What makes a plant species specialist in mixed broad-leaved deciduous forests?

Knowledge about relationships between specialization degree of species, i.e. the width of their realized niche and functional traits, may have important implications for the assessment of future population developments under environmental change. In this study, we used a recently introduced method to calculate ecological niche widths of plant species in mixed broad-leaved deciduous forests and to investigate the dependence between niche widths of plants and their functional traits and Ellenberg indicator values. The research is based on a dataset of 4556 phytosociological relevés of mixed broad-leaved deciduous forests in Slovenia. We calculated theta indices for 326 species, which ranks them along a continuous gradient of habitat specialization. For 272 species, we compiled 26 functional traits and Ellenberg indicator values. We found some significant correlations between theta indices of species and their functional traits and Ellenberg indicator values; habitat specialists thrive primarily on the highest altitudes, on colder, dry sites and achieve the age of first flowering later than generalists. They also have smaller seed diameter, lower leaf dry matter content, lower mean canopy height and bigger specific leaf area than generalists. Two species groups, chamaephytes and spring green species, are particularly characterized as specialist species. The added value of our work is in complementing the knowledge about the niche differentiating along different environmental gradients and species coexistence in mixed broad-leaved deciduous forests.     

Vertical distribution of bacterial community is associated with the degree of soil organic matter decomposition in the active layer of moist acidic tundra

The increasing temperature in Arctic tundra deepens the active layer, which is the upper layer of permafrost soil that experiences repeated thawing and freezing. The increasing of soil temperature and the deepening of active layer seem to affect soil microbial communities. Therefore, information on soil microbial communities at various soil depths is essential to understand their potential responses to climate change in the active layer soil. We investigated the community structure of soil bacteria in the active layer from moist acidic tundra in Council, Alaska. We also interpreted their relationship with some relevant soil physicochemical characteristics along soil depth with a fine scale (5 cm depth interval). The bacterial community structure was found to change along soil depth. The relative abundances of Acidobacteria, Gammaproteobacteria, Planctomycetes, and candidate phylum WPS-2 rapidly decreased with soil depth, while those of Bacteroidetes, Chloroflexi, Gemmatimonadetes, and candidate AD3 rapidly increased. A structural shift was also found in the soil bacterial communities around 20 cm depth, where two organic (upper Oi and lower Oa) horizons are subdivided. The quality and the decomposition degree of organic matter might have influenced the bacterial community structure. Besides the organic matter quality, the vertical distribution of bacterial communities was also found to be related to soil pH and total phosphorus content. This study showed the vertical change of bacterial community in the active layer with a fine scale resolution and the possible influence of the quality of soil organic matter on shaping bacterial community structure.     

Ecological ranges and types of rarity in the Kuznetsk Alatau of some <Emphasis Type="Italic">Saussurea</Emphasis> DC. species

An analysis of indicator values of four Saussurea DC. species, S. baicalensis (Adams) B. L. Rob., S. frolowii Ledeb., S. salicifolia (L.) DC., and S. schanginiana (Wydl.) Fisch. ex Serg., have been carried out by the method of indicator scales of soil moisture and nutrient availability and salinity in more than 1600 relevés. The size of their ecological ranges and the values of their competitiveness in phytocenoses are determined. As a result of a comparison of the locality of local populations within the ecological range and their occurrence, the vulnerability of S. baicalensis, S. frolowii, S. salicifolia, and S. schanginiana in the Kuznetsk Alatau is evaluated. The types of rarity for these species in the Kuznetsk Alatau are determined.     

Mammals in Last 30 to 7 ka Interval (Late Pleistocene-Early Holocene) in Southern Uruguay (Santa Lucía River Basin): Last Occurrences,Climate, and Biogeography

Fossiliferous Quaternary sedimentary beds in the Santa Lucía Basin (southern Uruguay) are potentially useful for the study of the last occurrences of extinct taxa, as well as the environmental and climatic patterns in the late Pleistocene to the early Holocene. They have provided a chronological framework (AMS ¹⁴C and Optically Stimulated Luminescence dates), a mammalian diversity and interpretations of last occurrence, the climatic-environmental setting, and some associated biogeographic processes. The ages produced encompass the last 30 to 7 ka interval (latest Pleistocene-early Holocene). The mammalian assemblage (36 genera, 24 species) includes typical South American late Pleistocene mammals, extinct species of extant genera, and some extant species that still exist elsewhere on the continent. The preservation pattern includes articulated and semi-articulated skeletons of large and small mammals. The presence in the southern Uruguayan Pampean area of some mammals currently inhabiting Patagonia, northwest and central Argentina (Dolichotis, Galea, Microcavia, Chaetophractus, Lagostomus, and Vicugna) is explained by the predominance of open areas and cold climates associated with the Last Glacial Maximum. The mammalian record depicts local extinctions or shifting ranges occurring in latest Pleistocene or early Holocene. The sedimentary chronological framework and taphonomic features suggest the persistence into the early Holocene of Eutatus seguini, Morenelaphus brachyceros, Equus neogeus, Hemiauchenia sp., Lama sp., and Vicugna sp. Glyptodon and Glossotherium seem to persist at least to the latest Pleistocene. This pattern can substantiate the hypothesis that some megafauna and large mammals persisted for some millennia alongside people with extinction occurring before, during, and after human colonization.     

