Effect of pyrimidine and ribose modifications on the antiviral activity of synthetic polynucleotides

Homo- and copolynucleotides derived from 3-methyluridine, 5,6-dihydrouridine and 2′-azido-2′-deoxyuridine (dUz) were prepared and evaluated for antiviral activity either as single strands or as double strands when complexed with complementary homopolynucleotides. The synthetic materials were not as active as (A)_n · (U)_n or (I)_n · (C)_n in inducing the interferon system. The antiviral activity of (A)_n · (dUz)_n was not affected by treatment with high concentrations of pancreatic RNase A, whereas this activity was totally abolished when (A)_n · (dUz)_n was digested with human serum.     

Toxic Metabolites of an Unidentified Filamentous Fungus Isolated from Zinnia Leaves

Two ribonucleases (RNases) designated RNase I and RNase II were found in Euphausia superba and isolated by (NH₄)₂SO₄ fractionation, 2 cycles of CM-cellulose chromatography and gel filtration on Sephadex G-100. This procedure resulted in a 2,116-fold purification of RNase I and a 130-fold purification of RNase II. The molecular weight of both purified enzymes was estimated by gel filtration to be 31,500. The isoelectric points were 6.0 (RNase I) and 7.0 (RNase II). Each enzyme hydrolyzed poly A-U, poly U but did not degrade poly G, poly C and DNA. Both enzymes were classified as endonuclease from the hydrolysis product of yeast RNA and poly A. The enzymes were located mainly in the cardiac and pyloric portion of the stomach.     

Studies on interaction of oligopeptides with sodium dodecyl sulfate: Stopped-flow kinetics of chemical modification of tryptophan residues withN-bromosuccinimide

The stopped-flow kinetics of the reaction between oligopeptides containing tryptophan residues andN-bromosuccinimide (NBS) were studied in 50 mM sodium phosphate buffer (pH 7.0) containing sodium dodecyl sulfate (SDS). Decreases in the reaction rates attributable to the interaction between oligopeptides and SDS were observed, and oligopeptides studied were classified into types I and II on the basis of the interaction modes. Type I oligopeptides were dissolved in SDS micelles; type II oligopeptides interacted cooperatively with SDS monomers. The manner of interaction between SDS and oligopeptides of type II could be interpreted by a simple equilibrium relation: oligopeptide+n·(SDS)=oligopeptide·(SDS) _n .     

Studies on interaction of oligopeptides with sodium dodecyl sulfate: Stopped-flow kinetics of chemical modification of tryptophan residues withN-bromosuccinimide

The stopped-flow kinetics of the reaction between oligopeptides containing tryptophan residues andN-bromosuccinimide (NBS) were studied in 50 mM sodium phosphate buffer (pH 7.0) containing sodium dodecyl sulfate (SDS). Decreases in the reaction rates attributable to the interaction between oligopeptides and SDS were observed, and oligopeptides studied were classified into types I and II on the basis of the interaction modes. Type I oligopeptides were dissolved in SDS micelles; type II oligopeptides interacted cooperatively with SDS monomers. The manner of interaction between SDS and oligopeptides of type II could be interpreted by a simple equilibrium relation: oligopeptide+n·(SDS)=oligopeptide·(SDS) _n .     

Effect of form of iron on nickel deprivation in the rat: Plasma and liver lipids

In two fully-crossed, two-factor, completely randomized experiments, female weanling rats were fed a basal diet (containing about 10 ng of nickel and 2.3 μg of iron/g) supplemented with graded levels of nickel and iron. Iron was supplemented to the diet in experiment 1 at levels of 0, 25, 50, and 100 μg/g as a mixture of 40% FeSO₄·nH₂O and 60% Fe₂(SO₄)₃·nH₂O and in experiment 2 at levels of 0, 12.5, 25, 50, and 100 μg/g as Fe₂(SO₄)₃·nH₂O. In both experiments, nickel was supplemented to the diet at levels of 0, 5, and 50 μg/g as NiCl₂·3H₂O. Regardless of dietary nickel, rats fed no supplemental iron exhibited depressed levels of plasma phospholipids and elevated levels of liver total lipids. Nickel deprivation elevated plasma and liver total lipids in rats fed supplemental ferric sulfate only. When dietary iron was supplied as a ferric-ferrous sulfate mixture, nickel deprivation depressed plasma, and did not affect liver total lipids. However, within each experiment nickel and iron did not interact to affect plasma and liver total lipids or phospholipids. The findings suggest that the effect of dietary nickel on plasma and iver lipids of rats is influenced by the form of dietary iron.     

