Evaluation of damage to physic nut (Jatropha curcas) by true bugs

The type of injury and amount of damage to the fruits and seeds of physic nut (Jatropha curcas L., Euphorbiaceae) caused by two species of fruit feeding true bugs, Pachycoris klugii Burmeister (Heteroptera: Scutelleridae) and Leptoglossus zonatus (Dallas) (Heteroptera: Coreidae), and the flower feeding true bug, Hypselonotus intermedius Distant (Heteroptera: Coreidae), were assessed using field cages. The parameters analysed were infructescence, fruit, seed and seed kernel weight, seed length, fruit and seed abortion, seed malformation and oil and protein content of the seed kernels. All three species reduced overall yield. The two members of the fruit feeding guild led to premature fruit abortion and malformed seeds. Reduction of fruit, seed and seed kernel weight as well as seed length could be expressed as linear regressions of adult population densities. The oil content of the seeds was slightly reduced by the bugs, but protein content remained unchanged. Damage increased with the developmental stage of the larvae. Whereas adult L. zonatus of both sexes produced more damage than the nymphs, female P. klugii caused less damage than nymphs, and male P. klugii no significant damage at all. H. intermedius is a pollinator of this entomogamous plant. At high densities, however, it reduced the number of fruits maturing.     

木本油料植物麻疯树的研究进展

近来,麻疯树(Jatropha curcas L.)因可以作为生物柴油的原料而受到广泛关注。虽然麻疯树具有含油量高且可在边际土地种植的优势,但同时存在理想品种缺乏、种植面积限制、基础研究薄弱等方面的问题。为了使常规育种和生物技术改良工作者更好地了解麻疯树的研究进展,确定日后麻疯树育种和遗传改良的方向,综述了麻疯树种质资源与遗传多样性分析、生理及对环境适应性、组学研究、油脂合成功能基因研究、育种等方面国内外的最新进展。     

Global patterns of arthropod herbivory on an invasive plant,the physic nut (Jatropha curcas L.)

The physic nut (Jatropha curcas L.) is a multipurpose and oil‐producing shrub of Central and South American origin. Since the 15th century, this shrub has existed across tropical regions. Despite its presumed resistance to herbivores, reports show that arthropod herbivores infest it. However, no comprehensive account of arthropod herbivores, which consume the physic nut, exists. Here, we conducted a literature review that provides a comprehensive account of arthropod herbivores of the physic nut. Based on the co‐evolutionary hypothesis, we expected to find a higher herbivore of species richness and a larger proportion of native herbivores within the native range than elsewhere. As physic nut is a well‐defended plant chemically, we expected to find evidence for highest herbivory levels in plant parts that are the least defended. By the literatures review, we compiled 78 arthropod herbivores representing nine orders and from 31 families that feed on physic nut across the globe. As expected, the highest numbers of herbivores (34 species) were documented within the native range of the J. curcas and the lowest species number (21 species) in Africa. Of the 34 species in Central and South America, 94% were of native origin. Nine species were found feeding on J. curcas on more than one continent. Origins of 49% of species were from the native range of J. curcas. The highest percentage (54%) of species belonged to Hemiptera. With regard to feeding guilds, 59% of the herbivores belonged to sucking and 41% to chewing species. Forty‐one per cent of species were flower or fruit feeders, and 36% foliage feeders. We conclude that J. curcas is, despite its toxicity, vulnerable to herbivory, mainly to foliage, flower and fruit feeders.     

Transformation of Jatropha curcas L. for production of larger seeds and increased amount of biodiesel

The development of green energy is important to mitigate global warming. Jatropha (Jatropha curcas L.) is a promising candidate for the production of alternative biofuel, which could reduce the burden on the Earth’s resources. Jatropha seeds contain a large quantity of lipids that can be used to produce biofuel, and the rest of the plant has many other uses. Currently, techniques for plant genetic transformation are extensively employed to study, create, and improve the specific characteristics of the target plant. Successful transformation involves the alteration of plants and their genetic materials. The aim of this study was to generate Jatropha plants that can support biofuel production by increasing their seed size using genes found via the rice FOX-hunting system. The present study improved previous protocols, enabling the production of transgenic Jatropha in two steps: the first step involved using auxins and dark incubation to promote root formation in excised shoots and the second step involved delaying the timing of antibiotic selection in the cultivation medium. Transgenic plants were subjected to PCR analysis; the transferred gene expression was confirmed via RT-PCR and the ploidy level was investigated. The results suggest that the genes associated with larger seed size in Arabidopsis thaliana, which were found using the rice FOX-hunting system, produce larger seeds in Jatropha.     

