphologically indistinguishable but diverging in both mitochondrial and nuclear ribosomal genes, and thus we describe them as different species, G . bekkouchei sp. nov. and G . cryptica sp. nov. Among the North Carolinian species, G . unitheca sp. nov. is indicated as a close relative of Grania monospermatheca Erséus & Lasserre, 1976, and G . carolinensis sp. nov. is indicated as a close relative of G. cf. levis. The updated phylogeny is strongly concordant with geographical species distributions, thus supporting a low level of dispersal within this genus, as has previously been hypothesized. © 2015 The Linnean Society of London     

A new species of Mysella Angas, 1877 (Bivalvia: Galeommatoidea) from Admiralty Bay, King George Island, South Shetlands, Antarctica, with data on its biology and functional anatomy

Mysella narchii sp. nov. is described from the material collected in shallow-waters of Admiralty Bay at King George Island, South Shetlands, Antarctica. The species is characterized by shell features, biology and functional anatomy. The main shell features distinguishing M. narchii sp. nov. from all other Antarctic, Subantarctic and Magellanic Mysella spp. are provided, as are anatomical characteristics that separate this new species from M. charcoti (Lamy, 1906), its most similar congener and the first Antarctic species studied in its morpho-functional aspects. M. narchii sp. nov. is an infaunal, free-living, predominantly deposit-feeding bivalve; its creeping sole and the secretion of byssal threads allow it to crawl vertically and live sporadically on firm substrata.     

Genetic, biochemical, and behavioral uniformity among populations of Myzus nicotianae and Myzus persicae

Prior to designation as distinct species, an appellation presently in question, the tobacco aphid, Myzus nicotianae Blackman (Homoptera: Aphididae), was classified as a tobacco-feeding form of the green peach aphid, Myzus persicae (Sulzer). In this study, RAPD polymorphisms distinguished members of the Myzus persicae complex (M. persicae and M. nicotianae) from three outgroup Myzus species (M. cerasi (F.), M. hemerocallis Takahashi, and M. varians Davidson). Polymorphisms within the complex did not separate populations on the basis of host association (tobacco versus other host plants) or geographic origin (collections from the United States, Europe, and Japan). Similarly, while GC-MS analysis of cuticular hydrocarbon profiles revealed both developmental and inter-populational differences within the M. persicae complex, it did not separate populations of tobacco feeding aphids from those collected off non-tobacco hosts. Finally, with the exception of their responses to a choice between lettuce and collards, the host preference behavior of a green peach aphid population, a red tobacco aphid population, and a green tobacco aphid population was indistinguishable in host preference experiments. These results add to a growing body of evidence suggesting M. nicotianae and M. persicae are conspecific.     

Hybridization and rapid differentiation after secondary contact between the native green anole (Anolis carolinensis) and the introduced green anole (Anolis porcatus)

In allopatric species, reproductive isolation evolves through the accumulation of genetic incompatibilities. The degree of divergence required for complete reproductive isolation is highly variable across taxa, which makes the outcome of secondary contact between allopatric species unpredictable. Since before the Pliocene, two species of Anolis lizards, Anolis carolinensis and Anolis porcatus, have been allopatric, yet this period of independent evolution has not led to substantial species‐specific morphological differentiation, and therefore, they might not be reproductively isolated. In this study, we determined the genetic consequences of localized, secondary contact between the native green anole, A. carolinensis, and the introduced Cuban green anole, A. porcatus, in South Miami. Using 18 microsatellite markers, we found that the South Miami population formed a genetic cluster distinct from both parental species. Mitochondrial DNA revealed maternal A. porcatus ancestry for 35% of the individuals sampled from this population, indicating a high degree of cytonuclear discordance. Thus, hybridization with A. porcatus, not just population structure within A. carolinensis, may be responsible for the genetic distinctiveness of this population. Using tree‐based maximum‐likelihood analysis, we found support for a more recent, secondary introduction of A. porcatus to Florida. Evidence that ~33% of the nuclear DNA resulted from a secondary introduction supports the hybrid origin of the green anole population in South Miami. We used multiple lines of evidence and multiple genetic markers to reconstruct otherwise cryptic patterns of species introduction and hybridization. Genetic evidence for a lack of reproductive isolation, as well as morphological similarities between the two species, supports revising the taxonomy of A. carolinensis to include A. porcatus from western Cuba. Future studies should target the current geographic extent of introgression originating from the past injection of genetic material from Cuban green anoles and determine the consequences for the evolutionary trajectory of green anole populations in southern Florida.     

