Does codon composition influence ribosome function?

Escherichia coli ribosomes pre-initiated with N-acetyl-Val-tRNAVal elongate strictly alternating poly(U-G) at a rate between eight and 12 peptide bonds per second per ribosome in vitro. Comparisons with poly(U)-primed poly(Phe) synthesis show that these systems function with the same rates which are close to those of protein synthesis in vivo. This indicates that, at least in vitro, codon composition has no marked influence on the speed of elongation when the concentration of ternary complex is saturating. Furthermore, the missense frequencies for the two polymers are within the same range: the missense substitution of Trp for Cys is 10(-4) and that of Met for Val is 10(-3) in the poly(U-G)-primed system. These data argue against models that explain the codon preference of certain gene families by postulating effects of high or low GC content of codons on the performance characteristics of ribosomes.     

Does substrate quality influence take-off decisions in Common Starlings?

1. An instrumented perch was used to measure the reaction forces during take-off of starlings from perches of three thicknesses. There was no significant decrease in reaction force with decreasing perch thickness; however, over the range of perch sizes there was a 10-fold decrease in safety factor and a 400-fold increase in the energy of deflection of the thinnest perch.
2. The implications of these results are that birds do not change their take-off strategy when faced with perches of variable thickness and that, as a result, leaps from thin perches are very much less efficient than those from thicker perches. Birds appear not to adjust their leaping behaviour to minimize the risk of substrate failure during take-offs.     

Does herbivore diversity depend on plant diversity? The case of California butterflies

It is widely believed that the diversity of plants influences the diversity of animals, and this should be particularly true of herbivores. We examine this supposition at a moderate spatial extent by comparing the richness patterns of the 217 butterfly species resident in California to those of plants, including all 5,902 vascular plant species and the 552 species known to be fed on by caterpillars. We also examine the relationships between plant/butterfly richness and 20 environmental variables. We found that although plant and butterfly diversities are positively correlated, multiple regression, path models, and spatial analysis indicate that once primary productivity (estimated by a water-energy variable, actual evapotranspiration) and topographical variability are incorporated into models, neither measure of plant richness has any relationship with butterfly richness. To examine whether butterflies with the most specialized diets follow the pattern found across all butterflies, we repeated the analyses for 37 species of strict monophages and their food plants and found that plant and butterfly richness were similarly weakly associated after incorporating the environmental variables. We condude that plant diversity does not directly influence butterfly diversity but that both are probably responding to similar environmental factors.     

Can forest management have season-dependent effects on bird diversity?

Forest management modified the original structure of most European forests, and in the most extreme cases, genuinely natural and semi-natural forests were turned into plantations through clear felling and replanting, often using non-native species. We compared the bird community structure of native oak woods of northern Italy with that of their anthropogenic counter-parts: black locust and sweet chestnut woods. The three stand types were compared in terms of vegetation structure, bird species richness, diversity and abundance of foraging guilds. We analysed both the overwintering and the breeding community, to assess whether management had specific seasonal effects on bird diversity. Forestry-imposed disturbances affected bird diversity more consistently in winter than in breeding time: bird species richness and diversity were significantly greater in oak and chestnut stands, which were the preferred habitat for bark foragers and foliage gleaners. In the breeding period, bird diversity of black locust woodlands increased, and inter-stand differences were not significant. At this time of year, understorey gleaners were more abundant in black locust stands (where shrubs were denser). In winter, species richness, diversity and the abundance of several guilds were positively correlated with stand age, whereas in the breeding period canopy gleaners preferred younger woodlots. Despite the lack of inter-stand differences in breeding bird diversity, young-managed woods benefited generalist birds that need no particular conservation efforts. Conversely, priority species for forest conservation such as specialised bark foragers positively selected native and mature stands throughout the year. We suggest that detailed year-round studies on diversity and community composition could sharpen the precision with which it is possible to prescribe conservation measures in forested areas.     

Does crop genetic diversity support positive biodiversity effects under experimental drought?

