Incidental invertebrate-derived DNA detection of invasive and threatened species in temperate dry Southeast Australian forest

Well-informed biodiversity conservation practice can often be precluded by poor species detectability. For example, populations being missed during surveys can lead to them being omitted from species lists or area management plans. iDNA (invertebrate-derived DNA) is a recently developed set of techniques for improving the detectability of elusive vertebrates by exploiting their associated invertebrates. Parasitic and scavenging invertebrates can be readily collected, and their gut contents DNA barcoded to detect local vertebrate diversity. However, most iDNA surveys have targeted mammals and have been carried out in tropical areas and/or rainforests. We carried out iDNA surveys targeting frogs in temperate dry sclerophyll forests in south-eastern Australia. We set mosquito traps broadcasting recorded frog calls with the aim of collecting frog-biting flies, which are attracted to frog calls. We collected 156 fly specimens, although none were of frog-biting species, and no frogs were detected via iDNA, despite many being observed in the field. However, two mammal and one reptile species were detected via iDNA: the feral cat (Felis catus: Felidae), domestic dog or dingo (Canis lupus: Canidae) and the threatened Rosenberg's monitor (Varanus rosenbergi: Varanidae). Vertebrate-sampling flies are likely highly abundant in the area since they were collected apparently incidentally in traps lacking appropriate attractants; a promising result for further surveys is different attractants are employed. This study is one of the few in which an invasive species has been detected through iDNA, and highlights its potential for improved detectability of threatened species outside of the tropics and early detection of invasive species.     

Prevention of mosquitoes (Diptera: Culicidae) and house flies (Diptera: Muscidae) from entering simulated aircraft with commercial air curtain units

Commercially available air curtain units were used to create air barriers to prevent mosquitoes and house flies from entering a simulated aircraft doorway together with passengers. Two assemblies of simulated passenger bridge and aircraft were constructed, and airflow measurements were recorded to confirm airflow characteristics for several combinations of commercial units. Three mosquito species were selected for different host-seeking characteristics, and house flies were selected to represent a large, strong-flying insect. Batches of 20 or 200 insects of four species were released into the passenger bridge just before 25 persons passed through the assembly, then insects that entered the aircraft cabin were recovered. Results showed that horizontal plus vertical or vertical-mounted air curtain units with the airflow directed at a 45 degrees angle into the passenger bridge excluded 95-99% of the mosquitoes and 95-100% of the house flies, respectively. Airflows were measured and estimated to be effective if the mean was > 4 m/s in the critical area in the center of the converging airflows. The study validates the concept that air barriers can effectively prevent the passage of flying insects into an aircraft.     

Carrion fly‐derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community

Metabarcoding of vertebrate DNA derived from carrion flies has been proposed as a promising tool for biodiversity monitoring. To evaluate its efficacy, we conducted metabarcoding surveys of carrion flies on Barro Colorado Island (BCI), Panama, which has a well‐known mammal community, and compared our results against diurnal transect counts and camera trapping. We collected 1,084 flies in 29 sampling days, conducted metabarcoding with mammal‐specific (16S) and vertebrate‐specific (12S) primers, and sequenced amplicons on Illumina MiSeq. For taxonomic assignment, we compared blast with the new program protax , and we found that protax improved species identifications. We detected 20 mammal, four bird, and one lizard species from carrion fly metabarcoding, all but one of which are known from BCI. Fly metabarcoding detected more mammal species than concurrent transect counts (29 sampling days, 13 species) and concurrent camera trapping (84 sampling days, 17 species), and detected 67% of the number of mammal species documented by 8 years of transect counts and camera trapping combined, although fly metabarcoding missed several abundant species. This study demonstrates that carrion fly metabarcoding is a powerful tool for mammal biodiversity surveys and has the potential to detect a broader range of species than more commonly used methods.     

