Effect of organic carbon flux and dissolved oxygen on the benthic foraminiferal oxygen index (BFOI)

Variations in oceanic primary productivity, flux of organic carbon to the sediments, and dissolved-oxygen levels in the water column are thought to be important in the control of benthic foraminiferal test size, wall thickness, morphology, and species composition of assemblages by many foraminiferal paleontologists. Aspects of these processes should be reflected by the benthic foraminiferal oxygen index (BFOI) based on these foraminiferal characteristics. However, analyses indicate that the BFOI correlates most strongly with dissolved-oxygen levels in overlying water (R²=0.81), weakly with oceanic primary productivity (R²=0.55), and weakly with organic carbon flux to the sediments (R²=0.51). Although both dissolved oxygen and organic carbon flux are main controlling factors for benthic foraminiferal assemblages, the BFOI is a useful indicator extracted from benthic foraminiferal assemblages for estimating the condition of dissolved oxygen in Cretaceous and Cenozoic oceans.     

Oithona brevicornis Giesbrecht (Copepoda, Cyclopoida) in harborages of the northeastern part of the Black Sea shelf

Cyclopoid species Oithona brevicornis Giesbrecht, a new species for the Black Sea, was found in zooplankton samples collected in autumn of 2005 and 2006 in the Novorossiysk and Tuapse ports of the northeastern shelf of the Black Sea. This species is assumed to have gotten into the Balck Sea with the ballast waters of ships.     

A new method for breath-to-breath determination of oxygen flux across the alveolar membrane

A new method for breath-to-breath determination of the oxygen flux across the alveolar membrane is described. The principle of the method is to integrate the product of oxygen concentration and flow in the respiratory gas over an interval, which covers a complete respiratory cycle. The result is corrected for the change in oxygen content of the lungs through a formula, which, in contrast to those used in other methods, is independent of the residual capacity of the lungs. The method was evaluated with respect to repeatability by repetitive measurement of oxygen flux in twenty volunteer subjects, and with respect to accuracy by comparing the measured oxygen fluxes with those obtained by the gas collection method. The coefficient of variation was found to be 8% and the breath to breath determinations were, on an average, 6% lower than those of the gas collection method.     

Intracellular flux analysis applied to the effect of dissolved oxygen on hybridomas

Quantitative estimates of intracellular fluxes and measurements of intracellular concentrations were used to evaluate the effect of dissolved oxygen (DO) concentration on CRL 1606 hybridoma cells in batch culture. The estimates of intracellular fluxes were generated by combining material balances with measurements of extracellular metabolite rates of change. Experiments were performed at DO levels of 60% and 1% air saturation, as well as under oxygen-limited conditions. Cell extracts were analyzed to evaluate the effect of DO on the intracellular concentrations of the glutamate dehydrogenase reactants, as well as the redox state of the pyridine nucleotides in the cytosol and mitochondria. The relationship between cell density and pyridine nucleotide redox state was also investigated. Dissolved oxygen concentration had a significant effect on nitrogen metabolism and the flux through glutamate dehydrogenase was found to reverse at low DO, favoring glutamate formation. The NAD in the cytosol and mitochondria was more reduced under low DO conditions while the cytosolic NAD was more oxidized at low DO. Cytosolic NAD was reduced at higher cell densities while the redox states of cytosolic NADP and mitochondrial NAD did not exhibit significant variation with cell density. These results point to the fundamental role of the intracellular oxidation/reduction state in cell physiology and the possibility of controlling physiological processes through modulation of the dissolved oxygen level or the oxidation/reduction potential of the culture.     