Effect of suspended mineral matter on production characteristics of bacterio- and phytoplankton

The effect was determined of organo-mineral detritus (OMD), one of the components of suspended mineral matter in aquatic ecosystems, on the production characteristics of bacterioplankton (bacterial production P _b and destruction of organic matter R _b, as well as bacterial growth efficiency BGE). The relation was determined between these parameters and the ratio of the content of suspended mineral matter M to the total organic carbon content (M/TOC). More active utilization of organic matter by bacterioplankton in the presence of OMD resulted in its positive effect on specific production characteristics of the phytoplankton.     

Courtship in Two Morphotypes of the <Emphasis Type="Italic">Anastrepha fraterculus</Emphasis> (Diptera: Tephritidae) Cryptic Species Complex and their Implications for Understanding Mate Recognition

Ritualized courtship behaviors are used to recognize potential mates and behavioral patterns are inevitably different among populations that demonstrate reproductive incompatibility. We characterized and compared the courtship behaviors of two morphotypes of the cryptic species complex Anastrepha fraterculus: Brazil-1 morphotype and Brazil-3 morphotype. Courtship behaviors were filmed to analyze the behavioral sequences of these two morphotypes during homotypic crossings. The behavioral units Alignment (AL) and Abdominal movements (AB and AB-call) were newly recognized in the courtship ethogram of Anastrepha fraterculus males. The two morphotypes show distinct behavioral sequences leading up to copulation. Some behaviors were repeated frequently during the courtship process, while others were more restricted to the final moments of courtship. The three behavioral units that contributed most to copulation success were Contact, Alignment, and Arrowhead 1 in the Brazil-1 morphotype and Alignment, Arrowhead 1, and Fanning in the Brazil-3 morphotype. Some behavioral routines differed across the two morphotypes. Significant differences were also noted between the frequencies of the behavioral units displayed during courtship in the two morphotypes. The relationships between the pre-zygotic incompatibilities of the Brazil-1 and Brazil-3 morphotypes and the differences between the courtship behaviors of their males are discussed. Our results indicate that behavioral isolation is involved in the process of pre-zygotic reproductive isolation of Brazil-1 and Brazil-3 morphotypes.     

Characterisation of seven <Emphasis Type="Italic">Inocybe</Emphasis> ectomycorrhizal morphotypes from a semiarid woody steppe

Ectomycorrhizas (ECM) of Inocybe species (Inocybaceae, Basidiomycota) formed by three host plant species (Populus alba, Salix rosmarinifolia and Pinus nigra) in a semiarid woody steppe of Hungary were studied. To identify the fungal partners, we performed phylogenetic analyses of nucleotide sequences for the internal transcribed spacer region of nuclear DNA (nrDNA ITS) together with sequences gained from public databases. Seven Inocybe ectomycorrhiza morphotypes were morpho-anatomically characterised. Five morphotypes were identified (I. phaeoleuca, I. psammophila, I. semifulva, I. splendens and I. subporospora), whereas two morphotypes represented unidentified Inocybe species. Differences were discernible among the morphotypes, and they showed general anatomical characteristics of Inocybe ECM, such as the slightly organised plectenchymatic mantle (types A, B and E and the gelatinous C). The ECM of I. subporospora and I. phaeoleuca were detected from the introduced Pinus nigra. These two fungi are probably native to the area but capable of forming a novel ectomycorrhizal association with the invasive host.     

Somatic organic content of the ctenophores <Emphasis Type="Italic">Mnemiopsis leidyi</Emphasis> (Ctenophora: Lobata) and <Emphasis Type="Italic">Beroe ovata</Emphasis> (Ctenophora: Beroida) in early ontogenetic stages

The organic matter content in the eggs and early larvae of the ctenophores Mnemiopsis leidyi and Beroe ovata from the Black Sea was determined using the adapted microtechnique of dichromate oxidation. The content of organic matter in the eggs of M. leidyi (0.25 μg/indiv.) was 5 times less than in B. ovata (1.28 ± 0.29 μg/indiv.). The somatic content of organic matter was 0.25 ± 0.09 μg/indiv. (25.1 ± 8.3 μg/mg, wet wt) for 2-day-old larvae of M. leidyi (0.2–0.3 mm in body length) and 1.37 ± 0.19 μg/indiv. (67.1 ± 5.7 μg/mg wet wt) for larvae of B. ovata (0.4 mm in body length). The specific organic content of larvae of both species steadily decreased with an increase in ctenophore body size and weight, approaching 3–4 μg/mg of wet weight for 2 mm specimens of M. leidyi and 3–5 μg/mg of wet weight for 6 mm B. ovata. The specific organic content of early larvae was 20–30 times higher than that of adult ctenophores. The results of this investigation could be useful in the evaluation of the energy budget for somatic growth and generative production in these species. Calculations indicate that with specific wet weight growth rates of 0.43/day for M. leidyi larvae and 0.29/day for B. ovata larvae, their true organic increases are respectively 30 and 38% less, i.e., no more than 0.31/day for the former and 0.18/day for the latter species.     

