Identification of species within Tetrastigma (Miq.) Planch.(Vitaceae) based on DNA barcoding techniques

Many species of Tetrastigma (Miq.) Planch. (Vitaceae) have long been used as medicinal plants in China, and some are endangered due to overexploitation. Although adulterants are often added to traditional Chinese medicines, there is no reliable or practical method for identifying them. In this study, we used four markers (rbcL, matK, trnH-psbA and internal transcribed spacer [ITS]) as DNA barcodes to test their ability to distinguish species of Tetrastigma. The results indicated that the best barcode was ITS, which showed significant inter-specific genetic variability, and thus its potential as a DNA barcode for identifying Tetrastigma. Multiple loci provided a greater ability to distinguish species than single loci. We recommend using the combined rbcL+matK+ITS barcode for the genus. Phylogenetic trees from each barcode were compared. Analyses using the unweighted pair group method with arithmetic mean discriminated an equal or greater percentage of resolvable species than did neighbor joining, maximum likelihood, or maximum parsimony analyses. Additionally, five medicinal species of Tetrastigma, especially T. Hemsleyanum, could be identified precisely using DNA barcoding.     

DNA barcoding of Gaultheria L.in China (Ericaceae: Vaccinioideae)

Four DNA barcoding loci,chloroplast loci rbcL,matK,trnH-psbA,and nuclear locus internal transcribed spacer (ITS),were tested for the accurate discrimination of the Chinese species of Gaultheria by using intraspecific and interspecific pairwise P-distance,Wilcoxon signed rank test,and tree-based analyses.This study included 186 individuals from 89 populations representing 30 species.For all individuals,single locus markers showed high levels of sequencing universality but were ineffective for species resolvability.Polymerase chain reaction amplification and sequencing were successful for all four loci.Both ITS and matK showed significantly higher levels of interspecific species delimitation than rbcL and trnH-psbA.A combination ofmatK and ITS was the most efficient DNA barcode among all studied regions,however,they do not represent an appropriate candidate barcode for Chinese Gaultheria,by which only 11 out of 30 species can be separated.Loci rbcL,matK,and trnH-psbA,which were recently proposed as universal plant barcodes,have a very poor capacity for species separation for Chinese Gaultheria.DNA barcodes may be reliable tools to identify the evolutionary units of this group,so further studies are needed to develop more efficient DNA barcodes for Gaultheria and other genera with complicated evolutionary histories.     

白龙江流域木本植物区系特征

白龙江流域位于黄土高原、青藏高原、秦巴山地等３个自然地理区域的交接地带,生长着相当丰富的木本植物种类,计有木本植物９０７种（含种下等级）,分别隶属于１０３科,２８１属。其中中国植物特有属２０属,白龙江土著特有种２５个。根据这些种的地理分布,提出白龙江流域木本植物区系的５个基本特征：１．种类丰富;２．起源古老;３．温带性质;４．南北交汇,东西兼容的过渡特征;５．特有植物繁多。     

DNA barcoding is a useful tool for the identification of marine fishes from Japan

In this study, 229 DNA sequences of cytochrome oxidase subunit I gene (COI) from 158 marine fishes of Japan were employed to test the efficacy of species identification by DNA barcoding. The average genetic distance was 60-fold higher between species than within species, as Kimura two parameter (K2P) genetic distances averaged 17.6% among congeners and only 0.3% among conspecifics. There were no overlaps between intraspecific and interspecific K2P distances, and all sequences formed species units in the neighbor-joining dendrogram. Hybridization phenomena in two species (Kyphosus vaigiensis and Pterocaesio digramma) were also detected through searches in Barcode of Life Data Systems (BOLD). DNA barcoding provides a new way for fish identification.     