Effect of form of iron on nickel deprivation in the rat

In three fully crossed, factorially arranged, completely randomized experiments, female weanling rats were fed a basal diet (containing about 10 ng of nickel and 2.3 μg of iron/g) supplemented with graded levels of nickel and iron. Iron was supplemented to the diet in experiment 1 at levels of 0, 25, 50, and 100 μg/g as a mixture of 40% FeSO₄·nH₂O and 60% Fe₂(SO₄)₃·nH₂O; in experiment 2 at levels of 0, 12.5, 25, 50, and 100 μg/g as Fe₂(SO₄)₃·nH₂O; in experiment 3 at levels of 0, 25, and 50 μg/g as either the mixture of ferric-ferrous sulfates, or as ferric sulfate only. Nickel as NiCl₂·3H₂O was supplemented to the diet in experiment 1 at levels of 0, 5, and 50 μg/g; in experiment 2 at levels of 0 and 50 μg/g; and in experiment 3 at levels of 0 and 5 μg/g. Regardless of dietary nickel, rats fed no supplemental iron exhibited depressed iron content and elevated copper, manganese, and zinc contents in the liver. Nickel and iron did not interact to affect iron, manganese, and zinc in liver. Liver copper was inconsistently affected by an interaction between nickel and iron. Nickel deprivation apparently accentuated the elevation of the copper level in livers of severely iron-deficient rats. Experiment 3 showed that the form of dietary iron altered the effect of nickel deprivation on the iron content of the liver. When only ferric sulfate was supplemented to the diet, liver iron content was depressed in nickel-deprived rats. On the other hand, when the ferric-ferrous mixture was supplemented to the diet, nickel deprivation apparently elevated the iron content in the liver. The findings support the views that (1) parameters that are affected by an interaction between nickel and iron are limited in factorially arranged experiments, and (2) the form and level of dietary iron markedly influence the effect of nickel deprivation in the rat.     

Left-handed Z-DNA Helices in Polymers,Restriction Fragments,and Recombinant Plasmids

Abstract

Studies on DNA polymers, restriction fragments, and recombinant plasmids have revealed the following: A) A family of left-handed DNA conformations exists for (dC-dG)_n·(dC-dG)_n. The observation of a particular conformation is dependent on the salt, the salt concentration and dehydrating agent. B) In sodium acetate solutions, (dC-dG)_n·(dC-dG)_n forms left-handed, ψ(+)-condensed structures as detected by Raman spectroscopy and circular dichroism. C) (dT-dG)_n·(dC-dA)_n undergoes a right-to-left-handed transition only when reacted with AAF and at high salt concentrations. D) Transitions observed for polymer DNAs also are observed for restriction fragments containing both (dC-dG)·(dC-dG) and (dT-dG)·(dC-dA) sequences, but the transitions in the fragments generally require higher salt concentrations than observed for the polymers. E) Studies with recombinant plasmids containing (dC-dG) sequences from 10 to 58 bp in length demonstrate that left-handed Z-DNA segments can exist contiguous to B-DNA segments. F) Negative supercoil density (σ≤ ?0.072) is sufficient to convert the (dC-dG) regions in those plasmids into left-handed structures under physiological ionic conditions (200 mM NaCl). G) The favorable free energy contribution of methyla- tion in stabilizing the Z form in fragments and plasmids is approximately offset by the unfavorable free energy contributions of the B/Z junctions. H) S₁ and BAL 31 nucleases recognize aberrant structural features at the confluence of the B and Z regions. I) Detailed mapping of S₁ nuclease cleavage on supercoiled plasmids shows that the nuclease sensitive regions extend over at least five to ten bp. J) Even though the (dT-dG)_n·(dC-dA)_n polymer requires base modification and high salt conditions to undergo the R?L transition, supercoiling (σ ?0.07) can supply enough energy to allow a plasmid containing the intervening sequence of a human fetal globin gene with (dT-dG)·(dC-dA) sequences to undergo a R?L transition.     