Enhancing diversity within crop systems can have benefits including increased resource use efficiency and productivity, and increased control of weeds, pests and diseases. Some benefits are expected to operate through biodiversity-driven insurance effects, whereby enhanced diversity increases the chance that a system component can compensate for the impacts of adverse environmental conditions. Studies of insurance effects in natural and agricultural systems have provided equivocal results. As insurance effects are expected to play a key role in helping to maintain crop production in more variable future climates (for example under periodic drought), it is essential to know when and how they operate and interact with other potentially beneficial biodiversity-function effects. Using barley as a model crop, and pot-based plant communities, we studied the interactive effects of barley cultivar diversity and drought stress on plant productivity and the response of agricultural weeds, fungal disease, and aphids. Drought reduced barley and weed biomass, but there were no interactive effects of drought and cultivar diversity on plant productivity. Increased cultivar diversity enhanced weed suppression, potentially as a result of reduced functional space availability, and reduced disease severity on a susceptible cultivar; these effects were consistent irrespective of drought. Aphid responses were more complex, with idiosyncratic response patterns on individual cultivars. Overall, we found no evidence of an insurance effect of enhanced cultivar diversity for the negative impact of drought on crop productivity, but our results indicate that other positive biodiversity effects (weed and disease suppression) are maintained under drought. However, it is clear that not all potentially-beneficial biodiversity effects respond in the same manner. Field trials are now needed to explore whether a range of responses also occur in crop field settings, whether these can be expected to occur predictably under a range of environmental conditions, and how these then impact on crop production.     

Headwater streams and forest management: Does ecoregional context influence logging effects on benthic communities?

Effects of forest management on stream communities have been widely documented, but the role that climate plays in the disturbance outcomes is not understood. In order to determine whether the effect of disturbance from forest management on headwater stream communities varies by climate, we evaluated benthic macroinvertebrate communities in 24 headwater streams that differed in forest management (logged-roaded vs. unlogged-unroaded, hereafter logged and unlogged) within two ecological sub-regions (wet versus dry) within the eastern Cascade Range, Washington, USA. In both ecoregions, total macroinvertebrate density was highest at logged sites (P = 0.001) with gathering-collectors and shredders dominating. Total taxonomic richness and diversity did not differ between ecoregions or forest management types. Shredder densities were positively correlated with total deciduous and Sitka alder (Alnus sinuata) riparian cover. Further, differences in shredder density between logged and unlogged sites were greater in the wet ecoregion (logging × ecoregion interaction; P = 0.006) suggesting that differences in post-logging forest succession between ecoregions were responsible for differences in shredder abundance. Headwater stream benthic community structure was influenced by logging and regional differences in climate. Future development of ecoregional classification models at the subbasin scale, and use of functional metrics in addition to structural metrics, may allow for more accurate assessments of anthropogenic disturbances in mountainous regions where mosaics of localized differences in climate are common.     

Does COMT genotype influence the effects of d‐amphetamine on executive functioning?

In a widely cited study, Mattay et al. reported that amphetamine (0.25 mg/kg oral, or 17 mg for a 68 kg individual) impaired behavioral and brain indices of executive functioning, measured using the Wisconsin Card Sorting Task (WCST) and N‐Back working memory task, in 6 individuals homozygous for the met allele of the val158met polymorphism in the catechol‐O‐methyltransferase (COMT) gene, whereas it improved executive functioning in 10 individuals homozygous for the more active val allele. We attempted to replicate their behavioral findings in a larger sample, using similar executive functioning tasks and a broader range of amphetamine doses. Over four sessions, n = 200 healthy normal adults received oral placebo, d‐amphetamine 5, 10, and 20 mg (average of 0.07, 0.15 and 0.29 mg/kg), under counterbalanced double‐blind conditions and completed WCST and N‐back tests of executive functioning. Amphetamine had typical effects on blood pressure and processing speed but did not affect executive functioning. COMT genotype (val158met) was not related to executive functioning under placebo or amphetamine conditions, even when we compared only the homozygous val/val and met/met genotypes at the highest dose of amphetamine (20 mg). Thus, we were not able to replicate the behavioral interaction between COMT and amphetamine seen in Mattay et al. We discuss possible differences between the studies and the implications of our findings for the use of COMT genotyping to predict clinical responses to dopaminergic drugs, and the use of intermediate phenotypes in genetic research.     

Do temperate tree species diversity and identity influence soil microbial community function and composition?

