Axial nature of the cupule-bearing organ in Caytoniales

Caytoniales are an important group of seed plants, and the nature of their female reproductive organ may influence interpretations of the seed plant phylogeny and the origin of angiosperms. Although not convincingly demonstrated by clear evidence, cupules on previously described specimens were interpreted as being distichously arranged, implying that the cupule-bearing organ in Caytoniales was a pinnate megasporophyll. Here a female reproductive organ of Paracaytonia hongtaoi gen. et sp. nov. (Caytoniales) is reported from Liaoning, China. The well preserved specimen clearly shows a spiral arrangement of cupules along the reproductive axis, suggesting that the cupule-bearing organ in Caytoniales is not a megasporophyll but a branch. This new information on the axial nature of the cupule-bearing organ in Caytoniales has significant implications on the placement of Caytoniales in the seed plant phylogeny and interpretation of the relationship between Caytoniales and angiosperms.     

The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north‐European endemics from the Galium pusillum polyploid complex (Rubiaceae)

The role of glacial oscillations in shaping plant diversity has been only rarely addressed in endemics of formerly glaciated areas. The Galium pusillum group represents a rare example of an ecologically diverse and ploidy‐variable species complex that exhibits substantial diversity in deglaciated northern Europe. Using AFLP and plastid and nuclear DNA sequences of 67 populations from northern, central, and western Europe with known ecological preferences, we elucidate the evolutionary history of lineages restricted to deglaciated areas and identify the eco‐geographic partitioning of their genetic variation. We reveal three distinct endemic northern lineages: (i) diploids from southern Sweden + the British Isles, (ii) tetraploids from southern Scandinavia and the British Isles that show signs of ancient hybridization between the first lineage and populations from unglaciated central Europe, and (iii) tetraploids from Iceland + central Norway. Available evidence supports a stepwise differentiation of these three lineages that started at least before the last glacial maximum by processes of genome duplication, interlineage hybridization and/or allopatric evolution in distinct periglacial refugia. We reject the hypothesis of more recent postglacial speciation. Ecological characteristics of the populations under study only partly reflect genetic variation and suggest broad niches of postglacial colonizers. Despite their largely allopatric modern distributions, the north‐European lineages of the G. pusillum group do not show signs of rapid postglacial divergence, in contrast to most other northern endemics. Our study suggests that plants inhabiting deglaciated areas outside the Arctic may exhibit very different evolutionary histories compared with their more thoroughly investigated high‐arctic counterparts.     

走出歌德的阴影: 迈向更加科学的植物系统学

传统的植物学理论中, 被子植物雌蕊的基本单位心皮被认为是变态的叶(即大孢子叶)通过纵向对折和内卷演化而来。该理论造成了被子植物和裸子植物之间不可逾越的鸿沟。近年来提出的一统理论认为被子植物的心皮由长胚珠的枝和包裹这个枝的叶共同组成, 从而弥合了被子植物与裸子植物之间的鸿沟。最近, 当代植物学界两大权威人物Peter R. Crane和Peter K. Endress分别撰文, 发表了不同于传统理论的观点。Endress认为, 心皮由胚珠和叶性器官组成; 而Crane认为, 所有的胚珠都长在枝上。结合二者的结论, 不难得出“心皮实际上等同于一个长胚珠的枝加上一个叶”的论断。这在某种意义上等于认同了一统理论的观点。两位权威人物观点的转变预示着植物学理论将很快发生根本性的转变。该文向国内植物学同行通报这一最新动态, 以期让我国学者能够了解最新理论。     

A phylogenomic analysis of Lonicera and its bearing on the evolution of organ fusion

Premise

The ~140 species of Lonicera are characterized by variously fused leaves, bracteoles, and ovaries, making it a model system for studying the evolution and development of organ fusion. However, previous phylogenetic analyses, based mainly on chloroplast DNA markers, have yielded uncertain and conflicting results. A well-supported phylogeny of Lonicera will allow us to trace the evolutionary history of organ fusion.

Methods

We inferred the phylogeny of Lonicera using restriction site–associated DNA sequencing (RADSeq), sampling all major clades and 18 of the 23 subsections. This provided the basis for inferring the evolution of five fusion-related traits.