小桐子愈伤组织的诱导

本文以小桐子的叶片、叶柄、茎段及下胚轴和子叶作为外植体,研究不同外植体类型对愈伤组织诱导的影响,结果表明叶柄的诱导率最高,其次为茎段的诱导率。同时以小桐子的下胚轴作为外植体,研究植物生长调节剂种类及浓度配比对愈伤组织诱导的影响,结果显示6-BA与2,4-D的组合更适宜小桐子愈伤组织的诱导,MS+6-BA0.5mg/L+2,4-D0.1mg/L为小桐子愈伤组织诱导的最佳培养基,其愈伤组织诱导率高达96.7%。本研究为小桐子愈伤组织的分化、植株再生及相关的遗传转化研究提供了参考。     

具有ACC脱氨酶活性的麻疯树根际促生菌(PGPR)的分离筛选及系统发育分析

[目的]获得具有产ACC、IAA,铁载体,能固氮或解磷的潜在促生菌株.[方法]通过稀释涂布的方法,从麻疯树根际土壤中分离得到98株细菌,从中选取28株以产l-氨基环丙烷-1-羧酸(ACC)脱氨酶为主要促生指标进行筛选,同时检测了其产吲哚乙酸(IAA)、固氮、解磷及铁载体等促生指标的能力.[结果]结果显示,46％的菌株能产ACC脱氨酶,其含量最高可达到128.308 μmol α-KA/(mg.h),68％的菌株能产生IAA,54％的菌株有固氮的能力,32％的菌株有解磷的能力.少量菌株同时具有产ACC脱氨酶、IAA,固氮,解磷等能力.挑选代表性菌株进行16S rRNA序列分析,这些菌株属于芽孢杆菌属(Bacillus)、节杆菌属(Arthrobacter)、假单胞菌属(Pseudomonas)和产碱杆菌属(Advenella)等8个属,其中多数菌株(50％)属于芽孢杆菌属,系统发育分析表明菌株KLBMP 4817、KLBMP 4821和KLBMP 4824为窄食单胞菌属(Stenotrophomonas)和类芽孢杆菌属(Paenibacillus)的潜在新种.[结论]攀枝花麻疯树根际土壤细菌中含有丰富的遗传多样性,且存在大量的促生菌株.其中,菌株KLBMP 4804产ACC脱氨酶含量最高.菌株KLBMP4820产IAA含量最显著.     

一个麻疯树RING型锌指蛋白基因JcRFP1的克隆及表达

首次从麻疯树胚乳cDNA丈库中克隆得到一个RJNG型锌指蛋白基（GenBank登录号为JF920726）,命名为JcRFP1。该cDNA长度为728bp,包含编码JcRFP1蛋白的完整开放阅读框（516bp）。脚,基因在麻疯树各器官中均检测到表达且表达量依次为：叶〉茎〉花〉果实〉种子〉根。将克隆到的JcRFP1基因的cDNA序列连接到表达载体pET32a（＋）上,导入BL21（DE3）pLysS菌株,成功诱导表达相对分子质量为33．2kDa的可溶性融合蛋白。该融合蛋白免疫新西兰大白兔,得到效价为1：6500的抗血清。研究表明,JcRFP1蛋白具有体外泛素连接酶E3活性,在麻疯树体内可能参与油菜素甾醇信号转导途径。     

Fatty Acid Diversity is Not Associated with Neutral Genetic Diversity in Native Populations of the Biodiesel Plant Jatropha curcas L.