Studies of biodiversity–ecosystem function in treed ecosystems have generally focused on aboveground functions. This study investigates intertrophic links between tree diversity and soil microbial community function and composition. We examined how microbial communities in surface mineral soil responded to experimental gradients of tree species richness (SR ), functional diversity (FD ), community‐weighted mean trait value (CWM ), and tree identity. The site was a 4‐year‐old common garden experiment near Montreal, Canada, consisting of deciduous and evergreen tree species mixtures. Microbial community composition, community‐level physiological profiles, and respiration were evaluated using phospholipid fatty acid (PLFA ) analysis and the MicroResp^? system, respectively. The relationship between tree species richness and glucose‐induced respiration (GIR ), basal respiration (BR ), metabolic quotient (qCO ₂) followed a positive but saturating shape. Microbial communities associated with species mixtures were more active (basal respiration [BR ]), with higher biomass (glucose‐induced respiration [GIR ]), and used a greater number of carbon sources than monocultures. Communities associated with deciduous tree species used a greater number of carbon sources than those associated with evergreen species, suggesting a greater soil carbon storage capacity. There were no differences in microbial composition (PLFA ) between monocultures and SR mixtures. The FD and the CWM of several functional traits affected both BR and GIR . In general, the CWM of traits had stronger effects than did FD , suggesting that certain traits of dominant species have more effect on ecosystem processes than does FD . Both the functions of GIR and BR were positively related to aboveground tree community productivity. Both tree diversity (SR ) and identity (species and functional identity—leaf habit) affected soil microbial community respiration, biomass, and composition. For the first time, we identified functional traits related to life‐history strategy, as well as root traits that influence another trophic level, soil microbial community function, via effects on BR and GIR .     

Does insect herbivory on oak depend on the diversity of tree stands?

Studies on the effects of plant diversity on insect herbivory have produced conflicting results. Plant diversity has been reported to cause positive and negative responses of herbivores. Explanations for these conflicting responses include not only various population-level processes but also changes in plant quality that lead to changes in herbivore performance. In a tree diversity experiment, we investigated the effects of tree diversity on insect herbivory on oak in general and whether the effects of tree diversity on herbivore damage are reflected by the performance (leaf consumption, growth) of the generalist herbivore Lymantria dispar. Our study showed that the feeding damage caused by naturally occurring herbivores on oak trees decreased with increasing diversity of tree stands. The performance of L. dispar on oak leaves was not affected by tree diversity, neither in field nor laboratory experiments. Our results can be explained by the various processes behind the hypothesis of associational resistance.     

Does sunlight have a beneficial influence on certain cancers?

Apperly [1941. The relation of solar radiation to cancer mortality in North America. Cancer Research 1, 191-195] first proposed that increased mortality from cancer in the north than in the south of the USA might be due to the south to north decrease in ambient solar radiation. This inverse association between ambient solar radiation and cancer mortality has been subsequently reported for cancers of the colon, breast, ovary and prostate. While the evidence that sunlight might be related to lower incidence or more favourable outcomes from cancer came initially from ecological studies, case-control and cohort studies have now shown a similar association of sun exposure with risks of colon, breast and prostate cancers in individuals, and other studies in individuals have found that serum and dietary vitamin D levels are associated with reduced risks of colorectal cancer and, less certainly, prostate cancer. Studies in individuals have recently also suggested an effect of sun exposure to reduce risk of non-Hodgkin lymphoma and to increase survival after a diagnosis of melanoma. Data on variation in survival from cancer by season of diagnosis suggest that sun exposure may also improve outcome from cancers of the breast, colon and prostate and Hodgkin lymphoma.     

Does consumer injury modify invasion impact?

Predicting the impacts of an invasive species solely by its abundance is common, yet it ignores other potentially important moderating factors. One such factor is injury. Severe injury can lead to mortality, which can directly reduce the abundance of the invader. However, more moderate, sublethal injury can also temper the impact of invasive species. Therefore, to predict impacts, it may be useful to examine not only abundance, but also moderating factors (e.g., injury) and predictors of these factors (e.g., density, size). We documented the density, injury (i.e., limb loss), and size of two conspicuous invaders, the European green crab (Carcinus maenas) and the Asian shore crab (Hemigrapsus sanguineus), at thirty sites from Shinnecock County Park, New York to Lubec, Maine. In addition, we used a field experiment to determine how injury influenced the consumption rate of mussels (Mytilus edulis) by each crab species. 31.6% of all C. maenas (1,493/4,721) and 30.7% of H. sanguineus (2,003/6,523) were missing appendage(s). Of the crabs injured, 38.4% (573/1,493) and 30.5% (611/2,003) were missing cheliped(s) for C. maenas and H. sanguineus, respectively. In our experiments, cheliped loss reduced consumption of both species on M. edulis. Injured C. maenas consumed 21% fewer mussels than uninjured crabs. Injury completely eliminated mussel consumption by H. sanguineus. Previous studies have highlighted the detrimental impacts of these two invaders on native bivalve prey. While the loss of a single cheliped can greatly reduce or even eliminate the ability of C. maenas and H. sanguineus to consume M. edulis, our results suggest that injury has a relatively minor role in reducing overall population-level impacts on prey such as mussels. However, injury on an individual-level can play a role in moderating the consumptive impacts of these invaders.     

