The beginnings of rye (<Emphasis Type="Italic">Secale cereale</Emphasis>) cultivation in the East Baltics

In this paper we review the earliest Secale (rye) records, both pollen and macroremains, from the eastern Baltic region (northeast Poland, Lithuania, Latvia, Estonia and Finland) in order to understand the processes evident in the beginnings of rye cultivation. By taking note of the abundance of recovered Secale grains and pollen in relation to other cereals found in published archaeobotanical data, we try to understand when rye began to be used regionally as a staple food. The clarification of the timing of Secale in the East Baltic, that had social and economic implications, is of particular importance. In this publication we also present a radiocarbon date directly derived from dating a Secale grain from a Roman period hillfort in Lithuania. The date obtained constitutes the earliest record of Secale in the eastern Baltic region, showing that rye cultivation traditions and concomitant innovations in agricultural technology started there much earlier than previously suggested.     

The first archaeobotanical evidence of <Emphasis Type="Italic">Lagenaria siceraria</Emphasis> from the territory of Hungary: histology,phytoliths and (a)DNA

Bottle gourd (Lagenaria siceraria (Molina) Standl.) is accepted as typical ‘New World’ cultivated economic plant. Currently, two subspecies are known: L. siceraria ((Molina) Standl.) ssp. siceraria has an African origin, whilst ssp. asiatica is recognized to be originating from Asian territories. It only seldom appears in European archaeological contexts, however finds from the Roman period appear sporadically. Part of a Late Middle Age (14th–15th century) settlement was excavated near the town of Pócspetri (SE Hungary) and one of the refuse pits contained waterlogged remains of several dozen dicot leaves and small sized branches (e.g. Populus sp.). In addition an entire dog skeleton and an apparently 10 cm by 7 cm bottle gourd pericarp fragment were also found in a well-preserved pot. This fortunate recovery accounts for the first evidence of bottle gourd in the archaeobotanical record of Hungary and Eastern Europe. Due to its favourable preservation not only precise morphological analysis could be undertaken, but ancient DNA (aDNA) extraction, PCR amplification and sequencing were used to identify more closely its possible origin and taxonomic relations. Different diagnostic phytolith morphotypes of the pericarp were matched to reference material phytolith assemblages. The macro-archaeobotanical record of the feature reflects the botanical elements of the natural environment of this medieval site and places the unique bottle gourd find in context.     

Biology,host preferences and fitness of <Emphasis Type="Italic">Oulema melanopus</Emphasis> (Coleoptera: Chrysomelidae), a recent invasive pest in Western Canada

The developmental parameters and fitness of a recent invasive insect pest of cereals in western Canada, the cereal leaf beetle, Oulema melanopus (L.) (Coleoptera: Chrysomelidae), were compared on live plants and excised leaves of commercial cultivars of potential cereal hosts including wheat (winter and spring), oats, barley, corn, rye and triticale. Host preference and utilization within the fundamental host range of O. melanopus differed. The biological parameters differed significantly when the larvae were reared on excised tissues versus on live host plants. In both studies, wheat (winter and spring), oat (cv. Morgan) and barley were the most preferred hosts in terms of development, survivorship, adult weights and fecundity. Prolonged development with low fitness gains was noted on corn. Although the development on hosts such as rye and triticale was prolonged and adult fitness was low, the survivorship was high on these hosts. Hence, these crops can act as secondary hosts for the beetle in its new eco-region. Larvae fed foliage of Waldern, a local oat cultivar, had increased developmental time and lower survivorship compared with other cereal hosts. Despite differences in fitness gains among hosts, similar numbers of eggs were laid on all hosts. Hence, the oviposition choice of O. melanopus may not be driven by fitness gains alone and it may indicate adaptive strategy to hosts in newer environments.     