贵州赤水桫椤国家级自然保护区鸟兽多样性红外相机初步监测

红外相机监测是了解野生动物多样性和威胁因素的重要手段。本研究采用网格法和分层抽样调查法, 在贵州赤水桫椤国家级自然保护区内选取20个监测位点布设红外相机, 对区内鸟兽物种多样性进行监测。2015年8月至2017年8月, 红外相机累计工作6,370个工作日, 共拍摄45,953张照片, 独立有效照片1,936张。准确鉴定出兽类4目8科19种, 鸟类4目11科28种, 其中, 国家II级重点保护野生动物7种。相对丰富度指数(RAI)排前五位的兽类依次是毛冠鹿(Elaphodus cephalophus)、鼬獾(Melogale moschata)、藏酋猴(Macaca thibetana)、小麂(Muntiacus reevesi)和野猪(Sus scrofa); 鸟类依次是紫啸鸫(Myophonus caeruleus)、红腹角雉(Tragopan temminckii)、灰胸竹鸡(Bambusicola thoracicus)、黑喉噪鹛(Garrulax chinensis)和棕颈钩嘴鹛(Pomatorhinus ruficollis)。物种积累曲线结果表明, 兽类稀疏化曲线在300天后趋于稳定, 表明监测取样已较充分, 而鸟类监测物种数随时间积累依旧保持增长趋势。     

Molecular profiling of nematode associates with Rhynchophorus ferrugineus in southern Italy

A survey of nematodes associated with the red palm weevil Rhynchophorus ferrugineus was conducted in southern Italy in 2015 and 2016 in order to create a species inventory and obtain data about nematode biodiversity. A total of 70 insect samples (pupae and adults) were collected from infested Phoenix canariensis, Phoenix dactylifera, and Chamaerops humilis palms in three Italian Regions: sampling took place at 11 locations in Apulia, 1 in Basilicata, and 1 in Sardinia regions. Individual insects were dissected to determine nematode presence, and different nematode species were also recovered from red palm weevil cocoons collected at the sites in Apulia. Individual nematodes were molecularly identified by sequencing the ITS, D2‐D3 expansion domains of the 28SrRNA gene and the mitochondrial COI and inferring the phylogenetic relationships. The insect‐associated nematofauna identified belonged to the families Rhabditidae, Cephalobidae, and Diplogastridae. Just two nematode species, Teratorhabditis synpapillata and Mononchoides macrospiculum, were always found in association with adult insects and cocoons taken from all sampling sites. This paper reports on the biodiversity of the nematodes associated with R. ferrugineus and on current knowledge of the specific habitat of specialized and divergent entomophilic nematodes.     

Bloodlines: mammals,leeches, and conservation in southern Asia

Southern Asia is a biodiversity hotspot both for terrestrial mammals and for leeches. Many small-mammal groups are under-studied in this region, while other mammals are of known conservation concern. In addition to standard methods for surveying mammals, it has recently been demonstrated that residual bloodmeals within leeches can be sequenced to find mammals in a given area. While these invertebrate-parasite-derived DNA (iDNA) methods are promising, most of the leech species utilized for this type of survey remain unevaluated, notwithstanding that their diversity varies substantially. Here we examine approximately 750 individual leech specimens in the genus Haemadipsa across a large range in southern Asia (Bangladesh, Cambodia, and China), specifically reviewing the diversity of mammals they feed on and their own genetic structuring. Leeches were found to feed on a considerable variety of mammals, corroborating prior studies. Additionally, leeches were found to have fed both on bats and on birds, neither of which has previously been recorded with this method. The genetic structuring of the leeches themselves revealed 15 distinct clades of which only two precisely corresponded to previously characterized species, indicating that much work is needed to finalize classifications in this genus. Most importantly, with regards to mammal conservation, leeches in these clades appear to feed on a broad range of mammals.     