Heterochrony within the cassiduloid echinoids from the Castle Hayne Limestone of Southeastern North Carolina

We analyzed the morphological relationship between Echinolampas appendiculata, Rhyncholampas carolinensis and Eurhodia rugosa from the middle Eocene Castle Hayne Limestone in southeastern North Carolina. We also investigated the heterochronic relationship between R. carolinensis and E. rugosa. Specimens were analyzed quantitatively using a truss consisting of 18 distinct morphological measurements. Principle component analysis (PCA) of these data indicated that the three groups are morphologically distinct. The analysis also showed that the groups shared parallel growth trajectories. Together with the PCA analysis, bivariate analyses showed a strong heterochronic relationship between R. carolinensis and E. rugosa. Additionally, statistical analysis of the data indicated Echinolampas appendiculata exhibited the most morphological variability among the three groups. Extinct and extant members of the three genera were found to inhabit fairly distinct water depths and substrates, thus the groups may have divided up their environment according to water depth. In light of the morphological results and phylogenetic data we speculate that Rhyncholampas carolinensis and Eurhodia rugosa initially diverged from a Rhyncholampid ancestor. Competition between the variable E. appendiculata and a morphologically similar Rhyncholampid species may have provided the selective pressure for the evolution of the relatively deep-water cassiduloid Eurhodia.     

Chloroplast and nuclear DNA variation among homozygous plants in a population of the autogamous annualMicroseris douglasii (Asteraceae,Lactuceae)

The autogamous diploid annualMicroseris douglasii of California occurs in many isolated populations. The populations consist of one to many highly inbred biotypes. Morphological variation among populations usually is greater than within populations. In spite of the virtual absence of gene flow even within populations, genetically determined character differences are randomly distributed and associated throughout the range of the species. Recent evidence even suggests introgression of chloroplasts from the relatedM. bigelovii. Offspring families from 25 plants of a very variable population were raised and examined for segregation of morphological and molecular (RAPD) markers. All 25 original plants were completely homozygous for all markers, but each differed from all others at least in some markers. The population consisted of two genetically isolated groups of plants: a distinct inbred line (3 plants) and 22 plants with random associations of a common set of markers and characters, possibly recombinant inbreds from a past hybridization event. One of these 22 plants contained a chloroplast genome found inM. bigelovii, the other 24 plants a chloroplast genome found only inM. douglasii.     

Geographic structure in the searching behaviour of a specialist parasitoid: combining molecular and behavioural approaches

An increasing number of studies have shown that the traits important to species interactions may differ geographically among populations or groups of populations within a single interacting species. We examined geographic structure in the searching behaviour of a recently discovered parasitoid in the genus Agathis (Hymenoptera: Braconidae) by examining the pattern of population structure obtained from sequence data of mitochondrial DNA cytochrome oxidase I and the pattern of population differentiation in female searching behaviour. Analyses of population structure showed no isolation by distance and suggested long distance dispersal among populations. This pattern is consistent with recent post‐glacial expansion of Agathis n. sp. Observations of searching behaviour demonstrated that populations of Agathis n. sp. differed in a subset of the behavioural traits examined and also one morphological trait. These population differences appear to be driven in part by local host plant characteristics, and based on the population structure of Agathis n. sp., have arisen relatively quickly in evolutionary time. This study suggests that the interaction between parasitoids and their host insects may exhibit substantial geographic variation, and studies that focus at the level of single populations or the species‐level may be missing much of the evolutionary dynamics of parasitoid–host interactions.     