Seroprevalence of equine babesiosis in the Black Sea region of Turkey

The prevalence of Theileria equi and Babesia caballi was determined in equid blood samples in five provinces of the Black Sea region of Turkey by using the indirect fluorescent antibody test (IFAT). Of 153 samples, 53 (34.6%) and 33 (21.5%) were seropositive to B. caballi and T. equi, respectively. In addition, 8 (5.2%) of samples were seropositive to both T. equi and B. caballi. Anti T. equi and B. caballi antibodies were detected in all five regions. The prevalence of B. caballi was higher than T. equi in all counties. Antibodies to T. equi and B. caballi were detected in horses of all ages, and there were no significant differences among age groups. Out of 84 horses, 32 (38.0%) were positive for B. caballi infection and 20 (23.8%) were positive for T. equi infection. Five horses (5.6%) were found to be seropositive to both B. caballi and T. equi. Of 38 donkeys, 14 (36.8%) were found to be positive for B. caballi infection and 5 (13.1%) positive for T. equi infection. In addition, 2 (5.2%) samples were seropositive for both T. equi and B. caballi infections. Out of 31 mules, 8 (25.8%) were positive for B. caballi infection and 8 (25 8%) positive for T. equi infection. One (3.2%) sample was seropositive for both T. equi and B. caballi infections. Of all the animals in this study, only 3 horses were infected by Rhipicephalus turanicus and Hyalomma detritum, and no haemoparasites were detected by microscopic examination.     

Population differentiation of the African cyprinid Barbus neumayeri across dissolved oxygen regimes

Population level response to hypoxia has become an issue of global significance because of increased frequency and intensity of hypoxic events worldwide, and the potential for global warming to exacerbate hypoxic stress. In this study, we sequenced two nuclear intronic regions and a single mitochondrial region across seven populations of the African cyprinid, Barbus neumayeri from two river drainages in Uganda: the Rwembaita Swamp‐Njuguta River System and the Dura River. We then examined two indices of population structure, G_ST and Jost's D, to detect links between oxygen availability and genetic variation and to determine if population genetic structure was associated with (i) dissolved oxygen regime (hypoxia or normoxia), (ii) geographical distance, or (iii) a combination of dissolved oxygen regime and geographical distance. Our results indicate that over a large scale (between drainages), geographical distance significantly affects the genetic structure of populations. However, within a single drainage, dissolved oxygen regime plays a key role in determining the genetic structure of populations. Within the Rwembaita‐Njuguta system, gene flow was high between locations of similar oxygen regimes, but low between areas characterized by divergent oxygen regimes. Interestingly, G_ST analyses appear to yield less realistic measures of population structure than Jost's D, suggesting that caution must be taken when interpreting and comparing the results from different studies. These results support the idea that aquatic dissolved oxygen can act as a selective force limiting gene flow among populations of aquatic species and therefore should be considered when implementing conservation plans and assessing environmental impact of human activities.     

Alchemilla boluensis (Rosaceae), a new species from the west Black Sea region (Bolu, Turkey)

Alchemilla boluensis from the west Black Sea region of Turkey is described as a species new to science and illustrated. It belongs to the section Alchemilla , subsection Calycanthum and series Elatae , and is closely related to A. amoena , from which it mainly differs in its stem and leaf features.     

The microplankton organisms at the oxic-anoxic interface in the pelagial of the Black Sea

Abstract The semi-permanent anoxia in the deep-waters of the Black Sea supported the formation of a unique microplankton community at the oxicanoxic interface. One group of ciliates ( Pleuronema marinum, Askenasia sp., species of the families Tracheliidae, Holophryidae and Amphileptidae) inhabited the water layer just above the upper boundary of H₂S, and was spatially associated with and fed on large colorless sulphur bacteria ( Thiovulum spp.). Other ciliates (species of order Scuticociliatida) populated the upper layer of the H₂S zone. A significant part of them possessed ectosymbiotic bacteria. Since the metazoans were not found in the O₂ and H₂S boundary layer, the protist community is considered to be the main factor in utilization of chemotrophic bacterial production.     