Blow flies as urban wildlife sensors

Wildlife detection in urban areas is very challenging. Conventional monitoring techniques such as direct observation are faced with the limitation that urban wildlife is extremely elusive. It was recently shown that invertebrate‐derived DNA (iDNA) can be used to assess wildlife diversity in tropical rainforests. Flies, which are ubiquitous and very abundant in most cities, may also be used to detect wildlife in urban areas. In urban ecosystems, however, overwhelming quantities of domestic mammal DNA could completely mask the presence of wild mammal DNA. To test whether urban wild mammals can be detected using fly iDNA, we performed DNA metabarcoding of pools of flies captured in Berlin, Germany, using three combinations of blocking primers. Our results show that domestic animal sequences are, as expected, very dominant in urban environments. Nevertheless, wild mammal sequences can often be retrieved, although they usually only represent a minor fraction of the sequence reads. Fly iDNA metabarcoding is therefore a viable approach for quick scans of urban wildlife diversity. Interestingly, our study also shows that blocking primers can interact with each other in ways that affect the outcome of metabarcoding. We conclude that the use of complex combinations of blocking primers, although potentially powerful, should be carefully planned when designing experiments.     

福建省戴云山野生哺乳动物和鸟类红外相机监测

2017年2月至2018年3月, 我们在福建省德化县戴云山国家级自然保护区和德化石牛山森林公园内设置红外相机监测位点60个, 调查戴云山地区野生哺乳动物和鸟类生物多样性。本次调查累计19,924个相机工作日, 拍摄到独立有效照片3,499张, 可准确鉴定哺乳动物4目10科17属18种, 鸟类5目11科21属24种, 家畜3种。其中, 国家I级重点保护野生动物2种, 国家II级重点保护野生动物5种, 且白颈长尾雉(Syrmaticus ellioti)为戴云山自然保护区新记录种。在野生哺乳动物中, 相对多度指数最高的前5种依次为小麂(Muntiacus reevesi)、野猪(Sus scrofa)、赤麂(Muntiacus vaginalis)、赤腹松鼠(Callosciurus erythraeus)、猪獾(Arctonyx collaris); 在鸟类中, 相对多度指数最高的前5种依次为白鹇(Lophura nythemera)、紫啸鸫(Myophonus caeruleus)、黑领噪鹛(Garrulax pectoralis)、白眉山鹧鸪(Arborophila gingica)、灰胸竹鸡(Bambusicola thoracica)。此外, 红外相机还拍摄到大量的家畜及人类活动照片, 显示区内存在较强的人为活动干扰。本次调查结果提供了较为全面的戴云山区哺乳动物和鸟类的本底信息, 填补了闽中地区大中型哺乳动物观测的空白, 为后续的保护管理和长期监测工作建立了基础。     

大熊猫国家公园的地栖大中型鸟兽多样性现状: 基于红外相机数据的分析

生物多样性监测是国家公园保护的核心基础。大熊猫国家公园是我国首批5个国家公园之一, 系统的保护规划与有效的管理行动均有赖于对区内生物多样性本底、现状与动态的深入了解。为了解大熊猫国家公园范围内兽类与鸟类多样性本底与现状, 本研究系统检索了该区域内2005-2020年基于红外相机调查技术的野生动物研究论文、项目报告以及新闻报道, 并对区内原有保护地的红外相机监测历史与结果进行了问卷调查。结果表明, 2005-2020年期间, 在大熊猫国家公园范围内51个保护地的红外相机调查与监测中, 共记录到分属6目22科55属的71种野生兽类与分属13目45科132属的232种野生鸟类。在国家公园所覆盖的秦岭、岷山、邛崃山、相岭4大山系中, 邛崃和岷山记录到的大中型地栖鸟兽物种多样性最高(均为兽类40种, 鸟类12种), 相岭最低(兽类25种, 鸟类7种)。单个保护地中记录到的大中型地栖鸟兽物种数量与保护地面积、红外相机有效工作日及相机位点的海拔跨度均呈正相关, 国家级保护地中记录到的物种数(28 ± 8.3, mean ± SD)显著高于省级保护地(19 ± 8.9)。在大熊猫国家公园内共记录到猫科与犬科的4种大型食肉动物, 即豹(Panthera pardus)、雪豹(P. uncia)、狼(Canis lupus)和豺(Cuon alpinus), 主要来自于秦岭山系和邛崃山系, 而国家公园内的岷山山系则没有记录到大型食肉动物, 相岭山系中仅有1次狼的记录。本研究结果显示, 大熊猫国家公园内前期已经建立起的自然保护地网络与红外相机监测体系已积累大量区内野生兽类与鸟类的基础数据, 为国家公园的试点与建设提供了生物多样性编目与监测方面的可靠本底。在这些前期工作的基础上, 大熊猫国家公园应进一步规划、建设标准化的野生动物监测体系, 为今后国家公园的管理决策、成效评估提供坚实的科学支撑。     