Southward range extension and transboundary movements of reef manta rays Mobula alfredi along the east African coastline

Opportunistic in-water and aerial surveys in South Africa and the analysis of contributed citizen science data have extended the known range of reef manta rays Mobula alfredi along the eastern coast of Africa by 140 km (to Mdumbi Beach) and verified the first transboundary movements for the species. Additionally, six new long-range dispersal records have provided evidence of connectivity with the M. alfredi population off the Inhambane coastline of Mozambique. Five of these records captured one-way movements, the longest of which was an individual that travelled 505 km from Praia do Tofo to Sodwana Bay with 301 days between sightings. A single individual made a return trip between Závora, Mozambique and Sodwana Bay, South Africa (a total distance of ~870 km). These findings support the Convention on Migratory Species listing for the species, suggesting regional transboundary management units are warranted for this wide-ranging elasmobranch.     

Reproductive isolation and cryptic introgression in a sky island enclave of Appalachian birds

Reproductive isolation is central to the speciation process, and cases where the strength of reproductive isolation varies geographically can inform our understanding of speciation mechanisms. Although generally treated as separate species, Black‐capped chickadees (Poecile atricapillus) and Carolina chickadees (P. carolinensis) hybridize and undergo genetic introgression in many areas where they come into contact across the eastern United States and in the northern Appalachian Mountains. The Great Smoky Mountains harbor the last large breeding population of atricapillus in the southern Appalachians, isolated from the species’ main range by nearly 200 km. This population is believed to be reproductively isolated from local carolinensis due to an unusual, behaviorally mediated elevational range gap, which forms during the breeding season and may function as an incipient reproductive isolating mechanism. We examined the effectiveness of this putative isolating mechanism by looking for genetic introgression from carolinensis in Great Smoky Mountain atricapillus. We characterized this population and parental controls genetically using hundreds of amplified fragment length polymorphism (AFLP) loci as well as mitochondrial DNA (mtDNA) sequence data from cytochrome‐b. Great Smoky Mountain atricapillus have experienced nuclear genetic introgression from carolinensis, but at much lower levels than other populations near the hybrid zone to the north. No mitochondrial introgression was detected, in contrast to northern contact areas. Thus, the seasonal elevational range gap appears to have been effective in reducing gene flow between these closely related taxa.     

Distribution and Geographic Variation in the Western Woolly Lemur (Avahi occidentalis) with Description of a New Species (A. unicolor

The western woolly lemur is distributed through central western, northwestern and possibly northern Madagascar and is traditionally viewed as a monotypic species (Avahi occidentalis) or as a subspecies of A. laniger. We present new data on body weights of Avahi which, together with previously available body weights, provide additional evidence for recognizing eastern and western woolly lemurs as two distinct species. We then reexamine the distributions of, and chromatic variation within and between, populations of western woolly lemurs. A comparative study of wild subjects and museum skins reveals that several geographically discrete morphs exist in western Avahi, which is clearly polytypic. Marked differences between populations in fur coloration suggest that 3 distinct taxa should be recognized. The populations differ considerably in their habitat structure. In addition, field observations suggest clear differences in population density between 2 of the populations. We describe and name one new species.     

Failed species,innominate forms,and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

Cytochrome B sequences and allozymes reveal complex patterns of molecular variation in dusky salamander (Desmognathus) populations in eastern Tennessee. One group of allozymically distinctive populations, which we refer to as the Sinking Creek form (SCF), combines morphological attributes of Desmognathus fuscus with cytB sequences characteristic of Desmognathus carolinensis. This form is abruptly replaced by D. fuscus just north of Johnson City, TN with no evidence of either sympatry or gene exchange. To the south, allozymic markers indicate a broad zone of admixture with populations characterized by distinct cytB sequences and that may or may not be ultimately referable to Desmognathus conanti. A third distinctive group of populations, which we refer to as the Lemon Gap form (LGF), occurs in the foothills of the Great Smoky and southern Bald Mountains and exchanges genes with Desmognathus santeetlah along the escarpment of the Great Smokies, D. carolinensis in the southern Bald Mountains, and populations of a different haplotype clade in the Ridge and Valley. We treat all these as innominate forms that may represent “failed species,” recognizing that it may never be possible to reconcile species limits with patterns of phylogeny, morphology, and gene exchange in these salamanders.