Characterization of γ-glutamyltranspeptidase in the liver of the frog: 3. Response to freezing and thawing in the freeze-tolerant wood frog Rana sylvatica

The freeze tolerant wood frog Rana sylvatica was studied to determine the impact of the freezing and thawing of this frog on the activity of γ-glutamyltranspeptidase in the liver. On exposure to ?2·5°C, for 1, 12 and 24 h, frogs were found to be cool, covered with ice crystals and frozen, respectively. Thawing for 24 h at 4°C recovered the frogs completely. A 45 per cent decrease in the liver weight: body weight ratio was notable after 1 h at ?2·5°C, suggestive of an early hepatic capacitance response. A glycemic response to freezing was observed: blood glucose levels exhibited a 55 per cent decrease after 1 h at ?2·5°C on cooling; a 10·5-fold increase after 12 h at ?2·5°C on the initiation of freezing; and a 22-fold increase after 24 h at ?2·5°C in the fully frozen state. Blood glucose levels remained elevated four-fold in the thawed state. Plasma insulin levels were increased twofold in the frozen state and 1·8-fold in the thawed state, while plasma ketone levels were increased 1·8-fold in the frozen state and 1·5-fold in the thawed state. Plasma total T₃ levels were decreased by 22 per cent in the frozen state and normalized on thawing. In homogenates and plasma membranes isolated from the livers of Rana sylvatica, the activity of γ-glutamyltranspeptidase was found to be elevated at all stages of the freeze–thaw process. After 1, 12 and 24 h at ?2·5°C, activities were increased 2·5-, 2·3-, 2·4-fold respectively in the homogenates and 2·5-, 2·2-, 2·4-fold respectively in the plasma membranes. After thawing, activities were still increased 1·9-fold in both homogenates and plasma membranes. In homogenates prepared from the kidneys of Rana sylvatica, the activity of γ-glutamyltranspeptidase was increased 1·4-fold after 1 h at ?2·5°C after which it returned to normal. The role of thyroid hormone in producing the increase in γ-glutamyltranspeptidase in the liver of Rana sylvatica in response to freezing is discussed as is the significance of the enzyme increase in terms of hepatic cytoprotection and freeze tolerance.     

Studies on metal carboxylates. VIII. Reactions of acetylacetonates of the first row transition elements with pyridine-2,6-dicarboxylic acid

The acetylacetonates VO(acac)₂, M(acac)₃, where M = V, Mn or Fe and [M′(acac)₂]_n, where M′ = Co, Ni or Cu, have been reacted with pyridine-2,6-dicarboxylic acid (dipicH₂) in acetone to afford the complexes VO(dipic)·2H₂O, M(acac)(dipic)·xH₂O [M = V, Mn or Fe and x = 1 or 0] and M₂(dipic) (dipicH)₂·yH₂O [M = Co, Ni or Cu and y = 2 or 0]. The cobalt(II) and nickel(II) complexes are converted to polymeric [M(dipic)]_n in ethanol and all three complexes formulated as M₂(dipic)(dipicH)₂ react with 2,2′2″-terpyridyl to yield M(dipic)(terpy)·3H₂O. The vanadium(III) complex V(acac)(dipic) is oxidized to VO(dipic)·4H₂O in aqueous solution via the vanadium(III) intermediate V(OH)(dipic)·2H₂O. Tentative structural conclusions are drawn for certain of these new complexes based upon room temperature spectral and magnetic measurements. The characterization of these complexes has included selected studies of their X-ray photoelectron spectra.     

