Impacts of a ‘black tide’ harmful algal bloom on rocky-shore intertidal communities on the West Coast of South Africa

Algal blooms commonly occur along the South African west coast. In March 1994 a dense bloom developed within St Helena Bay. Its subsequent decay caused near-shore hypoxia and elevated hydrogen sulphide levels, leading to it being termed a ‘black tide’. The bloom caused immediate massive intertidal mortalities (95% reduction of biomass), significant changes in community structure, and declines in richness and diversity. Only four taxa were not diminished: ephemeral algae, the gastropod Afrolittorina knysnaensis, the anemone Bunodactis reynaudi and the false limpet Siphonaria capensis. This limpet species subsequently increased at impacted sites relative to controls, probably reflecting reduced competition from other grazers. Ephemeral algae flourished during early recolonisation while grazers were depleted, but declined as grazers re-established. Manipulative experiments demonstrated that grazers do have this capability. Perennial algae also flourished, but lagged behind ephemerals, possibly contributing to their decline. Predators took longest to recover. Differences in the responses of species reflect differing tolerances, zonation patterns and biological interactions. Communities at control sites remained unchanged over the four-year study, and those exposed to a low intensity of the bloom were little affected, but communities exposed to its full intensity failed to recover fully within four years. Increasing frequency of harmful algal blooms along the west coast of South Africa could, therefore, significantly alter rocky-shore communities if intervals between bloom events become shorter than recovery times.     

Three reasons to re-evaluate fungal diversity ‘on Earth and in the ocean’

Attempts to assess fungal global species richness are confounded by several problems: uncertainty about the number of described species, incomplete fungal inventories even at a high taxonomic level, high diversity of unknown, often small and elusive taxa, high levels of morphological conservation, and incomplete knowledge of their ecological and biogeographical distributions. The two main bases for estimating total fungal diversity are (1) the number of described species and their taxonomic structure, and (2) extrapolating species-area relationships. We argue that knowledge of fungal taxonomy and environmental sampling of fungi are both too incomplete for either approach to be reliable. However, it is likely that the true number of fungal species on the planet is a seven-digit number, and may even be an order of magnitude higher.     

Does post-fire abiotic habitat filtering create divergent plant communities in black spruce forests of eastern Canada?

We investigated the role of post-fire residual organic matter (ROM) thickness as a driver of community assembly in eastern Newfoundland. We hypothesized that if post-fire community assembly is predominantly controlled by ROM thickness (an abiotic habitat filter), then post-fire species composition and functional traits should correspond to the depth and distribution of ROM. However, if species interactions (biotic filter) are the primary constraints on community assembly, then post-fire species composition and their functional traits should be independent of the depth and distribution of ROM. We tested these predictions in three relatively mature plant communities, Kalmia angustifolia heath, black spruce (Picea mariana)-Kalmia shrub savannah and black spruce forest. Through pre-fire stand reconstruction, we found evidence that the three communities originated from black spruce forest. ROM thickness in heath was almost twice that of shrub savannah and six times more than forest, suggesting a gradient in fire severity. Distribution of ROM corresponded to patterns in vegetation dominance, where thick ROM (>2 cm) filtered out black spruce in favour of Kalmia. ROM thickness was a strong predictor of vegetation composition and function between heath and forest, but this was not found between the shrub savannah and forest. We attribute this to species interactions and allelopathy, which may have become important when ROM thickness was suitable for both seed (black spruce) and vegetative (Kalmia) regenerating species. Thus, priority effects or “who came first” may have lead to shrub savannah formation when ROM thickness was ~2 cm. We conclude that abiotic habitat filtering of thick ROM (>2 cm) on (primarily) species’ regeneration traits was the primary driver of community divergence from forest to heath and shrub savannah.     