DNA条形码技术在植物中的研究现状

DNA条形码技术（DNA barcoding）是用短的DNA片段对物种进行识别和鉴定的分子生物学技术。在动物研究中该技术已经成功应用于利用线粒体细胞色素c氧化酶亚基I（COI）进行物种鉴定和发现隐种或新物种。相对于动物, COI基因在高等植物中进化速率较慢, 因此植物条形码研究以叶绿体基因组作为重点, 但目前还处于寻找合适的基因片段阶段。许多学者对此进行了积极的探索, 报道了多种植物条形码的候选片段或组合, 但还没有获得满足所有标准的特征位点片段。该文介绍了DNA条形码的标准、优点、工作流程及数据分析方法, 总结了DNA条形码在植物中的研究现状。     

西北地区木本植物区系多样性研究

西北地区在中国植物区系上属于泛北极植物区,其南部基本上控制在中国-日本植物亚区的华中地区内,区系成分以北亚热带成分占优势,中、东部主要控制在中国-日本植物亚区内的华北地区中的黄土高原地区内,以华北区系成分占优势,西南部主要属青藏高原植物亚区和中国-喜马拉雅植物亚区,区系成分以唐古特和横断山区系成分占优势,北部主要是亚洲荒漠植物亚区,区系成分是以古地中海成分占优势。本区有木本植物(不包括栽培植物)103科338属1729种(含种下等级),其中裸子植物6科17属57种,被子植物97科321属1672种,另外,具有中国特有属26个,土著特有种173个(含种下等级)。大科、大属在区系组成中起着非常重要的作用,该区木本植物区系包含有15个分布区类型及其17个变型,其中北温带分布、泛热带分布、东亚至北美间断分布、东亚分布等成分占有重要地位。其木本植物区系的主要特征为:种类比较丰富;分布不均,区域差异大;地理成分复杂,具有明显的温带性质;起源古老;土著特有种较多;区系联系广泛,多种区系成分的汇集、混杂和过渡。     

湖南吉首维管植物区系性质的分析

吉首地处云贵高原边缘,境内地形复杂,植物种类较为丰富.调查统计表明,该地区共有土著维管束植物186科、662属、1534种,区系成分复杂.通过对这些植物科的区系成分和被子植物的优势科、表征科的分析,阐明了该地区植物区系具有明显的亚热带性质,为热带向温带区系的过渡类型.     

DNA barcoding in closely related species: A case study of Primula L.sect.Proliferae Pax (Primulaceae) in China

DNA barcoding is a method of identifying species by analyzing one or a few short standardized DNA sequences. There are particular challenges in barcoding plants, especially for distinguishing closely related species. Hence, there is an urgent need to evaluate the performance of candidate loci for distinguishing between species, especially closely related species, to complement the rbcL + matK combination suggested as the core barcode for land plants. We sampled 48 individuals representing 12 species in Primula sect. Proliferae Pax in China to evaluate the performance of eight leading candidate barcode loci (matK, rbcL, rpoB, rpoCl, trnH-psbA, psbK-psbI, atpFatpH, and internal transcribed spacer (ITS)). The core combination rbcL + matK gave only 50% species resolution in sect. Proliferae. In terms of intraspecies and interspecies divergence, degree of monophyly, and sequence similarity, ITS, trnH-psbA, and psbK-psbI showed good performance as single-locus barcodes. Internal transcribed spacer displayed the highest genetic divergence and best discriminatory power, both alone and in combination with rbcL +matK (83.3% species resolution). We recommend evaluating the use of ITS for barcoding in other species. Low or single copy nuclear regions would provide more sophisticated barcoding tools in the long term, even though further research is required to find suitable loci.     

木本植物基因组DNA提取及鉴定

采用改良后的CTAB法,对山葡萄、软枣猕猴桃、蒙古栎、核桃楸、西伯利亚红松和偃松基因组DNA进行提取。结果表明,所提基因组DNA分子量与λDNA（48 kb）接近,其紫外吸收比在1.66～1.89之间。第3次和第4次上清提取的DNA质量优于第1次和第2次。从提取产量看,每克鲜重提取DNA量最小为15 μg·g^-1（核桃楸第4次上清）,最高的为272 μg·g^-1（山葡萄第3次上清）。西伯利亚红松和偃松第1次和第2次上清基本未提出DNA,第3次和第4次上清中得到了较高质量的DNA。经酶切鉴定和PCR扩增,所提的基因组DNA可以用于进一步研究。     