Toxinogenicity of<Emphasis Type="Italic">Microdochium nivale (Fusarium nivale)</Emphasis> isolates from cereals in Poland

Microdochium nivale (Fusarium nivale) was found to be frequently occuring in Poland pathogen of small grain cereals heads, causing symptoms similar to those observed after infection ofFusarium species. In consecutive years since 1985 till 1989 the following percentage of wheat and rye ears infected withM. Nivale and withFusarium head blight symptoms was found: 34%, 21%, 42%, 9%, 46% (wheat) and 57%, 43%, 65%, 4%, 47% (rye) heads.However, in naturally infected rye and wheat samples (kernels and chaff), we did not detect toxins usually present in samples infected with fungi of genusFusarium — such as deoxynivalenol and derivatives. TypicalFusarium trichothecene metabolites were also not present in cultures of 11M. nivale strains, growing 3–5 weeks on rice (45% water content) at 20°C. Cultures of two typical isolates on wheat grain (strain KF 1124) and on rice (KF 245) were found to be non toxic to broiler chickens when present in amount 20–40% in their diet. It can be concluded thatM. nivale (F. nivale) representatives in Poland did not produce toxic metabolites neither under laboratory condition nor after cereal ears infection under field conditions.     

Geometric morphometric analysis of <Emphasis Type="Italic">Setaria italica</Emphasis> (L.) P. Beauv. (foxtail millet) and <Emphasis Type="Italic">Brachiaria ramosa</Emphasis> (L.) Stapf. (browntop millet) and its implications for understanding the biogeography of small millets

Setaria italica (L.) P. Beauv. (foxtail millet) was originally domesticated in northern China. The time and route of its introduction into South Asia is currently unclear due to the possible confusion with autochthonous Brachiaria ramosa (L.) Stapf. (browntop millet). Geometric morphometrics (GM) offer an alternative to traditional archaeobotanical methods to distinguish between these two small millet species. This study aims at finding a method to securely distinguish among charred caryopses of S. italica and B. ramosa, testing its validity on archaeobotanical assemblages and proposing a new approach for studying the dispersion of S. italica throughout Eurasia. Modern S. italica (n = 35) and B. ramosa (n = 34) caryopses and 15 archaeological specimens from a 5th millennium bp archaeological occupation site in northwestern India were analysed. Archaeological and modern caryopses (before and after charring) were photographed with a Leica EZ4D stereoscope, and TPSdig software was used to scale the photographs and manually apply a configuration of three landmarks and six semi-landmarks onto the contours of the embryos. Multivariate statistics were carried out to analyse the shape differences between modern S. italica and B. ramosa and to classify the archaeological specimens. The results show that the shape of the embryo of both species can be clearly distinguished using a GM-approach, both before and after charring. However, charring tends to smooth the shape differences between the two groups, which may affect the interpretation of archaeobotanical assemblages. The comparison between modern and archaeological caryopses suggests that S. italica was not present in northwestern India during the 5th millennium bp.     

Evolutionary divergence of the rye <Emphasis Type="Italic">Pm17</Emphasis> and <Emphasis Type="Italic">Pm8</Emphasis> resistance genes reveals ancient diversity

Key message

We have isolated a novel powdery mildew resistance gene in wheat that was originally introgressed from rye. Further analysis revealed evolutionary divergent history of wheat and rye orthologous resistance genes.

Abstract

Wheat production is under constant threat from a number of fungal pathogens, among them is wheat powdery mildew (Blumeria graminis f. sp. tritici). Deployment of resistance genes is the most economical and sustainable method for mildew control. However, domestication and selective breeding have narrowed genetic diversity of modern wheat germplasm, and breeders have relied on wheat relatives for enriching its gene pool through introgression. Translocations where the 1RS chromosome arm was introgressed from rye to wheat have improved yield and resistance against various pathogens. Here, we isolated the Pm17 mildew resistance gene located on the 1RS introgression in wheat cultivar ‘Amigo’ and found that it is an allele or a close paralog of the Pm8 gene isolated earlier from ‘Petkus’ rye. Functional validation using transient and stable transformation confirmed the identity of Pm17. Analysis of Pm17 and Pm8 coding regions revealed an overall identity of 82.9% at the protein level, with the LRR domains being most divergent. Our analysis also showed that the two rye genes are much more diverse compared to the variants encoded by the Pm3 gene in wheat, which is orthologous to Pm17/Pm8 as concluded from highly conserved upstream sequences in all these genes. Thus, the evolutionary history of these orthologous loci differs in the cereal species rye and wheat and demonstrates that orthologous resistance genes can take different routes towards functionally active genes. These findings suggest that the isolation of Pm3/Pm8/Pm17 orthologs from other grass species, additional alleles from the rye germplasm as well as possibly synthetic variants will result in novel resistance genes useful in wheat breeding.