Synthesis,structure and a fourier transform infrared study of Pt(II), Cu(II), and Mg(II) Complexes with xanthosine-5′-monophosphate

The reaction of xanthosine-5′'-monophosphate disodium salt (5′-XMPNa₂) with Pt(II), Cu(II) and Mg(II) ions produced compounds of the type cis- and trans-Pt(NH₃)₂(XMPNa₂)_nCl₂·xH₂O, where n = 1 or 2; Pt(XMPNa₂)_nCl₂·xH₂O, where n = 1-4, x = 1,4 & 6; Cu(XMP)·6H₂O and Mg(XMP)·xH₂O, where x = 9 or 4. In the complexes synthesized here at neutral pH values, the nucleotide binds through the N_7-atom of the purine ring system, whereas for Cu(II) and Mg(II) compounds obtained at pH = 4 a direct metal-phosphate interaction as well as N_τ bonding is proposed.     

Microsolvation of aminoethanol: a study using DFT combined with QTAIM

The microsolvation of aminoethanol (AE) with one, two, three or four water molecules was investigated using a density functional theory (DFT) approach. Quantum theory of atoms in molecules (QTAIM) analyses were employed to elucidate the hydrogen-bonding characteristics of AE–(H₂O) _n (n = 1–4) complexes. The results showed that AE tends to break its intramolecular OH^AE···N^AE hydrogen bond (H-bond) upon microsolvation and form intermolecular H-bonds with water molecules, while complexes that retain the intramolecular OH^AE···N^AE H-bond show reduced stabilities. The intermolecular H-bond that forms between the nitrogen atom of AE and the hydroxyl of a water molecule is the strongest one for the most stable AE–(H₂O) _n (n = 1–4) complexes, and as n increases from 1 to 4 they grow stronger. The partial covalent character of this H-bond was confirmed by QTAIM analyses. Many-body interaction analysis showed that the relaxation energies and two- and three-body energies make significant contributions to the binding energies of the complexes.     

Chromatographic resolution of two DNA polymerase activities from bloodstream forms of Trypanosomabrucei: Differential responses to exogenous polyamine addition

A single peak of DNA polymerase activity from extracts of $\text{T.}\text{brucei}$, obtained by DEAE-cellulose and phosphocellulose ion-exchange chromatography, was resolved into two peaks differing in KCl concentration necessary to elute them from a DNA-agarose column. Peak I (eluting at 0.2 M KCl) and Peak II (eluting at 0.4 M KCl), differed in response to increasing KCl concentrations, although both functioned optimally with Mg²⁺ as divalent cation when DNA synthesis was directed either by activated DNA or poly (dC)·(dG)_12–18. Due to the potential significance of polyamines in the metabolism of $\text{T.}\text{brucei}$, the effect of exogenous polyamine on rates of DNA synthesis by the peak I and II enzymes was compared with that of murine DNA polymerase alpha. Only the peak I enzyme was significantly stimulated (up to 4-fold) by the biologically active polyamines spermine and spermidine at physiological concentrations. The response of the peak I enzyme resembled that of the alpha polymerase. This result suggests a possible functional difference between peak I and II enzymes, as well as a potential target site for trypanocidal drug development.     

Double-stranded ribonuclease activities from HeLa cell nuclei

Degradation of poly(I)·[³H] poly(C) to acid-soluble products is observed with a nuclear lysate from HeLa cells. Most of the activity is lost after Sephadex G-100 chromatography, but can be regained by mixing two fractions, FI and FII, that elute separately. FII has been further purified by chromatography on DEAE-cellulose and phosphocellulose, and is then totally dependent on FI for any activity with poly(I)·poly(C). However, FII retains some activity with poly(C); and in the presence of FI, it can be substituted by purified $\text{E. coli}$ RNase II for the degradation of poly(I)·poly(C). Thus, at least two macromolecular components participate in the bulk degradation of poly(I) poly(C) in HeLa nuclear lysates, and one of them may be a single-stranded exonuclease.     