五大连池新期火山熔岩台地维管束植物物种多样性

在野外调查的基础上,对五大连池新期火山熔岩台地维管束植物物种多样性进行了统计分析,结果表明:(1)五大连池新期火山熔岩台地共有维管束植物35科66属82种,9个优势科含有的属、种数分别占总属、种数的51.52%和57.32%;该研究区熔岩台地种子植物有30科、61属和75种的分布区类型,温带成分占主体;植物资源按其性质和用途分为药用、观赏和蜜源等12类。(2)根据Raunkiaer生活型分类,以地面芽植物的草本植物最占优势,其次为高位芽植物的乔木和灌木。(3)在水分生态类型中,中生植物是主要生态类型,旱生植物占较高的比例。研究认为,五大连池新期火山熔岩台地熔岩新、风化弱、降水大部分渗流、蒸发强等极不利生态条件形成了火山熔岩石生植物的特有种群。     

药用植物DNA条形码鉴定研究进展

DNA条形码是利用相对较短的标准DNA片段对物种进行快速准确鉴定的一门技术。DNA条形码技术可以从分子水平弥补传统鉴定方法的一些不足。该技术具有良好的通用性,使得物种鉴定过程更加快速,已经广泛应用于动物物种的鉴定研究中。近年来,随着药用植物DNA条形码鉴定研究的快速发展,逐渐形成了药用植物和植物源中药材鉴定的完善体系。本文综述了DNA条形码技术鉴定药用植物的原理,介绍了中草药传统鉴定方法及其缺陷、使用DNA条形码技术鉴定植物源药材的意义以及DNA条形码在药用植物鉴定中的应用,对其应用前景进行了展望。     

DNA条形码与动植物分类学的研究

DNA条形码在动植物分类学中的研究最近几年非常火热。这项技术在国外研究的比较多,国内的许多方面的研究还没达到国际水平。我国的动植物种类比较繁多,地区差异也较大,怎样能将这些物种准确,快速的进行分类,是众多动植物学家一直在研究的难题。针对DNA条形码研究的现状和他在动植物学中应用以及它存在的争议来进一步认识DNA条形码。     

DNA条形码技术在毒品原植物大麻鉴定中的应用

准确鉴定毒品原植物大麻的种属及品种具有重要的理论和实践意义。为了探讨DNA条形码技术用于毒品原植物大麻种属鉴定及品种鉴定的可行性,该研究以60份大麻原植物(分别采自内蒙、黑龙江、陕西延安、陕西榆林4个地区的栽培大麻雌雄各6株及新疆玛纳斯地区的野生大麻雌雄各6株)为材料,通过从其叶片中提取的DNA为模版,利用核糖体DNA基因间隔区的通用引物ITS2和叶绿体DNA的通用引物psbAtrnH进行PCR扩增,对扩增片段进行双向测序,将测序结果进行人工矫正和比对。结果显示:所有大麻样本的ITS2扩增片段序列没有变异完全一致,但psbA-trnH扩增片段变异较大共检测出8种cpDNA单倍型,用MEGE5.1软件计算种间遗传距离,并构建NJ系统聚类树可以有效把这五个地区的大麻样本区别开来,因此证明DNA条形码技术在毒品原植物大麻的种属鉴定方面具有可行性,但其用于大麻的种属鉴定的准确性、可靠性及在其来源地鉴定及品种鉴定中的可能性还有待进一步深入地研究。     

山东艾山植物区系研究

艾山植物区系是山东半岛植物区系的典型代表之一,具有以下特征：植物种类比较丰富,共计有维管植物96科,311属,488种。该植物区系优势科现象明显;植物区系具有古老性,单种属和寡种属数量较多;分布类型多样,地理成分复杂,温带成分优势明显达161个属,泛热带成分丰富有50个属,热带植物区系为21个属。将艾山植物区系与邻近植物区系的植物地理分布类型进行聚类分析和属、种相似性系数和优势科的比较,结果表明,艾山植物区系与千山植物区系的差异比较大。植物区系资料研究不支持把辽东半岛、山东半岛划为同一植物区系亚地区。