     

Predatory Lady Beetles (Coleoptera,Coccinellidae) in Cereal Agrocenoses in the Northern Forest-Steppe of West Siberia and the Influence of Agrotechnical Methods on Them

Predatory lady beetles (Coccinellidae) form one of the prevalent and effective groups of entomophages in the forest-steppe zone of West Siberia. Among 17 species of predatory lady beetles recorded in cereal agrocenoses and on bird cherry trees, Propylea quatuordecimpunctata, Coccinella septempunctata, Hippodamia tredecimpunctata, H. variegata, and H. arctica are predominant. This paper presents data on the species composition and ecological features of lady beetles in agrocenoses of winter rye, spring wheat, and oats as well as on the impact of agrotechnical methods (the main treatment of soil, application of chemicals, and forecrops) and cultivation technology on the abundance of lady beetles.     

Overview of the origins and history of the five major cucurbit crops: issues for ancient DNA analysis of archaeological specimens

The gourd family, Cucurbitaceae, contains five vegetable crops of worldwide importance, the pumpkins and squash (Cucurbita spp.), watermelons (Citrullus lanatus), melons (Cucumis melo) and cucumbers (Cucumis sativus). Here is presented a synopsis of the origin and history of these cucurbit crops. Historical records of the use of cucurbits by people take the form of archaeobotanical finds, iconography and literature. The weight of the evidence indicates that Cucurbita spp. were first cultivated in the Americas at least 10,000 years ago, and that by 1492 ce a number of cultivar-groups of pumpkins and squash had been developed by indigenous American peoples. Watermelons were cultivated in northeastern Africa at least 4,000 years ago, first probably as a source of fresh water. Melons and cucumbers are native to Asia, probably initially cultivated for the use of the young fruits as vegetables. Melons spread to eastern Africa at an early date, but cucumbers are probably a more recent domesticate and spread westwards later, reaching Europe in early medieval times. Sequencing of cucurbit plant genomes and advances in ancient DNA research offer much promise for obtaining an improved assessment of cucurbit crop origins, specifically the genetic constitution and geographical home of ancestral source populations. Next-generation genomic sequencing, if applied to an appropriate array of archaeological cucurbit remains and modern germplasm, could contribute much to the understanding of the history and evolution under domestication of cucurbit crops.     

Cultivation strategies at the ancient Luanzagangzi settlement on the easternmost Eurasian steppe during the late Bronze Age

A significant body of recent research shows that the first east–west transmission of cereal crops, Triticum spp. (wheat) and Hordeum spp. (barley) from the west and millets (Setaria italica, foxtail millet, and Panicum miliaceum, common millet) from the east, took place sometime around the start of the 5th millennium bp, with part of the most likely route lying along the Tianshan mountains in northern Xinjiang, China. Here the dominant economic adaptation is, and was in prehistory, not crop-based agriculture but transhumant pastoralism. The site of Luanzagangzi (ca. 3,300–2,900 cal bp) on the northern slope of the Tianshan is one of only a handful of Bronze Age sites in Xinjiang with evidence for well-established crop cultivation. In this paper, we report on ten samples collected for phytolith analysis from a 4 m deep profile at Luanzagangzi. The results show evidence that a range of cereal crops was being grown (multi-cropping), Triticum spp., Hordeum spp., Setaria italica and Panicum miliaceum. Pooideae, Paniceae woody plants, Phragmites (reed) and Cyperaceae (sedges) were presumably also exploited for subsistence purposes in this area. We speculate that the strategy of growing a range of crops, wheat/barley, common millet and foxtail millet was adopted by the Bronze Age population in this region as a supplement to herding. The findings of this study help us to understand the dispersal of cultivation strategies across the Eurasian steppe via the Xinjiang region, and the communication between China and the West in the late Bronze Age.     

Wild fruit use among early farmers in the Neolithic (5400–2300 cal <Emphasis Type="SmallCaps">bc</Emphasis>) in the north-east of the Iberian Peninsula: an intensive practice?