Targeted detection of mammalian species using carrion fly‐derived DNA

DNA analysis from carrion flies (iDNA analysis) has recently been promoted as a powerful tool for cost‐ and time‐efficient monitoring of wildlife. While originally applied to identify any mammalian species present in an area, it should also allow for targeted detection of species and individuals. Using carrion flies captured in the Taï National Park, Côte d'Ivoire, we assessed this possibility by (i) screening carrion fly DNA extracts with nonspecific and species‐specific PCR systems, respectively, targeting mitochondrial DNA (mtDNA) fragments of any mammal or of Jentink's duiker (Cephalophus jentinki), three colobine monkeys (subfamily Colobinae) and sooty mangabey (Cercocebus atys); and (ii) genotyping carrion fly extracts containing sooty mangabey mtDNA. In comparison with the nonspecific PCR assay, the use of specific PCRs increased the frequency of detection of target species up to threefold. Detection rates partially reflected relative abundances of target species in the area. Amplification of seven microsatellite loci from carrion flies positive for sooty mangabey mtDNA yielded an average PCR success of 46%, showing that the identification of individuals is, to some extent, possible. Regression analysis of microsatellite PCR success and mtDNA concentration revealed that, among all carrion flies analysed for this study, 1% contained amounts of mammal mtDNA sufficient to attempt genotyping with potentially high success. We conclude that carrion fly‐derived DNA analysis represents a promising tool for targeted monitoring of mammals in their natural habitat.     

Behavioural trade-offs in response to external stimuli: time allocation of an Arctic ungulate during varying intensities of harassment by parasitic flies

1. Macroparasites may be a major factor shaping animal behaviour. Tundra ecosystems inhabited by caribou and reindeer (Rangifer tarandus) are known for large concentrations of ectoparasites including mosquitoes (Culicidae) and black flies (Simuliidae), as well as endoparasitic oestrid flies (Oestridae). 2. Increased intensity and duration of insect harassment because of climatic warming is hypothesized as a potential factor in recent declines of Rangifer across the circumpolar north. Although there is a well-observed relationship between insect harassment and caribou/reindeer behaviour, the influence of ecto- relative to endoparasitic species is unclear. Climatic changes may favour the activity patterns, distribution or abundance of certain insect species; thus, understanding differential effects on the behaviour of Rangifer is important. 3. We recorded caribou behaviour using group scan and focal sampling methods, while simultaneously trapping insects and recording weather conditions on the postcalving/summer range of the Bathurst barren-ground caribou herd in Northwest Territories and Nunavut, Canada, during 2007-2009. 4. We developed statistical model sets representing hypotheses about the effects of insects, weather, habitat/location, and date/time on caribou behaviour. We used multinomial logistic regression models to explore factors affecting the relative dominance of behaviour types within groups of caribou and fractional multinomial logistic regression models to determine factors influencing time allocation by individual caribou. We examined changes in feeding intensity using fractional logistic regression. 5. Relative dominance of insect avoidance behaviour within caribou groups and time allocation to insect avoidance by individual caribou increased when oestrid flies were present or black flies were active at moderate-high levels. Mosquito activity had relatively little effect on caribou behaviour. Time spent feeding was reduced by the greatest degree when all three insect types were present in combination. Feeding intensity was influenced to a greater extent by the accumulation of growing degree days over the course of the postcalving/summer season than by insect activity. Changes in Arctic systems that increase the activity/abundance of ecto- and endoparasites could have implications for the productivity of Rangifer populations.     