Results

RADSeq data yielded a well-resolved and well-supported phylogeny. The two traditionally recognized subgenera (Periclymenum and Chamaecerasus), three of the four sections (Isoxylosteum, Coeloxylosteum, and Nintooa), and half of the subsections sampled were recovered as monophyletic. However, the large and heterogeneous section Isika was strongly supported as paraphyletic. Nintooa, a clade of ~22 mostly vine-forming species, including L. japonica, was recovered in a novel position, raising the possibility of cytonuclear discordance. We document the parallel evolution of fused leaves, bracteoles, and ovaries, with rare reversals. Most strikingly, complete cupules, in which four fused bracteoles completely enclose two unfused ovaries, arose at least three times. Surprisingly, these appear to have evolved directly from ancestors with free bracteoles instead of partial cupules.

Conclusions

We provide the most comprehensive and well-supported phylogeny of Lonicera to date. Our inference of multiple evolutionary shifts in organ fusion provides a solid foundation for in depth developmental and functional analyses.

     

New fossil mantidflies (Insecta: Neuroptera: Mantispidae) from the Mesozoic of north‐eastern China

Abstract:  Three new genera and four new species of the extinct mantidfly subfamily Mesomantispinae (Insecta: Neuroptera: Mantispidae) are described from the Lower Cretaceous Yixian Formation of Liaoning and the Middle Jurassic Jiulongshan Formation of Inner Mongolia: Archaeodrepanicus nuddsi gen. et sp. nov., A. acutus gen. et sp. nov., Sinomesomantispa microdentata gen. et sp. nov., (Yixian Formation) and Clavifemora rotundata gen. et sp. nov. (Jiulongshan Formation). The specimens described herein represent the first Mesozoic mantidfly compression fossils to have body parts preserved, including the specialized raptorial forelegs articulated to the prothorax anteriorly, an autapomorphy of the family. These new taxa further confirm the placement of the subfamily Mesomantispinae within the family Mantispidae; however, the monophyly of Mesomantispinae has not been confirmed, and it is likely that it will prove to be paraphyletic.     

Botany without borders: barcoding in focus

This recent meeting, held on the campus of the University of British Columbia, attracted 1200 delegates and a vast array of talks, but was notable for a remarkable showing of talks and posters on DNA barcoding in plants, spread through many sessions. The Canadian Centre for DNA Barcoding defines barcoding as ‘species identification and discovery through the analysis of short, standardized gene regions known as DNA barcodes’. This approach is somewhat controversial in animals ( Rubinoff et al., 2006 ), although it has been shown to be useful and reliable in many metazoan taxa ( Meyer & Paulay 2005 ; Hajibabaei et al., 2007 ), in which the mitochondrial cytochrome oxidase I (COI) gene is used. However, in land plants, COI evolves far too slowly to be useful, and there is no obvious single universal alternative ( Fazekas et al., 2008 ). Genes that work well in one taxon may perform poorly in other taxa. Additionally, some perfectly good plant species, reproductively isolated and morphologically and ecologically distinct, are too young to show much sequence divergence at most loci. Nevertheless, as we saw at this conference, progress has been made towards identifying genes that serve many of the functions of DNA barcodes, at least in some plant taxa.     

Contributions of plant molecular systematics to studies of molecular evolution

Dobzhansky stated that nothing in biology makes sense except in the light of evolution. A close corollary, and the central theme of this paper, is that everything makes a lot more sense in the light of phylogeny. Systematics is in the midst of a renaissance, heralded by the widespread application of new analytical approaches and the introduction of molecular techniques. Molecular phylogenetic analyses are now commonplace, and they have provided unparalleled insights into relationships at all levels of plant phylogeny. At deep levels, molecular studies have revealed that charophyte green algae are the closest relatives of the land plants and suggested that liverworts are sister to all other extant land plants. Other studies have suggested that lycopods are sister to all other vascular plants and clarified relationships among the ferns. The impact of molecular phylogenetics on the angiosperms has been particularly dramatic – some of the largest phylogenetic analyses yet conducted have involved the angiosperms. Inferences from three genes (rbcL, atpB, 18S rDNA) agree in the major features of angiosperm phylogeny and have resulted in a reclassification of the angiosperms. This ordinal-level reclassification is perhaps the most dramatic and important change in higher-level angiosperm taxonomy in the past 200 years. At lower taxonomic levels, phylogenetic analyses have revealed the closest relatives of many crops and model organisms for studies of molecular genetics, concomitantly pointing to possible relatives for use in comparative studies and plant breeding. Furthermore, phylogenetic information has contributed to new perspectives on the evolution of polyploid genomes. The phylogenetic trees now available at all levels of the taxonomic hierarchy for angiosperms and other green plants should play a pivotal role in comparative studies in diverse fields from ecology to molecular evolution and comparative genetics.     