Metabolic plasticity of the corals Porites lutea and Diploastrea heliopora exposed to large amplitude internal waves

The metabolic plasticity of the two mounding coral species Porites lutea (Milne-Edwards and Haime, 1860) and Diploastrea heliopora (Lamarck, 1816) was investigated in the Similan Islands (Thailand), an offshore Andaman Sea island group subjected to large amplitude internal waves (LAIW). Nutrient concentrations were highly correlated with LAIW intensity and contributed to 3- and 10-fold higher symbiont densities in P. lutea and D. heliopora, respectively, along with elevated pigment concentrations, protein content, host tissue, and symbiont biomass. The comparison of LAIW-exposed and LAIW-sheltered island faces, and LAIW-intense and LAIW-weak years suggests a species-specific metabolic plasticity to LAIW, where D. heliopora benefits more from increased nutrient and organic matter availability than P. lutea. The ubiquitous LAIW in Southeast Asia and beyond may provide so far unexplored clues to coral acclimatization to disturbances on various scales, and hence, a potential key to coral resilience to climate change.     

<Emphasis Type="Italic">Cannabis</Emphasis> is indigenous to Europe and cultivation began during the Copper or Bronze age: a probabilistic synthesis of fossil pollen studies

Conventional wisdom states Cannabis sativa originated in Asia and its dispersal to Europe depended upon human transport. Various Neolithic or Bronze age groups have been named as pioneer cultivators. These theses were tested by examining fossil pollen studies (FPSs), obtained from the European Pollen Database. Many FPSs report Cannabis or Humulus (C/H) with collective names (e.g. Cannabis/Humulus or Cannabaceae). To dissect these aggregate data, we used ecological proxies to differentiate C/H pollen, as follows: unknown C/H pollen that appeared in a pollen assemblage suggestive of steppe (Poaceae, Artemisia, Chenopodiaceae) we interpreted as wild-type Cannabis. C/H pollen in a mesophytic forest assemblage (Alnus, Salix, Populus) we interpreted as Humulus. C/H pollen curves that upsurged and appeared de novo alongside crop pollen grains we interpreted as cultivated hemp. FPSs were mapped and compared to the territories of archaeological cultures. We analysed 479 FPSs from the Holocene/Late Glacial, plus 36 FPSs from older strata. The results showed C/H pollen consistent with wild-type C. sativa in steppe and dry tundra landscapes throughout Europe during the early Holocene, Late Glacial, and previous glaciations. During the warm and wet Holocene Climactic Optimum, forests replaced steppe, and Humulus dominated. Cannabis retreated to steppe refugia. C/H pollen consistent with cultivated hemp first appeared in the Pontic-Caspian steppe refugium. GIS mapping linked cultivation with the Copper age Varna/Gumelni?a culture, and the Bronze age Yamnaya and Terramara cultures. An Iron age steppe culture, the Scythians, likely introduced hemp cultivation to Celtic and Proto-Slavic cultures.     

The long-term succession of cladoceran fauna and palaeoclimate forcing: A 14,600-year record from Plešné Lake,the Bohemian Forest

A sediment record of cladoceran remains was analysed in a 543 cm long core from Ple?né jezero (Ple?né Lake), the Bohemian Forest, Czech Republic. The core covered the time period from the Oldest Dryas to the present. Littoral and benthic Cladocera included 11 species of the family Chydoridae while three species (Bosmina longispina, Daphnia cf. pulicaria and D. cf. longispina) lived in the open water. Remains of Alona quadrangularis and Chydrous sphaericus occurred in the oldest sediment layers from the beginning of the Bølling chronozone. Bosmina longispina and Daphnia cf. pulicaria appeared about 400 years later. Inorganic sediment accumulated at a relatively high rate of ～ 90 mg cm^?2 yr^?1 at that time, diluting cladoceran remains and organic matter. Remains of Cladocera accumulated at 0.1 to 0.01 of the Holocene rate, making it difficult to observe effects of climate variation on the species structure of Cladocera in the Late-Glacial. Production of remains increased after warming during the Younger Dryas-Preboreal transition at ～11.6 kyr BP, and the proportion of littoral species increased. The most important change in cladoceran fauna occurred at ～10.5 kyr BP and culminated with afforestation of the catchment around 10.3 kyr BP. The domaination of Bosmina longispina lasted for ～250 years. The afforestation occurred concurrently with a decrease in lake water pH. Bosmina longispina and Daphnia cf. pulicaria disappeared, production of cladoceran remains decreased, but biodiversity increased. Planktonic Cladocera were represented by Daphnia cf. longispina during most of the rest of the Holocene. The production of Cladocera never reached the Preboreal level. Since ～ 5 cal. kyr BP, the inferred pH continuously decreased. The final decline was likely caused by cooling during the Little Ice Age and by sulphur emissions from ore smelting. The recent acidification of lake water and impoverishment of aquatic fauna was brought about by emissions of sulphur and nitrogen compounds in the 20^th century.     