Jatropha curcas L. (Euphorbiaceae) is a shrub native to Mexico and Central America, which produces seeds with a high oil content that can be converted to biodiesel. The genetic diversity of this plant has been widely studied, but it is not known whether the diversity of the seed oil chemical composition correlates with neutral genetic diversity. The total seed oil content, the diversity of profiles of fatty acids and phorbol esters were quantified, also, the genetic diversity obtained from simple sequence repeats was analyzed in native populations of J. curcas in Mexico. Using the fatty acids profiles, a discriminant analysis recognized three groups of individuals according to geographical origin. Bayesian assignment analysis revealed two genetic groups, while the genetic structure of the populations could not be explained by isolation‐by‐distance. Genetic and fatty acid profile data were not correlated based on Mantel test. Also, phorbol ester content and genetic diversity were not associated. Multiple linear regression analysis showed that total oil content was associated with altitude and seasonality of temperature. The content of unsaturated fatty acids was associated with altitude. Therefore, the cultivation planning of J. curcas should take into account chemical variation related to environmental factors.     

麻疯树种油的理化性质及籽粕中元素含量分析及其应用价值初探

麻疯树(Jatropha curcas L. )为大戟科(Euphorbiaceae)麻疯树属(Jatropha L. )植物,果实含油量高,种仁含油量在60%左右,可用于加工提炼优质生物柴油,以替代日益紧缺的石油能源~([1-2]).近年来,由国家科学技术部和联合国开发计划署共同开展的绿色扶贫项目中,麻疯树已经在中国石漠化最为严重的贵州、四川及云南等省区试种成功.麻疯树全株有毒,其种子、树皮、叶、根和乳汁中含有多种化学成分,可作为医药和生物农药资源;其种子加工后残留的油饼中蛋白质含量较高,可作为优质肥料,经脱毒后也可作为饲料~([3]).     

赤霉素、钙和甜菜碱对小桐子种子萌发及幼苗抗低温和干旱的影响

小桐子(Jatropha curcas L.)属大戟科( Euphorbiaceae)麻疯树属(Jatropha L.)的能源植物。分别以小桐子种子和幼苗为实验材料,研究了不同浓度的赤霉素和CaCl₂单独处理,以及不同浓度的赤霉素、CaCl₂和甜菜碱组合处理对小桐子种子萌发及幼苗抗低温和干旱的影响。结果表明:分别用10 mg/L赤霉素和10 mmol/L CaCl₂处理小桐子种子,不仅可以提高其在正常萌发条件(26℃)、低温(18℃)和干旱胁迫(5% PEG6000)下的发芽率,还可缓解小桐子幼苗在低温(2℃)或干旱胁迫(25% PEG6000)下电解质渗漏率的增加和丙二醛(MDA)的积累。用10 mg/L赤霉素、5 mmol/L CaCl₂和15 mmol/L甜菜碱组合处理小桐子种子,也可进一步增强其在正常萌发(26℃)、低温(18℃)和干旱胁迫(5% PEG6000)条件下种子的发芽率,以及缓解小桐子幼苗在低温(2℃)或干旱胁迫(25% PEG6000)下电解质渗漏率的增加和MDA的积累,表明10 mg/L赤霉素和10 mmol/L CaCl₂分别处理或10 mg/L赤霉素、5 mmol/L CaCl₂和10 mmol/L甜菜碱组合处理可提高小桐子种子在低温和干旱胁迫下的发芽率,以及提高小桐子幼苗对低温和干旱胁迫的抵抗能力。     

Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps

 Three RFLP maps, as well as several RAPD maps have been developed in common bean (Phaseolus vulgaris L.). In order to align these maps, a core linkage map was established in the recombinant inbred population BAT93×Jalo EEP558 (BJ). This map has a total length of 1226 cM and comprises 563 markers, including some 120 RFLP and 430 RAPD markers, in addition to a few isozyme and phenotypic marker loci. Among the RFLPs mapped were markers from the University of California, Davis (established in the F₂ of the BJ cross), University of Paris-Orsay, and University of Florida maps. These shared markers allowed us to establish a correspondence between the linkage groups of these three RFLP linkage maps. In total, the general map location (i.e., the linkage group membership and approximate location within linkage groups) has been determined for some 1070 markers. Approaches to align this core map with other current or future maps are discussed. Received: 10 March 1998 / Accepted: 22 April 1998     