Systematics of the Saharo‐Arabian clade of the Palearctic naked‐toed geckos with the description of a new species of Tropiocolotes endemic to Oman

Geckos are one of the most species‐rich, abundant, and widely distributed of all Squamata lineages and present several characteristics that have made them favorite model organisms for biogeographical, ecological, physiological, and evolutionary studies. One of the key aspects of any comparative study is to have a robust, comprehensive phylogeny, and an updated taxonomy. Recently, the Infraorder Gekkota has been the subject of several phylogenetic analyses and taxonomic revisions at different levels. Despite all these phylogenetic and taxonomic advances, there are still some groups whose systematics and taxonomy remain highly problematic. Maybe one of the most poorly resolved groups in spite of decades of intensive research by many herpetologists are the so‐called Palearctic naked‐toed geckos of the family Gekkonidae. This group of nocturnal geckos distributed from Mauritania across North Africa, Arabia, southwestern and central Asia to northern India, western China and southern Mongolia is characterized by the synapomorphy of lack of adhesive subdigital pads. Within the Palearctic naked‐toed geckos, the Saharo‐Arabian clade comprised by the genera Pseudoceramodactylus, Stenodactylus, and Tropiocolotes is the clade with the largest distribution range. At the same time, it is one of the problematic groups, presenting poorly supported phylogenetic relationships, with the genus Tropiocolotes being recovered non‐monophyletic in all analyses despite its morphological uniformity. To reassess the phylogeny of the Palearctic naked‐toed geckos with a special interest in the systematics of Tropiocolotes, we assembled a dataset comprising 298 gecko specimens from 283 different species (including all Tropiocolotes species but one) belonging to 122 of a total of 124 described gecko genera. This dataset included the nuclear c‐mos, ACM4, RAG1, RAG2, and PDC and the mitochondrial ND2 gene. To further investigate the relationships within Tropiocolotes and to revise the systematics of the south Arabian endemic species Tropiocolotes scorteccii, we used an integrative approach including information from the nuclear MC1R and c‐mos, the mitochondrial 12S, 16S, cytb genes, and morphological data from nine of the 10 described Tropiocolotes species. The phylogenetic analyses of the Gekkota dataset recovered a similar topology for the Palearctic naked‐toed geckos to previous studies, but in this case, Tropiocolotes was recovered monophyletic in all analyses, with high support in two of them. The results of the analyses of three datasets specifically assembled to test the effect of both gene sampling and taxon sampling in the monophyly of Tropiocolotes, and the internal relationships of the Palearctic naked‐toed geckos clearly showed that both the number and kind of characters (nuclear or mitochondrial data) and the number of taxa played a fundamental role in recovering the correct phylogenetic relationships. The phylogenetic analyses within Tropiocolotes suggested the existence of high levels of undescribed diversity in the south Arabian T. scorteccii, including a new genetically and morphologically distinct species endemic to Oman (Tropiocolotes confusus sp. nov. ). Our study using a large dataset, including several loci and a dense taxon sampling within Gekkota and especially within Tropiocolotes, has proved a valuable strategy to address the monophyly of Tropiocolotes and the relationships within the Saharo‐Arabian Palearctic naked‐toed geckos. The integrative systematic approach including several samples of south Arabian T. scorteccii based on many years of fieldwork has, once more, uncovered a new species endemic to this region. This highlights the importance of this area of Arabia as a reservoir of reptile endemicity and biodiversity, which is likely linked to the high degree of habitat heterogeneity and the effect of the monsoons. Obviously, based on this and previously published evidence, south Arabia represents an area with still high levels of undiscovered diversity.     