The archaeobotanical record of 24 sites from the Neolithic period (5400–2300 cal bc) in the north-east of the Iberian Peninsula is evaluated. Remarkable amounts of data have recently been obtained for the early and middle Neolithic phases. Most of the studied sites were dry and they only yielded charred plant material. Among dry sites, several types of context were evaluated: dwelling areas, hearths, roasting pits and byres. Material was also analysed from a waterlogged cultural layer of one early Neolithic lakeshore site, La Draga. Quercus sp. (acorns), Corylus avellana L. (hazelnuts), Pistacia lentiscus L. (mastic fruits) and Vitis vinifera L. var. sylvestris (wild grapes) were among the most frequently encountered fruits and seeds. Their presence in the archaeobotanical record clearly maps their past ecological distribution in the region. There are differences observed between the charred dry-land material and the waterlogged uncharred material. Wild fruits were mostly present in an uncharred state in La Draga. Therefore, their consumption could go unnoticed in dry sites when fruits were eaten raw or without roasting. Larger amounts of charred remains of certain wild fruits like acorns and hazelnuts found in mountain areas are highlighted as potential evidence of the regular practice of roasting, potentially indicating regional traditions. All in all, our results support an intensive wild plant use at least during the first 1,300 years of the Neolithic period. Evidence of wild plant food consumption becomes scanty towards the second phase of the middle and the late Neolithic (4th and 3rd millennium cal bc). This, however, might also be due to taphonomic reasons.     

Rate of consumption,biological parameters,and population growth capacity of <Emphasis Type="Italic">Orius laevigatus</Emphasis> fed on <Emphasis Type="Italic">Spodoptera exigua</Emphasis>

Orius laevigatus (Fieber) (Hemiptera: Anthocoridae) is already successfully used to control Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae) in protected crops. In the present work, the predatory capacity of O. laevigatus on the eggs and larvae of Spodoptera exigua (Hübner) (Lepidoptera: Noctuidae) as well as the population growth capacity of O. laevigatus fed on eggs of the noctuid were determined. Fourth and 5th instar nymphs had a greater consumption of eggs than younger ones. Females consumed more eggs than males. Only 5th instar nymphs and adults preyed on the neonatal larvae of S. exigua. The intrinsic rate of natural increase did not differ between O. laevigatus fed with S. exigua eggs and those offered eggs of the substitute host Ephestia kuehniella (Zeller) (Lepidoptera: Pyralidae). Thus, O. laevigatus is a good candidate for the biological control of S. exigua, a cosmopolitan pest of many crops.     

High prevalence of zoonotic trematodes in roach (<Emphasis Type="Italic">Rutilus rutilus</Emphasis>) in the Gulf of Finland

The intention to increase roach (Rutilus rutilus) consumption is in focus for ecological and economic reasons in Finland. However, its safety as food has not been considered comprehensively. We collected and artificially digested 85 roach halves originating from the south-eastern coast of Finland, and found trematode metacercariae in 98.8% of the samples. Based on polymerase chain reaction (PCR) and sequencing of amplicons generated from the ITS2 gene region, zoonotic parasites of the family Opistorchiidae were identified as Pseudamphistomum truncatum and Metorchis bilis, and also non-zoonotic Holostephanus dubinini (family Cyathocotylidae) and Posthodiplostomum spp. (family Diplostomidae) were identified. The species identity of other trematodes found is currently being investigated. Mixed infections of several trematode species were common. The prevalence of morphologically identified zoonotic P. truncatum was 46%, and zoonotic M. bilis was found in one sequence sample. The high prevalence of zoonotic trematode metacercariae in roach from the Gulf of Finland is alarming. Only thoroughly cooked roach products can be recommended for human or animal consumption from the area.     

Morphological and genetic characterization of a new cytoplasmic male sterility system (<Emphasis Type="Italic">oxa</Emphasis> CMS) in stem mustard (<Emphasis Type="Italic">Brassica juncea</Emphasis>)

Key message

oxa CMS is a new cytoplasmic male sterility type in Brassica juncea.