Zooplankton communities of the Arctic’s Canada Basin: the contribution by smaller taxa

Zooplankton was sampled at ten stations in the Canada Basin during August 2002 using both 53- and 236-m mesh nets to examine the contribution by smaller and less studied species. Copepod nauplii, the copepods Oithona similis, Oncaea borealis and Microcalanus pygmaeus, and the larvacean Fritillaria borealis typica dominated the upper 100 m of the water column numerically, while biomass was dominated by the copepods Calanus hyperboreus, Calanus glacialis and Paraeuchaeta glacialis, and the chaetognath Eukrohnia hamata. Zooplankton biomass ranged from 3.7 to 14.5 mg AFDW m^–3, with a mean of 9.6 mg AFDW m^–3 . While the three microcopepods contributed less than 5% of the biomass, estimates of their potential growth rates suggest they might contribute upwards of 25% of the metazoan zooplankton production. The true rates of growth and development of these microcopepods in the Arctic need to be determined to conclusively ascertain their importance.     

Climatic factors affecting the occurrence of cloudy stain on the fruit skin of ‘Triumph’ Japanese persimmon

Cloudy stain is a physiological disorder of the Japanese persimmon blemishing the skin and causing a great reduction of fruit quality, thus decreasing its commercial value. The stain starts at or just prior to the fruit colour-break stage, coinciding with the presence of cuticular cracks which increase cuticle water permeability and expose subepidermal cells to air and water, causing oxidation of polyphenol substances of large skin areas that turn almost black. The incidence of the disorder examined over four consecutive years in two growing areas of Spain revealed significant differences from year to year, between areas and even the tree face examined. The data consistently showed that cooler groves and fruit located on the northern face of the canopy were more prone to develop the stain. During the 4 years of the study, the average daily minimum temperature of a period of 15–25 days prior to the onset of staining followed the same order as the yearly staining rate, and accumulated hours below 13°C correlated significantly with the percentage of fruit starting the disorder. No relationship was found between the time-course of relative humidity (RH) and the onset of staining, but once the stain started the lower RH resulted in the lower percentage of affected fruit. Dew point, wind speed, rainfall and evapotranspiration did not correlate either with the onset of staining or with its incidence. Rind of cloudy-stained fruit had higher concentration of N, K, Mg and Fe and lower concentration of Ca than that of healthy fruit, but it is not the cause of the disorder. Accordingly, we conclude that cloudy stain of Japanese persimmon starts after a period of low temperature (≤ 13°C) and, afterwards, RH is responsible for its development and severity.     

Revisiting the host effect on ectomycorrhizal fungal communities: implications from host–fungal associations in relict Pseudotsuga japonica forests

Host identity is among the most important factors in structuring ectomycorrhizal (ECM) fungal communities. Both host–fungal coevolution and host shifts can account for the observed host effect, but their relative significance in ECM fungal communities is not well understood. To investigate these two host-related mechanisms, we used relict forests of Pseudotsuga japonica, which is an endangered endemic species in Japan. As with other Asian Pseudotsuga species, P. japonica has been isolated from North American Pseudotsuga spp. since the Oligocene and has evolved independently as a warm-temperate species. We collected 100 soil samples from four major localities in which P. japonica was mixed with other conifers and broadleaf trees. ECM tips in the soil samples were subjected to molecular analyses to identify both ECM fungi and host species. While 136 ECM fungal species were identified in total, their communities were significantly different between host groups, confirming the existence of the host effect on ECM fungal communities. None of the 68 ECM fungal species found on P. japonica belonged to Pseudotsuga-specific lineages (e.g., Rhizopogon and Suillus subgroups) that are common in North America. Most of ECM fungi on P. japonica were shared with other host fungi or phylogenetically close to known ECM fungi on other hosts in Asia. These results suggest that after migrating, Pseudotsuga-specific fungal lineages may have become extinct in small isolated populations in Japan. Instead, most of the ECM fungal symbionts on P. japonica likely originated from host shifts in the region.     

