Microbial attachment to particles in marine and freshwater ecosystems

Scanning electron microscopy observations ofin situ suspended marine and freshwater particles show diverse but similar modes of bacterial and fungal attachment. A survey of Sierra Nevada mountain lakes and pelagic and near-shore waters in the Pacific Ocean indicates that attachment is most noticeable in the near-surface waters where fresh dissolved and particulate input of carbon from phytoplankton and elevated temperatures favor microbial growth. The most common modes of attachment are: adhesive stalk formation, growth on adhesive webs, attachment by the use of pili-like appendages and slimy capsular secretions, and molecular or chemical sorption without the use of visualized structural appendages. Attached microbial growth is accelerated when particulate substrates are supplied, even when they are not rich in organic nutrients. This is the case in the Lake Tahoe basin, where microflora attached to eroded silts can significantly modify the organic carbon and nutrient content of such minerogenous particles.     

Microbial characterization of toluene-degrading denitrifying consortia obtained from terrestrial and marine ecosystems

The degradation characteristics of toluene coupled to nitrate reduction were investigated in enrichment culture and the microbial communities of toluene-degrading denitrifying consortia were characterized by denaturing gradient gel electrophoresis (DGGE) technique. Anaerobic nitrate-reducing bacteria were enriched from oil-contaminated soil samples collected from terrestrial (rice field) and marine (tidal flat) ecosystems. Enriched consortia degraded toluene in the presence of nitrate as a terminal electron acceptor. The degradation rate of toluene was affected by the initial substrate concentration and co-existence of other hydrocarbons. The types of toluene-degrading denitrifying consortia depended on the type of ecosystem. The clone RS-7 obtained from the enriched consortium of the rice field was most closely related to a toluene-degrading and denitrifying bacterium, Azoarcus denitrificians (A. tolulyticus sp. nov.). The clone TS-11 detected in the tidal flat enriched consortium was affiliated to Thauera sp. strain S2 (T. aminoaromatica sp. nov.) that was able to degrade toluene under denitrifying conditions. This indicates that environmental factors greatly influence microbial communities obtained from terrestrial (rice field) and marine (tidal flat) ecosystems.     

Assessing the role of large herbivores in the structuring and functioning of freshwater and marine angiosperm ecosystems

While large herbivores can have strong impacts on terrestrial ecosystems, much less is known of their role in aquatic systems. We reviewed the literature to determine: 1) which large herbivores (> 10 kg) have a (semi‐)aquatic lifestyle and are important consumers of submerged vascular plants, 2) their impact on submerged plant abundance and species composition, and 3) their ecosystem functions. We grouped herbivores according to diet, habitat selection and movement ecology: 1) Fully aquatic species, either resident or migratory (manatees, dugongs, turtles), 2) Semi‐aquatic species that live both in water and on land, either resident or migratory (swans), 3) Resident semi‐aquatic species that live in water and forage mainly on land (hippopotamuses, beavers, capybara), 4) Resident terrestrial species with relatively large home ranges that frequent aquatic habitats (cervids, water buffalo, lowland tapir). Fully aquatic species and swans have the strongest impact on submerged plant abundance and species composition. They may maintain grazing lawns. Because they sometimes target belowground parts, their activity can result in local collapse of plant beds. Semi‐aquatic species and turtles serve as important aquatic–terrestrial linkages, by transporting nutrients across ecosystem boundaries. Hippopotamuses and beavers are important geomorphological engineers, capable of altering the land and hydrology at landscape scales. Migratory species and terrestrial species with large home ranges are potentially important dispersal vectors of plant propagules and nutrients. Clearly, large aquatic herbivores have strong impacts on associated species and can be critical ecosystem engineers of aquatic systems, with the ability to modify direct and indirect functional pathways in ecosystems. While global populations of large aquatic herbivores are declining, some show remarkable local recoveries with dramatic consequences for the systems they inhabit. A better understanding of these functional roles will help set priorities for the effective management of large aquatic herbivores along with the plant habitats they rely on.     