Bias in freshwater biodiversity sampling: the case of Iberian water beetles

Extensive distributional data bases are key tools in ecological research, and good-quality data are required to provide reliable conservation strategies and an understanding of biodiversity patterns and processes. Although the evaluation of data bases requires the incorporation of estimates of sampling effort and bias, no studies have focused on these aspects for freshwater biodiversity data. We used here a comprehensive data base of water beetles from the Iberian Peninsula and the Balearic Islands, and examine whether these data provide an unbiased, reliable picture of their diversity and distribution in the study area. Based on theoretical estimates using the Clench function on the accumulated number of records as a surrogate of sampling effort, about a quarter of the Iberian and Balearic 50 × 50 km Universal Transverse Mercator grid cells can be considered well prospected, with more than 70% of the theoretical species richness actually recorded. These well-surveyed cells are not evenly distributed across biogeographical and physicoclimatic subregions, reflecting some geographical bias in the distribution of sampling effort. Our results suggest that recording was skewed by relatively simple variables affecting collector activity, such as the perceived 'attractiveness' of mountainous landscapes and protected areas with recently described species, and accessibility of sampling sites (distance from main research centres). We emphasize the importance of these evaluation exercises, which are useful to locate areas needed of further sampling as well as to identify potential biases in the distribution of current biodiversity patterns.     

利用红外相机技术对广东车八岭国家级自然保护区兽类和鸟类资源的初步调查

为深入了解广东车八岭国家级自然保护区野生动物资源现状,于2014年9月至2016年11月在保护区内布设101个红外相机调查位点,累计11 399相机日。共获得有动物的独立有效照片2 549张,鉴定兽类和鸟类有9目19科43种(兽类13种,鸟类30种),包括6种国家Ⅱ级重点保护野生动物：斑灵狸(Prionodon pardicolor)、中华鬣羚(Capricornis milneedwardsii)、白鹇(Lophura nycthemera)、仙八色鸫(Pitta nympha)、褐翅鸦鹃(Centropus sinensis)和松雀鹰(Accipiter virgatus)。红腿长吻松鼠(Dremomys pyrrhomerus)、小泡巨鼠(Leopoldamys edwardsi)、仙八色鸫、橙头地鸫(Zoothera citrina)和白冠燕尾(Enicurus leschenaultia)为保护区的新纪录物种。相对丰富度指数较高的兽类有红腿长吻松鼠、赤麂(Muntiacus vaginalis)和野猪(Sus scrofa),相对丰富度指数较高的鸟类有白鹇和黑领噪鹛(Garrulax pectoralis)。此外,鸟兽物种数呈现一定的海拔分布趋势,以海拔450~600 m之间的物种多样性最高,但差异不显著。与南岭山脉邻近保护区相比,就已发表的红外相机监测结果而言,车八岭的鸟类多样性最高,而南岭保护区的兽类多样性较高,鸟兽的不同分布可能与保护区亚热带常绿阔叶林的面积和生态系统的完整性有关。本次初步调查掌握了车八岭保护区的鸟兽多样性数据,为以后该保护区及整个南岭山脉野生动物资源长期监测积累了基础资料。     

中国昆虫染色体研究现状与展望

简要叙述了中国昆虫染色体研究的现状,包括研究涉及的昆虫类群、核型分析结果、研究方法和手段、染色体有丝分裂、减数分裂、染色体形态变异、结构变异和数量变异等。我国学者对昆虫染色体研究从20世纪30年代开始,迄今已对蜉蝣目、蜚蠊目、直翅目、半翅目、同翅目、鞘翅目、鳞翅目、双翅目、蚤目和膜翅目等10目481种昆虫的核型进行了研究,主要集中在蝗虫、蝽类、蚜虫、蚕类、果蝇、摇蚊及实蝇等。在染色体行为方面的研究主要有：蚕类和果蝇等有丝分裂;蜚蠊类、蝗类、蝽类和蚕类的减数分裂及性别决定机制;部分昆虫的联会复合体分析。染色体结构变异的研究主要集中在果蝇和蚊类昆虫的唾腺染色体;果蝇的B染色体;蚕类和蚊类昆虫染色体的缺失、易位和倒位等变异;蚕蛾类的数量变异。研究结果多应用于昆虫系统分类和进化的探讨,揭示昆虫遗传与变异规律。通过与国外研究成果对比,提出昆虫染色体研究的必要性,并对我国未来昆虫染色体研究进行了展望。     