Patterns in the distribution of fish assemblages in Río Amacuzac,Mexico: influence of abiotic factors and biotic factors

Patterns in spatial and seasonal distribution of fish communities were analyzed in the Río Amacuzac, Mexico, and their relationship to environmental variables and habitat characteristics. The PCA biplot of the study sites and environmental factors showed the first two axes accounting for 52.93% of the variance. The diagram showed the study sites ordination in environmental gradients. The first axis explained variables related to habitat characteristics and temperature (36.30%) and second axis arranged the sites in physicochemical and water quality environmental gradients (conductivity, dissolved oxygen, orthophosphates, ammonium, pH) displaying seasonal variation. Fifteen species were recorded, eight of them are exotic. One new record appeared for the Río Amacuzac: Pterygoplichthys disjunctivus is exotic. Study sites with highest species richness were: 5, 7 and 9 (twelve species each one); while the study sites with low species richness were 1, 2, 3 and 6 (eight species each one). Six of the species were distributed throughout the whole river. Based on the composition of the fish fauna, the study sites form two groups and the analysis of fish species displays three groups according to the Bray–Curtis index. The diagram of the canonical correspondence analysis relates environmental parameters to the abundance of fish species and showed that the first two axes exhibit 78.31% of the explained variance. Species richness had a spatial pattern associated to the introduction of exotic species for ornamental uses. According to the results of the importance value index (IVI), the dominant species were the poecilids Poeciliopsis gracilis and Heterandria bimaculata, small fishes that were introduced in the river. Río Amacuzac has a biotic alteration in the structure of fish communities due to the invasion of exotic species, representing risks to the integrity of the native fish fauna.     

Polyphenol gene expression and changes in anthocyanins and polyphenols in the skin of ‘Braeburn’ apples after the autumn application of prohexadione-calcium

Prohexadione-calcium (Pro-Ca) transient inhibits 2-Oxoglutarate-dependent dioxygenases and causes significant changes in the flavonoid spectrum of apple. In the present study the influence of two autumn preharvest applications of Pro-Ca on the polyphenol metabolism in apple peel during the advanced maturation was investigated. Pro-Ca was sprayed in two doses, approximately five and 3 weeks before the technological maturity. Changes in the concentrations of hydroxycinnamic acids, dihydrochalcones, flavonols, flavanols and anthocyanins as well as their related gene expression and enzyme activities in the apple peel were monitored six times during the advanced maturation until the technological maturity of the fruits. To evaluate its influence on red coloration differences in the chromatic values a*, h° and L* between the treated and untreated apples were monitored. The parameters showed a temporary effect of Pro-Ca on the intensity of red coloration, which was not detected anymore at the technological maturity of apples. The application of Pro-Ca decreased the flavanone 3-hydroxylase activity and slightly inhibited activities of all the enzymes analyzed. Concomitantly, the concentrations of anthocyanins in the peel of the treated apples decreased, whereas the concentrations of hydroxycinnamic acids, dihydrochalcones and flavan 3-ols increased. Flavonol concentrations, however, remained unchanged. The expression of ANS, ANR, FGT and MYB10 was downregulated after the Pro-Ca treatment. The results indicate that the autumn application of Pro-Ca modulates the biosynthetic pathway resulting in distinct changes in the flavonoid composition in the apple peel of ‘Braeburn’ apples. However, the changes are temporary and are generally suspended during apple storage.     

Update on the role of molecular factors and fibroblasts in the pathogenesis of Dupuytren’s disease

The mechanism by which the fibroblast is able to trigger palmar fibromatosis is still not yet fully understood. It would appear certain that the “abnormal” fibroblasts continuously synthesise profibrotic cytokines which are able to determine the activation to myofibroblasts, to stimulate them to the further proliferation and synthesis of other cytokines, to modify the cells’ differentiation and ultrastructural characteristics, as well as the production of matrix and other proteins. Several fibroblast growth factors have been suggested to be responsible of an abnormal cell activation with an aberrantly elevated collagen synthesis and extracellular deposition in Dupuytren’s disease, as TGF-Beta, TNF-Alfa, PDGF, GM-CSF, free radicals, metalloproteinases, sex hormones, gene modified expression, mechanical stimulation. The Authors review the current state of knowledge in the field, by analyzing the role of these cytokines in the palmar fibromatosis.     