The role of sea ice in structuring Antarctic ecosystems

Summary This paper focusses on the links between growth, persistence and decay of sea ice and the structure of Antarctic marine ecosystems on different spatial and temporal scales. Sea-ice growth may divide an oceanic ecosystem into two dissimilar compartments: (1) the water column, with primary production controlled by the reduction of irradiative fluxes due to the snow-laden sea-ice cover and thermo-haline convection, and (2) the pore space within the ice with incorporated organisms switching from a planktonic to a kryohaline mode of life. In the ice, physical boundary conditions are set by (1) the irradiance which is controlled by the optical properties of snow and ice and (2) the ambient temperature which controls salinity and brine volume. Partly due to the high levels of biomass within the sea-ice system, interaction between different groups of organisms concentrates on the planar environment predefined by the ice cover. As a result of regional structuring of ecosystems, four sea-ice regimes may be recognized: seasonal pack ice, coastal zone, perennial pack ice, and marginal ice zone. These regimes are interwoven through the temporal structuring of ecosystems brought about by ice-cover seasonality and ice drift. In comparison with open-water pelagic ecosystems, sea ice appears of particular importance as it partly inverts the ecosystem structure and enhances the degree of ecological variability.Data presented here were collected during the European Polarstern Study (EPOS) sponsored by the European Science Foundation     

Junk-food in marine ecosystems

The abundance and availability of food are critical determininants of reproductive success and population dynamics of marine top predators. However, recent work has indicated that the quality of the food may also be critically important for some marine predators. The 'junkfood hypothesis' was originally suggested as a potential explanation for a dramatic population decline of Stellers sea lions Eumetopias jubatus in the Gulf of Alaska. According to the hypothesis, a dietary switch to prey of low energy content led to detrimental effects on the population of sea lions. A number of observations indicate that the hypothesis is relevant for several population parameters. Recent work on piscivorous seabirds has provided substantial evidence indicating the relevance of this hypothesis in food webs in e.g. the North Pacific, the North Sea and the Baltic Sea. The emergence of 'junk-food' in these systems may be coupled to large scale changes in climatological and oceanographic forcing, although predation, fishing and competition provide additional plausible hypotheses. It may be possible to predict which kinds of animals will be particularly sensitive to food quality; these seem to be species with limited ability to carry food loads, with energetically-expensive foraging behaviour, and with digestive anatomy evolved to minimize mass at the cost of digestive efficiency. This review suggests that the junk-food hypothesis is a highly relevant factor in relation to sustaining ecosystem resilience, and is an important consideration in ecosystem management. Sustaining healthy populations of marine top-predators requires an understanding of the role of food quality, in addition to food abundance and availability.     

Coastal marine ecosystems of Mauritius

The coastal ecosystems of Mauritius island (1850 km², 20° S and 57° E, Indian Ocean) consist of lagoons, reefs, estuaries, mangroves, salt water wetlands, and sheltered bays. Fringing reefs almost completely surround the volcanic island, enclosing a series of lagoons of variable depths (1–4 m). Tides are not important but wave heights can reach 3 m. The zonation of lagoons in a transect from the beach towards the open sea is given, together with the zonal distribution of the flora and fauna, the types of corals and sediments, the detrital sediment composition, the different hydrodynamic processes acting on the benthic sediments, as well as the geochemical (redox) processes. Commercial exploitation of the lagoonal fisheries and other anthropogenic factors have contributed to reef stress and degradation. A rich algal biomass is present which shows seasonal variation. Two species of mangroves, Rhizophora mucronata and Bruguiera gymnorrhiza exist. Fish and shellfish culture is practised in enclosed ponds (barachois).     