Angiosperm leaves associated with Sinocarpus infructescences from the Yixian Formation (mid-Early Cretaceous) of NE China

Typical angiosperm dicot leaves are discovered closely associated with reproductive organs of Sinocarpus decussatus from the Yixian Formation, NE China. Leaves are of first rank, small, with fine texture, and with distinct petiole and lamina. Venation pattern is craspedodromous, of at least three discrete orders of veins irregularly arranged. Leaf margin is serrate, with glandular teeth of chloranthoid type. The new Sinocarpus material is better preserved and more complete than the type specimen. It yields support for previous interpretations of reproductive characters and shows that the inflorescences were compound, perhaps combining alternate and opposite phyllotaxis, and that seeds were arranged in two rows, each row with about ten seeds. While these new reproductive characters do not provide further resolution to the systematic assignment of Sinocarpus, the associated leaves, believed to be from the same plant, support previous interpretation of Sinocarpus as a basal eudicot, and particularly close to Ranunculales.     

The pollen cones of Ginkgo from the Early Cretaceous of China, and their bearing on the evolutionary significance

A well-preserved pollen cone of the genus Ginkgo was found in the Yixian Formation (Early Cretaceous) of Liaoning Province, China, and is described as the new species Ginkgo liaoningensis . The pollen cone, catkin-like, consists of a main axis bearing scales at its base and spirally arranged sporophylls bearing 3–4 (−2) oval or elliptical sporangia. The sporangia are pendulous and dehiscent by a longitudinal slit. The mature pollen grains are monocolpate and elongate-elliptical, and the juvenile pollen grains are found in the tetrad stage. The characteristics of G. liaoningensis are very similar to those of the living Ginkgo biloba , but the sporophylls of G. liaoningensis bear 3–4 (−2) sporangia, whereas those of G. biloba bear mostly two sporangia. G. liaoningensis differs from fossil cones of Ginkgo huttoni from the Jurassic of Yorkshire, UK, and an unnamed specimen of Ginkgo from the Upper Cretaceous of Alberta, Canada, in the size and number of sporangia. The comparison between G. liaoningensis (fossil) and G. biloba (living) supports the reduction hypothesis of ovule organs in Ginkgo , with the number of sporangia having experienced the process of reduction from three or four to two since the Early Cretaceous.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 152 , 133–144.     

中国植物系统和进化生物学研究进展

植物系统和进化生物学旨在探讨植物物种多样性的起源、多样化及其进化的机制, 是综合性越来越强的研究领域。2017年在深圳召开的第19届国际植物学大会(IBC 2017)为中国学者提供了一次难得的展示自身实力的机会和舞台, 同时也极大地推动了中国植物系统与进化生物学领域的研究。值此大会召开5周年之际, 本文拟就中国系统和进化生物学领域近年来取得的主要进展和突破做一简要回顾, 以帮助读者了解中国植物系统和进化研究的发展态势, 并在此基础上展望未来该领域的发展趋势以及面临的机遇和挑战。在过去5年中, 中国学者在植物系统与进化生物学领域的各个方面均取得了令人鼓舞的成绩和突破, 涉及植物起源和物种多样性格局的演变、植物分类和系统发生重建、物种形成和适应性进化、种间互作和协同进化、新性状的起源及其进化发育机制、植物多倍化的机制和多倍体进化、物种濒危机制和物种保护以及栽培植物的起源和驯化等等。这些研究成果不仅在数量上而且在质量上有显著提升, 受到国际学界的广泛关注, 意味着中国学者已经成为国际该领域研究的重要力量, 并将在国际植物系统和进化研究领域发挥更大的作用。     

Description of a new long‐snouted beaked whale from the Late Miocene of Denmark: evolution of suction feeding and sexual dimorphism in the Ziphiidae (Cetacea: Odontoceti)