A study of the membrane-water interface region of membrane proteins

The most conspicuous structural characteristic of the alpha-helical membrane proteins is their long transmembrane alpha-helices. However, other structural elements, as yet largely ignored in statistical studies of membrane protein structure, are found in those parts of the protein that are located in the membrane-water interface region. Here, we show that this region is enriched in irregular structure and in interfacial helices running roughly parallel with the membrane surface, while beta-strands are extremely rare. The average amino acid composition is different between the interfacial helices, the parts of the transmembrane helices located in the interface region, and the irregular structures. In this region, hydrophobic and aromatic residues tend to point toward the membrane and charged/polar residues tend to point away from the membrane. The interface region thus imposes different constraints on protein structure than do the central hydrocarbon core of the membrane and the surrounding aqueous phase.     

Heterotrophic bacteria,zooflagellates, and ciliates in coastal waters of northeastern Black Sea

According to the parameters of density and biomass of heterotrophic bacterioplankton, waters in the ports of Novorossiysk and Tuapse were eutrophic-hypereutrophic and in the resort cities of Gelendzhik and Anapa they were hypereutrophic. The abundance of heterotrophic bacteria reached maximum values of 12.7–14.2 million cells/mL during the period of abnormally high water temperatures (August 2010) in recreational zones. Chainlike and filamentous forms (57–65%) of bacteria, which were typical for the strong coastal pollution of waters, prevailed. The abundance of zooflagellates (kinetoplastids) in semi-isolated water areas (port of Novorossiysk and Gelendzhik Bay) reached the level of highly eutrophic waters, 6.2–9.7 million ind/m³. However, the biomass of naked ciliates was 1.5 times lower than their maximum values earlier registered in coastal waters of the northeastern shelf. The peak of abundance of alien tintinnids of the genera Eutintinnus, Tintinnopsis, and Amphorellopsis, which were introduced via ballast waters of ships, was recorded in Novorossiysk Bay. The ratio of titinnids to the total abundance of ciliates increased 5 times and reached 25–40%. Protozoans developed poorly in the oil-polluted port of Tuapse and the open Anapa Bay.     

Ichthyoplankton of the coastal waters of northeastern shelf of the Black Sea and the Kerch Strait

We study the state of summer ichthyoplankton and dynamics of its taxonomic composition and abundance near large harbor cities (Novorossiysk and Tuapse), as well as in the navigation areas and near transshipment harbor facilities (Taman?? Prichernomor??e and Kerch Strait). We show that temporal-spatial changes in the taxonomic composition and abundance of ichthyoplankton are determined by fluctuations of water temperature, pressure of predatory comb jelly Mnemiopsis leydyi and level of water pollution. High mortality rate and low abundance of fish eggs and larvae in the polluted areas of Novorossiysk, Tuapse, and Kerch Strait indicate unfavorable conditions for the embryonic and postembryonic development of fish in these areas. As judged by the state of ichthyoplankton the most favorable conditions are in the open part of the Novorossiysk Bay and Taman?? Prichernomor??e. Starting from 2002, the spawning populations of pelagophylic fish in the Novorossiysk Bay are gradually recovering to the level of 1980.     

Variability in the taxonomic characters of Black Sea gyrodactylids (Monogenea)

Variability of the haptoral hard parts of four Black Sea Gyrodactylus species (G. alviga Dmitrieva & Gerasev, 2000; G. crenilabri Zaika, 1966; G. flesi Malmberg, 1957; G. sphinx Dmitrieva & Gerasev, 2000) was studied in relation to season, host and geographical variability. A discriminant analysis was carried out on the measurements of 14 characters of the haptor of all four species. The haptoral hard parts of the investigated gyrodactylids decrease in size with an increase in water temperature. It is known that life-span of gyrodactylids is negatively correlated with water temperature and they exhibit peak intensities at low temperature. At the same time, life-span is considered to be a general indicator of a favourable environment. Therefore, high water temperature is not apparently advantageous for gyrodactylids. In the case of low marine salinity, in adapted species the sizes of the haptoral hard parts are larger at lower levels of salinity and vice versa for typical marine species. Lastly, in specimens parasitising the primary host, these features are larger than in those parasitising a secondary host. It is possible to say that, in general, the more favourable the environment for gyrodactylids the larger their haptoral hard parts. Unfavourable environmental conditions reduce the time of embryogenesis, which has a dual effect on gyrodactylids: positive in relation to their reproduction (by increasing the reproduction rate) and negative in relation to their development (by decreasing the size of the haptoral hard parts).     