Microbial behaviour in salt-stressed ecosystems

Abstract: Salt stress is primarily osmotic stress, and halophilic/halotolerant microorganisms have evolved two basic mechanisms of osmoadaplation: the KCI-type and the compatible-solute type, the latter representing a very flexible mode of adaptation making use of distinct stabilizing properties of compatible solutes. A comprehensive survey, using HPLC and NMR methods, has revealed the full diversity of euhacterial compatible solutes found in nature. With the exception of proline (a proteinogenic amino acid) they are characterized as amino acid derivatives of the following types: betaines, ectoines, N-acetylated diamino acids and N-derivatized carboxamides of glutamine. From our present knowledge of hiosynthetic pathways it appears that, apart from glycine betaine, all nitrogen-containing compatible solutes originate from two major pathways (the aspartate branch and the glutamate branch). Uptake of compatible solutes from the growth medium (environment) seems to have preference over de novo synthesis. Therefore in the natural ecosystem the solutes of primary producers (mainly glycine betaine), which are readily excreted upon dilution stress, certainly play an important role as a 'preferred' solute source for heterolrophic organisms, and as a 'vital' source for organisms unable to synthesize their own compatible solutes.     

Endolithic fungi in marine ecosystems

Fungi are an important constituent of microbial endolithic assemblages in marine ecosystems. As euendoliths, they penetrate limestone, mollusk shells and other carbonate substrates, where they can exploit mineralized organic matter, attack their hosts, or engage in symbiotic relationships. They leave specific boring traces, which can be identified in the fossil record and described as trace fossils. Their distribution is independent of light and extends from the intertidal ranges to abyssal oceanic depths. Important, but insufficiently studied, is the role of aggressive endolithic fungi in skeletons of corals where they are ubiquitous and globally distributed. In healthy growing reef corals, the relationship between the coral coelenterate, endolithic algae and fungi is in a state of equilibrium, but can turn detrimental to coral health when reefs are exposed to environmental stress.     

Role of fungi in marine ecosystems

Marine fungi are an ecological rather than a taxonomic group and comprise an estimated 1500 species, excluding those that form lichens. They occur in most marine habitats and generally have a pantropical or pantemperate distribution. Marine fungi are major decomposers of woody and herbaceous substrates in marine ecosystems. Their importance lies in their ability to aggressively degrade lignocellulose. They may be important in the degradation of dead animals and animal parts. Marine fungi are important pathogens of plants and animals and also form symbiotic relationships with other organisms. The effect of disturbances on marine fungi is poorly investigated. Keystone marine species may exist, especially in mutualistic symbioses. However, as many saprophytes appear to carry out the same function simultaneously, they may be functionally redundant. The need for a concerted effort to investigate the biodiversity and role of marine fungi globally and on as many substrata as possible is presented.     

Microbial diversity-productivity relationships in aquatic ecosystems

Thanks to recent advances in molecular biology, one's knowledge of microbial co-occurrence patterns, microbial biogeography and microbial biodiversity is expanding rapidly. This MiniReview explores microbial diversity-productivity relationships in the light of what is known from the general ecology literature. Analyses of microbial diversity-productivity relationships from 70 natural, experimental, and engineered aquatic ecosystems reveal patterns that are strikingly similar to those that have long been documented for communities of macroorganisms. Microbial ecology and the general science of ecology are thus continuing to converge.     