A new genus and species of Ziphiidae, Dagonodum mojnum gen. nov., sp. nov., from the upper Miocene Gram Formation (c. 9.9–7.2 Ma) represents the first occurrence of the family in Denmark. This long‐snouted ziphiid is characterized by two pairs of mandibular tusks, the Eustachian outlet that approximately levels with the dorsalmost margin of the posterior portion of the involucrum, and the left trapezoid nasal with a posteromedial projection into the frontal. A phylogenetic analysis including 25 species and 69 characters was conducted. Dagonodum mojnum is placed in a basal ziphiid clade as the sister taxon of Messapicetus. The specimen is probably a male, because it has enlarged tusks. Alternatively, females could also be involved in fights and develop erupted tusks as in the extant Berardius. Although less well supported, this interpretation proposes that aggressive interactions were not restricted to males in stem‐ziphiids. With a thickened thyrohyal and the presence of a precoronoid crest, D. mojnum was able to use suction feeding, but was less specialized to it compared to extant ziphiids. The elongated neck of D. mojnum less optimized to perform deep dives, and the shallow depth at which the Gram Formation was deposited corroborates the hypothesis that at least part of the stem‐ziphiids were not regular deep divers.     

Sinocarpus decussatus gen. et sp. nov., a new angiosperm with basally syncarpous fruits from the Yixian Formation of Northeast China

An Early Cretaceous angiosperm, Sinocarpus decussatus gen. et sp. nov., is described from the Yixian Formation in Liaoning, China, based on an infructescence fragment. It is probably ebracteate, consisting of one terminal fruit and two pairs of pedicellate lateral fruits arranged decussately. Carpels are probably borne on a small convex receptacle. There are no distinct remnants of a perianth although fragments observed at the base of immature fruits may represent perianth parts. No remnants of androecial parts have been observed, and it is unknown whether the flowers were unisexual or bisexual. The basally syncarpous ovary is superior and composed of 3 or 4 carpels. Each carpel contains about 10 anatropous ovules/seeds borne along the linear placentae. Seeds are flattened and embedded in a thick amorphous material. The character combination of Sinocarpus indicates a systematic position among the basal grade of eudicots or the basal core eudicots, and particularly shows similarities to extant Ranunculaceae, Buxaceae, and Myrothamnaceae, but based on the available data the fossil cannot unambiguously be placed in any modern family.     

Xiphograptus and the evolution of virgella‐bearing graptoloids

Abstract: The virgellar spine is one of the most consistent features of the graptolite sicula. It is present in a large number of graptoloid groups, but evolved separately and independently in these as it is seen from the presence of the spine in either ventral (Axonophora) or dorsal (Phyllograptus, Xiphograptus) position. The evolution of the virgellar spine in the Pan‐Bireclinata in the Upper Dapingian to Lower Darriwilian time interval is known to follow four main steps, from a simple rutellum, through a lamelliform rutellum and a lanceolate virgella to the true virgellar spine. For the xiphograptids and in Phyllograptus, the origin and early development is less well documented, but appears to follow a similar path. However, the individual stages are condensed, and a true virgellar spine emerges already in the Floian time interval. A virgellar spine was found in Didymograptellus bifidus, necessitating a revision of the diagnosis of the genus Didymograptellus. A number of species of the virgellate genera Xiphograptus, Yutagraptus and Didymograptellus are described from isolated material for the first time. The species are useful for the biostratigraphic correlation of endemic mid‐continent North American faunas with the Pacific Type faunal realm. Xiphograptus artus sp. nov., Didymograptellus primus sp. nov. and Didymograptellus cowheadensis sp. nov. from the Cow Head Group of western Newfoundland are described as new.     

Diversity patterns amongst herbivorous dinosaurs and plants during the Cretaceous: implications for hypotheses of dinosaur/angiosperm co‐evolution