Abstract

oxa CMS is a cytoplasmic male sterility (CMS) line that has been widely used in the production and cultivation of stem mustard in the southwestern China. In this study, different CMS-type specific mitochondrial markers were used to confirm that oxa CMS is distinct from the pol CMS, ogu CMS, nap CMS, hau CMS, tour CMS, Moricandia arvensis CMS, orf220-type CMS, etc., that have been previously reported in Brassica crops. Pollen grains of the oxa CMS line are sterile with a self-fertility rate of almost 0% and the sterility strain rate and sterility degree of oxa CMS is 100% due to a specific flower structure and flowering habit. Scanning electron microscopy revealed that most pollen grains in mature anthers of the oxa CMS line are empty, flat and deflated. Semi-thin section further showed that the abortive stage of anther development in oxa CMS is initiated at the late uninucleate stage. Abnormally vacuolated microspores caused male sterility in the oxa CMS line. This cytological study combined with marker-assisted selection showed that oxa CMS is a novel CMS type in stem mustard (Brassica juncea). Interestingly, the abortive stage of oxa CMS is later than those in other CMS types reported in Brassica crops, and there is no negative effect on the oxa CMS line growth period. This study demonstrated that this novel oxa CMS has a unique flower structure with sterile pollen grains at the late uninucleate stage. Our results may help to uncover the mechanism of oxa CMS in Brassica juncea.

     

Comparative ecology of Ostracoda (Crustacea) in two rheocrene springs (Bolu,Turkey)

A total of ten taxa belonging to the class Ostracoda of the Crustacea (Darwinula stevensoni, Candona neglecta, Cypria ophthalmica, Ilyocypris bradyi, Prionocypris zenkeri, Herpetocypris chevreuxi, Psychrodromus olivaceus, Heterocypris incongruens, Scottia pseudobrowniana, Eucypris sp.) were collected from two rheocrene Darwinula stevensoni springs (Çetin Bey and Çaygökp?nar springs) on 15 separate occasions between November 2002 and November 2004. Almost all of the species identified exhibit cosmopolitan distributions – at least in the Holarctic region. The presence of Scottia pseudobrowniana represents the second recording of this species in the ostracod fauna of Turkey. The dominant taxa in both springs was Cy. ophthalmica, I. bradyi, Pr. zenkeri and Ca. neglecta. Correlation analyses suggested a significant positive relationship in relative abundance between I. bradyi, Pr. zenkeri and Cy. ophthalmica. Species composition differed significantly between the upper and lower study sites for each spring, but differences could not be detected between sites at the same elevation across sites. Environmental tolerance index (ETI) values suggest that species with high optima and tolerance ranges show cosmopolitan characteristics.     

Comparative analysis of complete chloroplast genome sequences of two subtropical trees, <Emphasis Type="Italic">Phoebe sheareri</Emphasis> and <Emphasis Type="Italic">Phoebe omeiensis</Emphasis> (Lauraceae)

Phoebe is an economically important genus from the family Lauraceae. It is widely distributed in tropical and subtropical Asia, but systematics of the genus is unclear, and currently there is no species-level phylogeny. Here, we determined the complete chloroplast genome sequences of two species with long-range PCR and next genome sequencing technologies, and identified mutation sites and highly variable regions. These highly variable sites were used to reconstruct the phylogeny. The plastomes of Phoebe sheareri and P. omeiensis were 152, 876, and 152, 855 bp, respectively. Comparative genomic analysis indicated that there are 222 mutation sites including 146 substitutions, 73 indels, and 3 microinversions in both plastomes. Fifty-six single-nucleotide changes were identified in gene-coding regions, and 45 microsatellite sites were found for use in species identification. Fourteen divergence hotspots of 38 variable regions were located. Phylogeny was reconstructed using a Bayesian and maximum likelihood approach for 12 Phoebe species and other five related Lauraceae based on 15 of the highly variable regions including accD-psaI, atpB-rbcL, ndhC-trnV, ndhF-rpl32, petA-psbJ, psaA, psbA-trnH, rbcL, rps8-rpl14, rps16-trnQ, rpl32-trnL, trnC-petN, trnL-trnF, trnS-trnG, and ycf1 indicated that variability in the chloroplast regions proposed as variable is enough to detect divergence events among 12 taxa of Phoebe, and that maybe also useful to help to elucidate further relationships among other taxa of the genus.     