Receptor progesterone complex in the nuclear fraction of the rat uterus: demonstration by 3H-progesterone exchange

We have previously shown that ³H-estradiol exchange can be used to measure the quantity of estrogen receptor complex in the nuclear fraction of target tissue cells. This method has been modified for the measurement of the progesterone receptor complex (R_n·P) in the nuclear fraction of uterine cells. Nuclear fractions were incubated for 5 hrs. at 15°C in the presence of varying concentrations of ³H-progesterone (³H-P) with or without a 250-fold excess of non-labeled progesterone (P). R_n·P was determined by subtracting the ³H-P bound in the presence of excess P (non-specific binding) from ³H-P bound in the absence of excess P (total binding). All R_n·P studies were done in adult castrate female rats that had received estradiol benzoate (0.4 mg) one week before use. The quantity of R_n·P increased in the uterine nuclear fractions by 280% 30 min. after injection of 5 mg of P. R_n·P was not increased in muscle or fat pad by this treatment. Injections of corticosterone (B), cortisol (F), dexamethasone (Dx) or testosterone (T) failed to increase R_n·P. The exchange reaction was specific for P; B, F, Dx or T did not compete. These results demonstrate the existence of a low capacity, high affinity, stereospecific progesterone binding site in the nuclear fraction of the uterus.     

Anticandidal cytotoxicity,antitumor activities,and purified cell wall modulation by novel Schiff base ligand and its metal (II) complexes against some pathogenic yeasts

The preparation of metal (II) complexes [CoCl₂·6H₂O, Ni(CH₃COO)₂·4H₂O, Cu(CH₃COO)₂·2H₂O, and Zn (CH3COO)₂ ·2H₂O] with 2[N-(cinnamlidene) amino]-5-nitro phenol as a novel ligands and their biological evaluation against candida species was studied. The inhibitory effects of the tested metal complexes were tested against six pathogenic yeasts (Candida albicans, C. fructus, C. glabrata, C. oleophila, C. parapsilosis, and C. tropicalis). The effect of the most efficient metal complex (Zn(II) complex) was more pronounced at 1.25 μg/ml, while Ni(II) complex was exhibited the least suppressive effect. Co(II) and Zn(II) complexes act as potential antitumor agents, while Zn(II) complex has shown promising cytotoxic activity with slow candidal respiration rate. Addition of Zn(II) complex leading to suppression of cell wall components in all candidal cells accompanied with leaking out of amino acids. Purification of the cell wall mannoprotein of C. glabrata treated with Zn(II) complex was established, resulting one pure fissured protein peak. Cell wall protein modulation was showed by appearance of two new protein bands with molecular weights of 72 and 39 KDa in C. glabrata cells treated with Zn(II) complex compared with one pure protein band 55.6 KDa in the non treated yeast cell.     

Catalytic Properties of Two Pyruvate Kinase Isoforms in Nordic Krill,Meganyctiphanes norvegica,With Respect to Seasonal Temperature Adaptation