Monitoring mammals in the Caxiuanã National Forest,Brazil – First results from the Tropical Ecology,Assessment and Monitoring (TEAM) program

The need for long-term biodiversity monitoring using standardized protocols led to the creation of the Tropical Ecology, Assessment and Monitoring (TEAM) initiative. At some 50 field stations in tropical forests around the world, TEAM will monitor various taxa such as ants, birds, butterflies, medium and large terrestrial mammals, primates, litter fall, and trees, as well as landscape change in nine tropical biodiversity hotspots and three tropical wilderness areas. The TEAM terrestrial mammal program calls for using a grid of camera phototraps to monitor long-term trends in densities and occupancy rates of species that can or cannot be uniquely identified, respectively. We describe the TEAM camera phototrapping program and provide results for the first TEAM site–Caxiuanã National Forest in northern Brazil. An intensive one year camera trapping effort was carried out to determine which months were most suitable for long-term monitoring. Fifteen species of medium and large terrestrial mammals and two large birds were recorded, including three xenarthrans, five carnivores, one perissodactyle, three artiodactyles, two rodents, and one marsupial. The medium and large terrestrial mammal diversity was well represented during two consecutive wet and dry months, respectively. We also recorded activity patterns for all species photographed by our camera traps more than 10 times.     

Ground dwelling mammal response to fire: A case study from Monga National Park after the 2019/2020 Clyde Mountain fire

Ground dwelling mammal communities are documented six months before and after the Clyde Mountain Wildfire of 2019/2020 in Monga National Park. Across eight sites before fire, approximately 12 ground dwelling mammal species were recorded. Survey effort post-fire increased to 40 sites, spanning three fire severity classes (low, moderate and extreme), revealed 16 ground dwelling mammal species. Species consist of small, medium and large native (one threatened species) and introduced mammals, though consistent with previous findings of ground dwelling mammal diversity in the area. Overall a greater number of species were found in low, compared to moderate and severe fire severity classes. Recovery and detection of mammals occurred in a shorter time period, again, in sites that experienced low, followed by moderate and extreme fire severity.     

Investigation of the bacterial communities associated with females of Lutzomyia sand fly species from South america

Phlebotomine sand flies are vectors of Leishmania that are acquired by the female sand fly during blood feeding on an infected mammal. Leishmania parasites develop exclusively in the gut lumen during their residence in the insect before transmission to a suitable host during the next blood feed. Female phlebotomine sand flies are blood feeding insects but their life style of visiting plants as well as animals, and the propensity for larvae to feed on detritus including animal faeces means that the insect host and parasite are exposed to a range of microorganisms. Thus, the sand fly microbiota may interact with the developing Leishmania population in the gut. The aim of the study was to investigate and identify the bacterial diversity associated with wild adult female Lutzomyia sand flies from different geographical locations in the New World. The bacterial phylotypes recovered from 16S rRNA gene clone libraries obtained from wild caught adult female Lutzomyia sand flies were estimated from direct band sequencing after denaturing gradient gel electrophoresis of bacterial 16 rRNA gene fragments. These results confirm that the Lutzomyia sand flies contain a limited array of bacterial phylotypes across several divisions. Several potential plant-related bacterial sequences were detected including Erwinia sp. and putative Ralstonia sp. from two sand fly species sampled from 3 geographically separated regions in Brazil. Identification of putative human pathogens also demonstrated the potential for sand flies to act as vectors of bacterial pathogens of medical importance in addition to their role in Leishmania transmission.     