Characterization,genetic diversity,phylogenetic relationships,and expression of the aluminum tolerance <Emphasis Type="Italic">MATE1</Emphasis> gene in <Emphasis Type="Italic">Secale</Emphasis> species

Aluminum (Al) is the main limiting factor for crop production in acidic soils. Efflux of organic acids is one of the mechanisms that determine Al-tolerance, and an Al-activated citrate transporter (multidrug and toxic compound extrusion) MATE1 gene is involved in different species. The contribution of the rye MATE1 gene (ScMATE1) depends on the rye (Secale cereale L.) cultivars and the crosses analyzed; there is no information about different rye species. The cDNA sequences, phylogenetic relationships, Al-tolerance, citrate exudation, and expression of the ScMATE1 gene were analyzed in several cultivars and wild species/subspecies of the Secale genus. Genotypes highly tolerant to Al were found within this genus. For the first time, sequences of the cDNA of the ScMATE1 gene were isolated and characterized in wild ryes. At least two copies of this gene were found likely to be related to Al-tolerance. The sequence comparison of 13 exons of ScMATE1 revealed variability between species, but also inter- and intra-cultivars. Variations were found in the Al-induced expression of ScMATE1 gene, as well as its contribution to Al-tolerance. The pattern of citrate exudation was inducible in most of the species/subspecies studied and constitutive in few. The phylogenetic analysis indicated that ScMATE1 is orthologue of two genes (HvMATE1 and TaMATE1) involved in the Al stress response in barley and wheat, respectively, but not orthologue of SbMATE, implicated in Al-tolerance in sorghum. ScMATE1 is involved in the response to Al stress in ryes, but its contribution to Al-tolerance is complex, and like in other species, there are tolerant and sensitive alleles in the different cultivars and species studied.     

Specific features in using SNP markers developed for allopolyploid wheat

In this work, we analyzed 54 domestic cultivars of hexaploid (common) wheat Triticum aestivum L. (AABBDD genome) and accessions of tetraploid wheats of the Timopheevi group (AAGG) and rye Secale cereale (RR) using 21 SNP markers for common wheat. It was demonstrated that application of the SNP markers developed and verified for particular common wheat cultivars in allele-specific PCR analysis of other cultivars with different geographic origins could lead to an incorrect estimation of the similarity between the genotypes tested. The studied SNP markers of common wheat are inappropriate for analyzing genomes of other cereal species, in particular, T. timopheevii wheats and rye S. cereale.     

Food analysis within the<Emphasis Type="Italic">Fusarium</Emphasis> toxin monitoring programme of Saxony-Anhalt

A 3 yearFusarium andFusarium toxin monitoring programme was established within the food and feed control authorities of Saxony-Anhalt in 2001. The first year’s results of the analysis of deoxynivalenol in cereals and cereal products with assured origin in this federal state, showed a contamination rate of 24% for wheat and wheat products. The contamination incidence reached only 8% in rye and rye products, whereas it was 17% for barley and its products including beer. Zearalenone could be detected only in 2 of 162 analysed samples.     

From the field to the hearth: plant remains from Neolithic Croatia (ca. 6000–4000 cal <Emphasis Type="SmallCaps">bc</Emphasis>)

Until recently the recovery of plant remains in Croatia was rare, resulting in few studies addressing the nature of Neolithic crop cultivation. This paper presents new archaeobotanical data from eleven Neolithic settlements in coastal and continental Croatia. Within continental Croatia, three sites dating to the Star?evo culture (early/middle Neolithic; ca. 6000–5300 cal bc) and six to the Sopot culture (late Neolithic; ca. 5300–4000 cal bc) are examined along with two Hvar culture sites (late Neolithic; ca. 4800–4000 cal bc) located along the coast. Different settlement types are included in the study: open air sites, tells and cave sites. From the data collected the most common crops identified were einkorn, emmer, barley, lentil, pea and flax, as well as the fruits Cornus mas (Cornelian cherry) and Physalis alkekengi (Chinese lantern), which were particularly dominant in the Sopot culture settlements. By examining formation processes, sieved crop processing products and by-products were identified at six of the sites, suggesting that cereals were processed on a day-to-day basis at the household level. In contrast, the remains from the late Neolithic coastal cave site of Turska Pe? suggest two distinct formation processes. At the eastern side of the cave the plant remains suggest that episodes of dung burning occurred, possibly to clear the cave of excess waste during seasonal habitation of the cave by herders and livestock. Towards the back of the cave, cereal remains and higher charcoal densities may suggest an area used for food preparation or cooking.