亚热带河口陆基养虾塘水体溶解性碳浓度及沉积物-水界面碳通量时空动态特征

以福建闽江和九龙江河口陆基养虾塘为研究对象,通过野外原位观测和室内模拟培养实验,开展了河口陆基养虾塘养殖期间水体溶解性有机碳(DOC)和溶解性无机碳(DIC)及养虾塘沉积物-水界面碳交换通量变化特征的研究。结果表明:时间变化上,养虾塘水体溶解性碳浓度及沉积物-水界面碳通量在闽江河口呈现8月中旬10月中旬6月中旬的特征,在九龙江河口表现为随养殖阶段推移而增加的趋势;空间变化上,闽江河口养虾塘水体溶解性碳浓度及沉积物-水界面碳通量显著高于九龙江河口;沉积物释放溶解性碳速率与水体溶解性碳浓度呈现显著正相关关系,沉积物碳释放过程是引起养虾塘水体溶解性碳浓度时空变化的重要因素。表明河口区水产养虾塘碳循环研究时需考虑不同形态碳生物地球化学循环的时空差异性。     

Community structure of deep-sea demersal fish in the North Aegean Sea (northeastern Mediterranean)

The spatial structure and seasonal changes of the demersal fish assemblages on the continental shelf (100–200 m) and upper slope (200–500 m) in the North Aegean Sea (Northern Aegean and Thracian Seas, northeastern Mediterranean, Greece) were analysed. Seasonal experimental trawl surveys, carried out from summer 1990 to autumn 1993, provided a total of 151 demersal fish species. Analysis of 259 bottom trawls showed the existence of four groups associated with the continental shelf and the upper slope; each group was dominated by a small number of species. The bathymetric distribution of the species, established using measures of the centre of gravity and habitat width, revealed that most of the species had a wide distributional range within the study area, although a few were restricted to the greatest depths. Density, biomass, species richness and diversity decreased significantly with depth, and were also indicative of distinctive characteristics between these fish assemblages. Mean fish weight exhibited two different trends: a bigger-deeper phenomenon at the continental shelf and a smaller-deeper phenomenon at the upper slope. The variability in assemblage structure was determined mainly by depth and, to a lesser extent, by season and geographical location. For some species, results suggest a pattern of gradual species replacement along the depth gradient coupled with ontogenetic habitat shifts.     

Taxonomic composition and seasonal dynamics of the meroplankton of the coastal zone of the northeastern Black Sea

The composition and dynamics of the numerical density of meroplankton in the Bays and Seaports of the Northeastern Black Sea, viz., Novorossiysk, Tuapse, Gelendzhik, and Anapa were studied in the long-term aspect. The larvae of the benthic invertebrates of 73 taxa were identified. Meroplankton had their peak abundance period from May to September. Larvae of mollusca Mytilus galloprovincialis and Cardiidae gen sp. (Bivalvia) were dominant in the spring; larvae of mollusca Bittium reticulatum (Gastropoda), Mytilaster lineatus were dominant in the summer, and M. galloprovincialis, Anadara cf. inaequivalvis, Chamelea gallina (Bivalvia) were dominant in the autumn. Polychaete and cirriped larvae occurred in the plankton during the spring-autumn season. Complex species that are tolerant to pollution, such as Amphibalanus improvisus, M. lineatus, B. reticulatum, and the genus Polydora were abundant in Novorossiysk and the Tuapse.     