小桐子花的性别与开花时间的相互关系

通过对小桐子(Jatropha curcas L.)花序上小花的开花顺序和小花性别的观察,发现其聚伞花序中心花的性别与其开花时间相关联,同时还和周围其它小花的性别有很大的相关性.中心花若在整个花序开花的第一天开放,仅有23.2%的可能是雌花;若在第二天及以后开放,有85%以上的可能为雌花.而中心花的性别又与其它花的性别相关,中心花如为雌花,那么聚伞花序上的其它小花有80%的可能性为雌花;但中心花若为雄花,那么整个聚伞花序上将不会再有雌花.研究小桐子的开花行为及性别控制规律,对于进一步人工调控小桐子花的性别表达,提高小桐子的产量、培育高产稳产品种,具有重要的应用价值.     

Towards a whole‐genome sequence for rye (Secale cereale L.)

We report on a whole‐genome draft sequence of rye (Secale cereale L.). Rye is a diploid Triticeae species closely related to wheat and barley, and an important crop for food and feed in Central and Eastern Europe. Through whole‐genome shotgun sequencing of the 7.9‐Gbp genome of the winter rye inbred line Lo7 we obtained a de novo assembly represented by 1.29 million scaffolds covering a total length of 2.8 Gbp. Our reference sequence represents nearly the entire low‐copy portion of the rye genome. This genome assembly was used to predict 27 784 rye gene models based on homology to sequenced grass genomes. Through resequencing of 10 rye inbred lines and one accession of the wild relative S. vavilovii, we discovered more than 90 million single nucleotide variants and short insertions/deletions in the rye genome. From these variants, we developed the high‐density Rye600k genotyping array with 600 843 markers, which enabled anchoring the sequence contigs along a high‐density genetic map and establishing a synteny‐based virtual gene order. Genotyping data were used to characterize the diversity of rye breeding pools and genetic resources, and to obtain a genome‐wide map of selection signals differentiating the divergent gene pools. This rye whole‐genome sequence closes a gap in Triticeae genome research, and will be highly valuable for comparative genomics, functional studies and genome‐based breeding in rye.     

Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution

In plant species with large genomes such as wheat or barley, genome organization at the level of DNA sequence is largely unknown. The largest sequences that are publicly accessible so far from Triticeae genomes are two 60 kb and 66 kb intervals from barley. Here, we report on the analysis of a 211 kb contiguous DNA sequence from diploid wheat (Triticum monococcum L.). Five putative genes were identified, two of which show similarity to disease resistance genes. Three of the five genes are clustered in a 31 kb gene-enriched island while the two others are separated from the cluster and from each other by large stretches of repetitive DNA. About 70% of the contig is comprised of several classes of transposable elements. Ten different types of retrotransposons were identified, most of them forming a pattern of nested insertions similar to those found in maize and barley. Evidence was found for major deletion, insertion and duplication events within the analysed region, suggesting multiple mechanisms of genome evolution in addition to retrotransposon amplification. Seven types of foldback transposons, an element class previously not described for wheat genomes, were characterized. One such element was found to be closely associated with genes in several Triticeae species and may therefore be of use for the identification of gene-rich regions in these species.     

Construction of a linkage map of Lentinula edodes (shiitake) with the HEGS (high-efficiency genome scanning) system: use of versatile AFLP and PCR-based gene markers

An improved linkage map of Lentinula edodes (shiitake) was constructed with an HEGS (high-efficiency genome scanning) system. Two hundred twenty-one HEGS-derived amplified fragment length polymorphism (AFLP-H) markers and 21 gene markers were developed and combined with 203 previously developed sequencer-derived AFLP markers (AFLP-S markers) and 3 mating factor loci (A, Bα, and Bβ) to construct a comprehensive linkage analysis. As a result, a novel linkage map with 166 markers including 2 mating factors (A and B), 10 HEGS-derived gene markers, 72 AFLP-H markers, and 82 AFLP-S markers was obtained. Of the total 448 markers, 273 could not be located on a linear map and thus were assigned to linkage groups as accessory markers. The map covers a total length of 1398.4 centimorgans (cM) with an average marker interval distance of 8.4 cM. The map consists of 11 linkage groups (LGs) in agreement with our previous map, and 7 LGs among them were found to contain branched linkages, which may be the result of reciprocal translocations representing dynamic reorganization of the shiitake genome. The previously reported linkage map was improved in terms of number of markers, marker density, linear order of markers, and total map length. Contribution no. 384 of the Tottori Mycological Institute     

Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.)