Multivariate analysis of experimental marine ecosystems

Twelve replicate 150-l laboratory microcosms were developed using whole water samples and natural benthic communities from Narragansett Bay, Rhode Island (USA). The microcosms were scaled to the bay in terms of salinity, temperature, light input, volume pelagic community to area of benthic community, density of macrofauna, turbulent mixing, and flushing time. The microcosms were self maintaining during a six month study period with over 35 species of phytoplankton and 30 species of macro-invertebrates. Some 25 species of meroplankton entered the microcosms and sucessfully colonized the benthic communities. Zooplankton were present in all life stages. After an initial study of replication among the 12 tanks, the microcosms were perturbed with 3 levels of treated urban sewage for a three month period. Three microcosms were maintained at each level with 3 tanks remaining as controls. At the end of 3 months, the sewage input was terminated and the response of the systems was followed for an additional 2 months. Both time series data and multivariate statistical analysis of over 10 different parameters indicated that the replication of the microcosms was adequate to show the effects of experimental treatments. Control microcosms were generally within the range of variation expected in Narragansett Bay. Moreover, the results suggested that the microcosms responded to the gradient of sewage input in a manner similar to that of the bay. During the two month period after the sewage was discontinued, all of the microcosms became increasingly similar, though the tanks that had been subjected to higher levels of sewage remained distinct. It was apparent throughout the study that comparisons of microcosms and natural systems must account for the large variation characteristic of each. For this, and other reasons, multivariate statistical techniques appear to provide a powerful tool for experimental ecosystem analysis.     

Nitrogen cycling in coastal marine ecosystems

It is generally considered that nitrogen availability is one of the major factors regulating primary production in temperate coastal marine environments. Coastal regions often receive large anthropogenic inputs of nitrogen that cause eutrophication. The impact of these nitrogen additions has a profound effect in estuaries and coastal lagoons where water exchange is limited. Such increased nutrient loading promotes the growth of phytoplankton and fast growing pelagic macroalgae while rooted plants (sea-grasses) and benthic are suppressed due to reduced light availability. This shift from benthic to pelagic primary production introduces large diurnal variations in oxygen concentrations in the water column. In addition oxygen consumption in the surface sediments increases due to the deposition of readily degradable biomass. In this review the physico-chemical and biological factors regulating nitrogen cycling in coastal marine ecosystems are considered in relation to developing effective management programmes to rehabilitate seagrass communities in lagoons currently dominated by pelagic macroalgae and/or cyanobacteria.     

海洋生态系统稳定同位素基线的选取

稳定同位素技术在海洋食物网研究中得到了广泛的应用,但在分析海洋生物食性和营养级时,需要选择某种生物或物质的稳定同位素值作为基线.本文综述了河口和海湾、浅海、大洋及深海4类典型海洋生态系统稳定同位素基线的选取,分析了影响稳定同位素基线选择的因素,以及特定化合物稳定同位素在消除基线时空异质性中的潜在价值,并对目前存在的问题以及今后的研究方向进行了展望,以期为国内学者进一步深入开展海洋生态系统的稳定同位素生态学研究提供有益参考.     

Recovery of marine animal populations and ecosystems

Many marine populations and ecosystems have experienced strong historical depletions, yet reports of recoveries are increasing. Here, we review the growing research on marine recoveries to reveal how common recovery is, its magnitude, timescale and major drivers. Overall, 10-50% of depleted populations and ecosystems show some recovery, but rarely to former levels of abundance. In addition, recovery can take many decades for long-lived species and complex ecosystems. Major drivers of recovery include the reduction of human impacts, especially exploitation, habitat loss and pollution, combined with favorable life-history and environmental conditions. Awareness, legal protection and enforcement of management plans are also crucial. Learning from historical recovery successes and failures is essential for implementing realistic conservation goals and promising management strategies.     

Microbial ecosystems are dominated by specialist taxa

Abundance and specificity are two key characteristics of species distribution and biodiversity. Theories of species assembly aim to reproduce the empirical joint patterns of specificity and abundance, with the goal to explain patterns of biodiversity across habitats. The specialist‐generalist paradigm predicts that specialists should have a local advantage over generalists and thus be more abundant. We developed a specificity index to analyse abundance–specificity relationships in microbial ecosystems. By analysing microbiota spanning 23 habitats from three very different data sets covering a wide range of sequencing depths and environmental conditions, we find that habitats are consistently dominated by specialist taxa, resulting in a strong, positive correlation between abundance and specificity. This finding is consistent over several levels of taxonomic aggregation and robust to errors in abundance measures. The relationship explains why shallow sequencing captures similar β‐diversity as deep sequencing, and can be sufficient to capture the habitat‐specific functions of microbial communities.