Abstract Palaeobiologists frequently attempt to identify examples of co‐evolutionary interactions over extended geological timescales. These hypotheses are often intuitively appealing, as co‐evolution is so prevalent in extant ecosystems, and are easy to formulate; however, they are much more difficult to test than their modern analogues. Among the more intriguing deep time co‐evolutionary scenarios are those that relate changes in Cretaceous dinosaur faunas to the primary radiation of flowering plants. Demonstration of temporal congruence between the diversifications of co‐evolving groups is necessary to establish whether co‐evolution could have occurred in such cases, but is insufficient to prove whether it actually did take place. Diversity patterns do, however, provide a means for falsifying such hypotheses. We have compiled a new database of Cretaceous dinosaur and plant distributions from information in the primary literature. This is used as the basis for plotting taxonomic diversity and occurrence curves for herbivorous dinosaurs (Sauropodomorpha, Stegosauria, Ankylosauria, Ornithopoda, Ceratopsia, Pachycephalosauria and herbivorous theropods) and major groups of plants (angiosperms, Bennettitales, cycads, cycadophytes, conifers, Filicales and Ginkgoales) that co‐occur in dinosaur‐bearing formations. Pairwise statistical comparisons were made between various floral and faunal groups to test for any significant similarities in the shapes of their diversity curves through time. We show that, with one possible exception, diversity patterns for major groups of herbivorous dinosaurs are not positively correlated with angiosperm diversity. In other words, at the level of major clades, there is no support for any diffuse co‐evolutionary relationship between herbivorous dinosaurs and flowering plants. The diversification of Late Cretaceous pachycephalosaurs (excluding the problematic taxon Stenopelix) shows a positive correlation, but this might be spuriously related to poor sampling in the Turonian–Santonian interval. Stegosauria shows a significant negative correlation with flowering plants and a significant positive correlation with the nonflowering cycadophytes (cycads, Bennettitales). This interesting pattern is worthy of further investigation, and it reflects the decline of both stegosaurs and cycadophytes during the Early Cretaceous.     

恒山种子植物区系地理成分分析

恒山位于山西北部,有种子植物834种,隶属于342属、84科。种子植物属、种区系成分复杂,比较分析属、种的区系成分,得出恒山以温带成分占优势,在诸多温带成分中北温带分布型、旧世界分布型的属数和温带亚洲分布型、东亚分布型的种数占较高百分比。中国特有种的分布亚型以华北分布亚型种数最多,其次是西北－华北－东北分布亚型和西南－西北－华北分布亚型。     

Pogonomyrmexcunicularius as the keystone disperser of elaiosome‐bearing Jatropha excisa seeds in semi‐arid Argentina

Myrmecochory or seed dispersal by ants is often described as a diffuse mutualism, because many of the ant species that function as partners are considered to be similar in terms of the frequency and consequences of their interactions. In this work, we test this assumption by conducting ant community surveys and seed removal experiments in six study sites located within a semi‐arid region of northwest Argentina. At each site, we characterized the ant assemblage that interacted with the seeds of Jatropha excisa Griseb. (Euphorbiaceae), an ant‐dispersed native shrub. Our results demonstrate that seed removal was dominated by one species, Pogonomyrmex cunicularius Mayr (Hymenoptera: Formicidae: Myrmicinae), which was responsible of 84% of the observed seed removal events. Although several ant species were attracted to the elaiosome‐bearing seeds of J. excisa, seed removal did not depend on ant community composition (species richness and ant activity) but was significantly influenced by the abundance of P. cunicularius. Its physical, behavioral, and ecological attributes are common with other ant species that have been characterized as keystone seed dispersers in other regions of the world. Nest feeding with marked seeds revealed that once P. cunicularius ants consume the elaiosomes, seeds are left inside the nests undamaged and at an appropriate depth for emergence. Our results support the hypothesis that myrmecochory is often an unevenly diffuse mutualism (i.e., one partner species is particularly important) and that at a local scale P. cunicularius is the keystone seed disperser of J. excisa.     

A phylogenetic study of chthamaloids (Cirripedia; Thorcica; Chthamaloidae) based on 16S rDNA and COI sequence analysis

The sequences of gene fragments encoding cytochrome  c oxidase subunit I (COI) and 16S rDNA were obtained and used to construct phylograms of eight taxa of chthamaloid barnacles using the scalpelloid Calantica as an out-group. The phylograms support the basal position of Catomerus within the chthamaloids . Analysis of 16S rDNA shows that Octomeris and the four-plated barnacle Chamaesipho are located on the same clade, while Chthamalus , Euraphia and Tetrachthamalus are located on a second clade, indicating that reduction in the number of shell plates occurred twice in the evolution of the chthamaloids. The topology of phylograms based on COI sequences is poorly resolved: 93% of third position nucleotides in this fragment are polymorphic while the amino acid sequences are strictly conserved. We assume that in the chthamaloids, at least at the generic level, polymorphism in the COI gene is saturated beyond phylogenetic information and cannot resolve the phylogenetic relationships within this superfamily.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 39–45.