To facilitate marker assisted selection, there is an urgent need to construct a saturated genetic map of upland cotton (Gossypium hirsutum L.). Four types of markers including SSR, SRAP, morphological marker, and intron targeted intron–exon splice junction (IT-ISJ) marker were used to construct a linkage map with 270 F_2:7 recombinant inbred lines derived from an upland cotton cross (T586 × Yumian 1). A total of 7,508 SSR, 740 IT-ISJ and 384 SRAP primer pairs/combinations were used to screen for polymorphism between the two mapping parents, and the average polymorphisms of three types of molecular markers represented 6.8, 6.6 and 7.0%, respectively. The polymorphic primer pairs/combinations and morphological markers were used to genotype 270 recombinant inbred lines, and a map including 604 loci (509 SSR, 58 IT-ISJ, 29 SRAP and 8 morphological loci) and 60 linkage groups was constructed. The map spanned 3,140.9 cM with an average interval of 5.2 cM between two markers, approximately accounting for 70.6% of the cotton genome. Fifty-four of 60 linkage groups were ordered into 26 chromosomes. Multiple QTL mapping was used to identify QTL for fiber quality traits in five environments, and thirteen QTL were detected. These QTL included four for fiber length (FL), two for fiber strength (FS), two for fiber fineness (FF), three for fiber length uniformity (FU), and two for fiber elongation (FE), respectively. Each QTL explained between 7.4 and 43.1% of phenotypic variance. Five out of thirteen QTL (FL1 and FU1 on chromosome 6, FL2, FU2 and FF1 on chromosome7) were detected in five environments, and they explained more than 20% of the phenotypic variance. Eleven QTL were distributed on A genome, while the other two on D genome.     

A linkage map of the pea (Pisum sativum L.) genome containing cloned sequences of known function and expressed sequence tags (ESTs)

 A linkage map of the pea (Pisum sativum L.) genome is presented which is based on F₂ plants produced by crossing the marrowfat cultivar ‘Primo’ and the blue-pea breeding line ‘OSU442-15’. This linkage map consists of 209 markers and covers 1330 cM (Kosambi units) and includes RFLP, RAPD and AFLP markers. By mapping a number of anchor loci, the ‘Primo’בOSU442-15’ map has been related to other pea linkage maps. A feature of the map is the incorporation of 29 loci representing genes of known function, obtained from other laboratories. The map also contains RFLP loci detected using sequence-characterized cDNA clones developed in our laboratory. The putative identities of 38 of these cDNA clones were assigned by examining public-sequence databases for protein or nucleotide-sequence similarities. The conversion of sequence-characterized pea cDNAs into PCR-amplifiable and polymorphic sequence-tagged sites (STSs) was investigated using 18 pairs of primers designed for single-copy sequences. Eleven polymorphic STSs were developed. Received: 18 June 1997 / Accepted: 11 August 1997     

大蜡螟气味受体基因Gmel/Orco的克隆与序列分析

为进一步研究大蜡螟嗅觉通讯分子机制和寻求新的大蜡螟防治技术,本研究克隆了大蜡螟Galleria mellonella L.的气味受体基因Gmel/Orco,并对其序列进行生物信息学分析。根据GenBank中已发表的鳞翅目昆虫非典型气味受体家族基因的氨基酸保守序列设计简并引物,采用RT-PCR方法扩增目的基因,将其克隆至T载体并测序。克隆获得大蜡螟气味受体Orco的cDNA序列,命名为Gmel/Orco(GenBank登录号:KT020861),序列分析结果显示,Gmel/Orco开放阅读框长1425 bp,编码474个氨基酸,分子量为53.36 k D,等电点为8.44,序列中有7个跨膜区,N-端在细胞膜内,C-端在细胞膜外。通过在Gen Bank中进行序列的同源性比较,该基因与已公布的鳞翅目螟蛾科、夜蛾科昆虫的非典型气味受体基因序列有较高的同源性。克隆所获得的基因属于非典型气味受体家族基因。