Two isoforms of pyruvate kinase (PK I and PK II) were partly purified and characterized from the Nordic krill Meganyctiphanes norvegica. Both PK variants were present in summer and winter specimens with a tissue specificity in abdominal muscle (PK I) and cephalothorax (PK II). Obvious differences were found in chromatographic and kinetic characteristics. Enzymatic adaptations to low temperatures were found in PK I only, whereas PK II did not contribute to seasonal temperature adaptation. In winter specimens, the activation energy of PK I decreased significantly from 53.2 ± 1.5 to 50.2 ± 1.2 kJ·mol⁻¹. The affinity of PK I to phosphoenol-pyruvate was higher in winter (K_M = 0.024 ± 0.002 mmol·l⁻¹) compared to summer (K_M = 0.033 ± 0.003 mmol·l⁻¹). Both effects lead to an increased efficiency of this enzyme isoform in the cold. In contrast, K_M values of PK II showed no significant differences between summer (K_M = 0.181 ± 0.014 mmol·l⁻¹) and winter specimens (K_M = 0.193 ± 0.015 mmol·l⁻¹). The effects of cooperativity remained unchanged during the seasons with approximate values of n_Hill = 1.0 (PK I) and 1.5 (PK II). Fructose-1,6-bis-phosphate affected only PK II by shifting sigmoidal kinetics to hyperbolic curves resulting in a decrease of K_M to 0.027 mmol·l⁻¹. Further effectors were tested showing an inhibiting effect of oxalate on both isoforms with a reduction to 20% and 50% in PK I and PK II, respectively. Presumably, the ecophysiological effect of the capacity to regulate muscle PK is related to the necessity to increase motility during vertical migration and phases of feeding activity.     

Complexes of copper and gold with phosphorus-sulfur bidentate ligands

Copper(II) salts react with the bidentate hybrid ligands 1-thiophenyl-2-diphenylphosphinoethane (PSPh) and 1-thioethyl-2-diphehylphosphinoethane (PSEt) to yield copper(I) and/of copper(II) complexes of composition [Cu(PSR)₂]Y andCu- (OPSR)₂] Y₂(Y=C10₄, BF₄; OPSR=phosphinooxide of the PSR ligand). A mixed-valence species cu″?(OPSEt)₂Y₂·Cu′(PSR)₂Y has been isolated. The interaction of the PSR ligands with silver(I) and gold(III) salts has been also studied and gold(I) derivatives of the type [AuX(PSR)] have been isolated.     

Synthesis and studies of some bivalent transition metal complexes with acylhydrazones

Complexes of 3-hydroxy-2-naphthaldehyde benzylhydrazone (H₂nabh) and 3-hydroxy-2-naphthaldehyde salicyloylhydrazone (H₃nash) of the empirical composition M(L2H)·nH₂O [M = manganese(II), iron(II), cobalt(II), nickel(II), copper(II), zinc(II), cadmium(II), mercury(II), L = H₂nabh, H₃nash and n = 0, 1, 2] were prepared and characterized by elemental analyses, magnetic susceptibility, electronic and infrared spectral data. Zinc(II) and cadmium(II) complexes were also studied by ¹³C, ¹H NMR and the Cu(nabh)·H₂O complex by transmission electron microscopy. The complexes are coloured and highly insoluble in common organic solvents. Absence of the original anion in the complexes indicates deprotonation of the ligands (H₂nabh and H₃nash) which bind the metal ions from the OH and the CN groups.     

Synthesis and Structure of a New Copper(II) Coordination Polymer Alternately Bridged by Oxamido and Carboxylate Groups: Evaluation of DNA/BSA Binding and Cytotoxic Activities

A new one‐dimensional (1D) copper(II) coordination polymer {[Cu₂(dmaepox)(dabt)](NO₃)·0.5 H₂O}_n, where H₃dmaepox and dabt denote N‐benzoato‐N′‐(3‐methylaminopropyl)oxamide and 2,2′‐diamino‐4,4′‐bithiazole, respectively, was synthesized and characterized by single‐crystal X‐ray diffraction and other methods. The crystal structure analysis revealed that the two copper(II) ions are bridged alternately by cis‐oxamido and carboxylato groups to form a 1‐D coordination polymer with the corresponding Cu···Cu separations of 5.1946(19) and 5.038(2) Å. There is a three‐dimensional supramolecular structure constructed by hydrogen bonding and π–π stacking interactions in the crystal. The reactivity towards herring sperm DNA (HS‐DNA) and bovine serum albumin (BSA) indicated that the copper(II) polymer can interact with the DNA in the mode of intercalation, and bind to BSA responsible for quenching of tryptophan fluorescence by the static quenching mechanism. The in vitro cytotoxicity suggested that the copper(II) polymer exhibits cytotoxic effects against the selected tumor cell lines.