Plant and animal communities in brackish supra-littoral pools (‘dobben’) in the northern part of the Netherlands

Fifty brackish supra-littoral pools bordering the Waddenzee were studied. The structure of plant communities (Potamogeton pectinatus L., Ranunculus baudotii Godr. and Zannichellia pedunculata Rchb.) is discussed in relation to water level fluctuations, chlorinity and water transparency. Chlorinity tolerances of the macrophytes (7 species) are discussed. The macrofauna was studied semi-quantitatively. The aquatic Coleoptera had the greatest diversity (24 species). A distinct relationship between the number of Coleoptera species and the percentage of macrophyte coverage was found. The distribution patterns of the most frequent species with respect to chlorinity categories are shown in histograms. The number of aquatic Heteroptera species is also discussed in relation to chlorinity and vegetation coverage. Less important macrofaunal groups (the Crustacea, Mollusca and Odonata) occurred in low species numbers.     

The micro-distribution of aquatic macroinvertebrates in the Wye river system: the result of abiotic or biotic factors?

SUMMARY. 1. Macroinvertebrates were sampled from three habitats at each of forty-five sites in the catchment of the Welsh River Wye. Micro-distribution patterns between three habitat types were assessed for those species which occurred most commonly.
2. Of the fifty-three taxa for which analysis was possible, twenty showed a significant association with habitat type. Eleven occur mostly in margins, eight mostly in riffles, and one in flats (depositing reaches).
3. Twenty-one taxa, including eleven additional to those show significant associations, showed. significant differences between habitats in their relative abundance. Ten were most abundant in margins, eight in riffles and three in flats.
4. Factors possibly responsible for these habitat preferences are discussed.     

A ‘minimum stress inflexion’ in relation to environmental and biotic influences on the dynamics of subtidal encrusting communities?

The sedentary fauna of sublittoral boulders was studied at five sites with very different environmental conditions within Lough Hyne Marine Nature Reserve (51° 30 N, 9° 18 W). The degree of competition was assessed through the construction of competitive hierarchies built up from the results of nearly 3000 interactions between organisms. Communities at all sites were predominantly hierarchically organised with few stand-offs recorded. Density of interactions was correlated with total space occupation. Flow speed at all sites was logged over 24 h and this factor also correlated with space occupation. Degree of disturbance was assessed through the use of marked boulders at each site. Species diversity peaked where all factors were moderate and was lowest at extreme sites. The effects of these environmental variables and biotic factors in determining community composition are discussed, and a working model detailing a Minimum Stress Inflexion is described. This represents an extension of the intermediate disturbance hypothesis in that it is proposed that disturbance in this system may serve to reduce sediment load as opposed to preventing space monopolisation in the classical model.     

The diversity of soil communities, the ‘poor man's tropical rainforest’

This paper reviews the various factors that facilitate the high biodiversity of soil communities, concentrating on soil animals. It considers the problems facing soil ecologists in the study of soil communities and identifies the important role such communities play in terrestrial ecosystems. The review also considers diversity and abundance patterns. A range of factors are identified that may contribute to the biodiversity of soil and their role is reviewed. These include diversity of food resources and trophic specialization, habitat favourableness, habitat heterogeneity in space and time, scale and spatial extent of the habitat, niche dynamics and resource partitioning, productivity, disturbance and aggregation.Biodiversity of soil organisms appears high, largely attributable to the nested set of ecological worlds in the soil — the relationship between the range of size groupings of soil organisms relative to the spatial heterogeneity perceived by these various groups — that provide a large area for life for the micro- and mesofauna. The role of aggregation and how it relates to the spatial scale under consideration and to species interactions amongst soil animals is largely unknown at present. The role of disturbance is equivocal and man's activities more often than not seem to lead to a reduced biodiversity of soil communities. This paper also identifies areas where further work is desirable to improve our understanding of the structure and functioning of soil communities.