Size‐dependent insect flight energetics at different sugar supplies

Under most circumstances, large body size confers a higher fitness and is positively selected, whereas selection against large size is empirically poorly documented. Physiologically, according to the ¾ power law, larger animals have lower relative but higher absolute energy demands, such that large body size may become disadvantageous, particularly under fast locomotion in food‐limited environments. After a period of initial feeding on different sugar concentrations, we investigated size‐dependent energy content (reserves) at baseline and of females unflown (i.e. resting) or flown for 18 h in two (replicate) insect species: the yellow dung fly Scathophaga stercoraria and the yellow fever mosquito Aedes aegypti. Tethered adults of various sizes were tested in a flight mill. In both species, teneral glycogen, sugar, and lipid content increased with sugar availability, and isometrically or even hyper‐allometrically (slope > 1) with body size. Activity treatment also revealed the expected consumption effects. Both species increased their flight distance with sugar supply, although only larger mosquitoes flew longer. Crucially, larger females of both species disproportionately exhausted more glycogen and sugars (but not lipid) during flight. The mosquitoes appeared to adjust their flight more finely to their size‐dependent energy reserves at all sugar availabilities, whereas, in the dung flies, size‐dependent energy demands were detectable only with a low but not with an overly high sugar supply. Although we found a greater absolute and relative locomotory energy demand for the larger flies, which is in agreement with interspecific patterns in insects, this was (more than) compensated by their greater baseline energy reserves, resulting in the greater net flying capacity of larger individuals. Consequently, we found no evidence for energetic mechanisms limiting the performance of large flying insects under food limitation. The differences between the two species presumably relate to mosquitoes inherently being long distance flyers and dung flies being short distance flyers. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ●● , ●●–●●.     

Effects of peat swamp logging and agricultural expansion on species richness of native mammals in Peninsular Malaysia

The biodiversity inhabiting tropical peat swamp forests in Southeast Asia is currently threatened by commercial logging and agricultural expansion. The occurrence of mammals in such forests is often poorly known and the factors influencing their occurrence in these ecosystems have rarely been quantified. We aim to determine the key habitat and landscape drivers of mammal species richness in fragmented peat swamp reserves. We conducted camera trap surveys in the North Selangor Peat Swamp Forest (NSPSF), the last remaining area of peat swamp forest on the west coast of Peninsular Malaysia. We also measured vegetation structure and landscape metrics to investigate the relationship between these factors and mammal richness. We recorded a total of 16 mammal species from 45 sampling sites using camera traps located in peat swamp forest reserves. Mammal species richness increased with the abundance of large trees and distance away from roads. Species richness decreased significantly with canopy cover and height, the abundance of fallen trees, the abundance of forest palms and saplings, distance away from rivers, and a measure of landscape compositional heterogeneity. Our findings underscore the high conservation value of logged peat swamp forests and the urgent need to halt further deforestation. We recommend: (1) protecting riparian habitat; (2) avoiding further forest conversion particularly areas supporting large trees into oil palm plantations; and (3) limiting road development within and around the NSPSF.     

Host specificity and interaction networks of insects feeding on seeds and fruits in tropical rainforests

In the tropics, antagonistic seed predation networks may have different properties than mutualistic pollination and seed dispersal networks, but the former have been considerably less studied. We tested whether the structure of antagonistic tripartite networks composed of host plants, insects developing within seeds and fruits, and their insect parasitoids could be predicted from plant phylogenetic distance and plant traits. We considered subsets of the networks (‘subnetworks') at three rainforest locations (Panama, Thailand, Papua New Guinea), based on insect families, plant families or plant functional groups. We recorded 3197 interactions and observed a low percentage of realized interactions, especially in Panama, where insect host specificity was higher than in Thailand or New Guinea. Several factors may explain this, including insect faunal composition, incidence of dry fruits, high fruit production and high occurrence of Fabaceae at the Panamanian site. Host specificity was greater among seed-eaters than pulp-eaters and for insects feeding on dry fruits as opposed to insects feeding on fleshy fruits. Plant species richness within plant families did not influence insect host specificity, but site characteristics may be important in this regard. Most subnetworks were extremely specialized, such as those including Tortricidae and Bruchinae in Panama. Plant phylogenetic distance, plant basal area and plant traits (fruit length, number of seeds per fruit) had important effects on several network statistics in regressions weighted by sampling effort. A path analysis revealed a weak direct influence of plant phylogenetic distance on parasitoid richness, indicating limited support for the ‘nasty host hypothesis'. Our study emphasizes the duality between seed dispersal and seed predation networks in the tropics, as key plant species differ and host specificity tends to be low in the former and higher in the latter. This underlines the need to study both types of networks for sound practices of forest regeneration and conservation.