Physiological (antioxidant) responses of estuarine fishes to variability in dissolved oxygen

Cycles of dissolved oxygen (DO) in estuaries can range from anoxia to various levels of supersaturation (200–300%) over short time periods. Aerobic metabolism causes formation of damaging reactive oxygen species (ROS), a process exacerbated by high or low DO. Fish can generate physiological defenses (e.g. antioxidant enzymes) against ROS, however, there are little data tying this to environmental conditions. We investigated physiological defenses generated by estuarine fishes in response to high DO and various DO cycles. We hypothesized that chemical defenses and/or oxidative damage are related to patterns of DO supersaturation. Specific activities of antioxidants in fish tissues should be positively correlated with increasing levels of DO, if high DO levels are physiologically stressful. We caged common benthic fishes (longjaw mudsucker, Gillichthysmirabilis, and staghorn sculpin, Leptocottusarmatus, in CA and spot, Leiostomusxanthurus and pinfish, Lagodonrhomboides, in NC) during summer 1998 in two estuarine sites in southern North Carolina and two in central California. At each site a water quality meter measured bottom DO, salinity, temperature, depth, pH and turbidity at 30 min intervals throughout the study. These sites exhibited a wide variety of dissolved oxygen patterns. After 2 weeks in the cages, fish gills and livers were analyzed for antioxidant enzymes (glutathione peroxidase, catalase and superoxide dismutase) and the metabolite glutathione. All fish exhibited antioxidant enzyme activity. There was a significant site-dependent effect on all enzyme activities at the NC sites, with the most activity at the site with the highest DO cycling and the most DO supersaturation. There was a trend towards higher enzyme activities under high DO levels at the CA sites.     

Effects of different Rhododendron control methods in eastern beech (Fagus orientalis Lipsky) ecosystems in the western Black Sea region of Turkey

Intensive weed control and plot preparation practices have become a critical and integral part of productive beech forest management in Turkey’s coastal Black Sea region (BSR). This study was conducted in an eastern beech forest of 100+ year old in the BSR to evaluate ecosystem effects of three different experimental Rhododendron ponticum understory control methods with a randomised block design, including manual grubbing, foliar and cut stump spraying with imazapyr (Arsenal) and foliar and cut stump spraying with triclopyr (Garlon). Untreated vegetation plots served as controls. Evaluation of these treatments included their effects on understory and forest floor biomass and nutrients (C, N, P, S, K, Ca and Mg) and effects on soils, including bulk density, pH, soil nutrients (C, N, P and S), exchangeable cations (K, Ca and Mg) and soil cation exchange capacity (CEC). Grubbing and imazapyr treatments had greatly reduced the amount of understory biomass 5 years after application (P = 0.002). Triclopyr treatment also had a major effect on understory vegetation control, but by 5 years later, about 10% of the rhododendron originally present on these plots had gradually re‐sprouted and partially covered the plots. Five years after woody vegetation control treatments, at the 0‐ to 20‐cm depth, treatments did not appear to affect soil bulk density, pH and CEC. For the upper 20‐cm soil depth, the exchangeable soil K concentration at the 10‐ to 20‐cm depth on triclopyr‐treated plots was 33% higher than on grubbing plots, and it was twice that of imazapyr application plots. Imazapyr plots had almost 11 times more dead organic matter on the forest floor than there was on grubbing plots. Forest floor C concentrations on imazapyr plots were 26 and 14% greater than those on grubbing and triclopyr plots, respectively. Total ecosystem (forest floor + understory + soil exchangeable) Ca content was 50% higher on imazapyr plots than that on triclopyr plots, while the ecosystem K pool on imazapyr treatment plots was 27% lower than that on triclopyr plots. Herbicides can be used as an alternative for achieving some forest management objectives when other vegetation control methods are not feasible or economical. It is recommended that vegetation control not be used on steep slopes because of greater risk of soil erosion. There may be benefits in encouraging slash disposal by fire after imazapyr treatments, thus removing recalcitrant understory residues left on the forest floor and releasing the essential nutrients within them.