Does environmental disturbance also influence within-stream beta diversity of macroinvertebrate assemblages in tropical streams?

Riparian deforestation is a major threat to the ecological integrity of streams and aquatic biodiversity, influencing microhabitat availability and susceptibility to disturbances. Here we tested if riparian deforestation of tropical streams influenced beta diversity of macroinvertebrate assemblages, by comparing indices that weighted differentially rare and dominant taxa, and testing if nestedness in community composition increased in deforested streams. Within-stream beta diversity was higher in deforested than forested streams, mainly due to taxon loss and higher dominance. In disturbed streams, higher sedimentation in pool mesohabitats resulted in larger differences in community composition, whereas mesohabitats in forested streams were more stable.     

Does the width of isolated ravine forests influence moss and liverwort diversity and composition?—A study of temperate forests in South Africa

The evidence of microclimatic edge effects through forest/open area ecotones is firm. How this affects the species composition near edges is less well understood and documented. In south-western South Africa shrub-dominated regularly burnt vegetation (i.e. fynbos) is the most common vegetation with indigenous temperate forests naturally occurring mostly in ravines on mountain slopes. The size and width of these forest patches varies considerably. In order to understand how the width of forest patches affects species composition of mosses and liverworts we investigated 20 forest patches of different width. In each forest patch we compiled a total species list, and collected data on selected environmental variables, for a plot of 10×20 m. No significant relationship was found between patch width and the number of either moss or liverwort species. However, the species composition of mosses (but not liverworts) changed along the gradient of patch width. The variation in number of species was large (8–29 mosses and 11–33 liverworts) among the plots and we propose that factors other than distance to the forest edge may be more important in structuring the bryophyte community of these ravine forests. One such factor that is likely to be important is the climatic difference among the plots. There is variation in features, such as precipitation, summer temperature, cloudiness, and the amount of fog, for which we do not have data but that could overrule the microclimatic differences due to edge effects.     

Does predation contribute to tree diversity?

Seed and seedling predation may differentially affect competitively superior tree species to increase the relative recruitment success of poor competitors and contribute to the coexistence of tree species. We examined the effect of seed and seedling predation on the seedling recruitment of three tree species, Acer rubrum (red maple), Liriodendron tulipifera (yellow poplar), and Quercus rubra (northern red oak), over three years by manipulating seed and seedling exposure to predators under contrasting microsite conditions of shrub cover, leaf litter, and overstory canopy. Species rankings of seedling emergence were constant across microsites, regardless of exposure to seed predators, but varied across years. A. rubrum had the highest emergence probabilities across microsites in 1997, but Q. rubra had the highest emergence probabilities in 1999. Predators decreased seedling survival uniformly across species, but did not affect relative growth rates (RGRs). Q. rubra had the highest seedling survivorship across microsites, while L. tulipifera had the highest RGRs. Our results suggest that annual variability in recruitment success contributes more to seedling diversity than differential predation across microsites. We synthesized our results from separate seedling emergence and survival experiments to project seedling bank composition. With equal fecundity assumed across species, Q. rubra dominated the seedling bank, capturing 90% of the regeneration sites on average, followed by A. rubrum (8% of sites) and L. tulipifera (2% of sites). When seed abundance was weighted by species-specific fecundity, seedling bank composition was more diverse; L. tulipifera captured 62% of the regeneration sites, followed by A. rubrum (21% of sites) and Q. rubra (17% of sites). Tradeoffs between seedling performance and fecundity may promote the diversity of seedling regeneration by increasing the probability of inferior competitors capturing regeneration sites.     

Does predation maintain tit community diversity?

European tits of the genus Parus constitute a complex group of coexisting boreal birds. Here we present a survey of the distribution of three coniferous-living Parus species and one of their main predators, the pygmy owl ( Glaucidium passerinum ), on nine isolated islands in Scandinavia. On all islands the coal tit ( Parus ater ) is the sole tit species when the pygmy owl is absent. The two larger species, the willow tit ( P. montanus ) and the crested tit ( P. cristatus ), only coexist with the coal tit when pygmy owls are present. We suggest that the coexistence of willow tits, crested tits and coal tits is the result of a combination of competition for food and predator-safe foraging sites. The smaller coal tit is superior in exploitation competition for food, while the two larger species have an advantage in interference competition for predator-safe foraging sites. The association between the distribution of the pygmy owl and the two larger tit species on isolated islands in Scandinavia is consistent with the idea that the pygmy owl is a keystone predator.