Influence of sponge morphology on the composition of the polychaete associated fauna from Rocas Atoll,northeast Brazil

The relationships between the morphology of sponges and variables describing their harbored polychaete fauna were analyzed along Rocas, the only known South Atlantic Atoll, together with the location on host and feeding habits. The identification and quantification of all the associated organisms highlighted the dominance of polychaetes. The adults of the symbiotic species Haplosyllis spongicola were the most dominant sponge endobionts. However, both juveniles and epitokes (reproductive individuals) of H. spongicola were also found, suggesting that this species completes its life cycle inside the host. Polychaete density was significantly greater in lobate sponges than in massive and encrusting forms. Conversely, the highly specific symbiotic mode of life of H. spongicola species seems to play a major role in structuring the composition of the polychaete fauna in relation to sponge morphotypes along Rocas Atoll.     

Linkages of <Emphasis Type="Italic">Firmicutes</Emphasis> and <Emphasis Type="Italic">Bacteroidetes</Emphasis> populations to methanogenic process performance

To identify potential linkages between specific bacterial populations and process performance in anaerobic digestion, the dynamics of bacterial community structure was monitored with high-throughput sequencing in triplicate anaerobic digesters treating animal waste. Firmicutes and Bacteroidetes were found as the two most abundant populations, however, with contrasting population dynamics in response to organic overloading. Firmicutes dominated the bacterial community during stable process performance at low organic loading rate, representing over 50 % of the bacterial abundance. In contrast, the onset of organic overloading raised the relative abundance of Bacteroidetes from 20 ± 2.6 to 44 ± 3.1 %. In addition to the significant negative correlation between the relative abundance of Firmicutes and Bacteroidetes, populations of Firmicutes and Bacteroidetes were found to be linked to process parameters including organic loading rate, volatile fatty acids concentration, and methane production. Therefore, the population abundance ratio of Firmicutes to Bacteroidetes (F/B ratio) was suggested as a potential indicator for process performance. The interactions between Firmicutes and Bacteroidetes populations could be exploited to develop strategies for the prevention of performance perturbation in anaerobic digestion processes.     

Variations in <Emphasis Type="Italic">Microtus arvalis</Emphasis> and <Emphasis Type="Italic">Microtus agrestis</Emphasis> (Arvicolinae,Rodentia) Dental Morphologies in an Archaeological Context: the Case of Teixoneres Cave (Late Pleistocene,North-Eastern Iberia)

Morphological and morphometric variations in the first lower molars of Microtus arvalis and Microtus agrestis from the late Pleistocene site of Teixoneres Cave (Barcelona, Spain) have been investigated in order to understand the modifications in dental patterns occurring in these two species in a peripheral region of their distribution area. It was possible to identify along the sequence differences in size and frequencies of morphotypes within the two populations, corresponding to environmental and climatic oscillations. Hypotheses to explain these intraspecific changes are discussed, and the variations are ascribed primarily to small-scale intraregional movements of these two rodent populations.     

Identification of <Emphasis Type="Italic">Bacillus</Emphasis> Probiotics Isolated from Soil Rhizosphere Using 16S rRNA, <Emphasis Type="Italic">recA</Emphasis>, <Emphasis Type="Italic">rpoB</Emphasis> Gene Sequencing and RAPD-PCR

Some Bacillus species, especially Bacillus subtilis and Bacillus pumilus groups, have highly similar 16S rRNA gene sequences, which are hard to identify based on 16S rDNA sequence analysis. To conquer this drawback, rpoB, recA sequence analysis along with randomly amplified polymorphic (RAPD) fingerprinting was examined as an alternative method for differentiating Bacillus species. The 16S rRNA, rpoB and recA genes were amplified via a polymerase chain reaction using their specific primers. The resulted PCR amplicons were sequenced, and phylogenetic analysis was employed by MEGA 6 software. Identification based on 16S rRNA gene sequencing was underpinned by rpoB and recA gene sequencing as well as RAPD-PCR technique. Subsequently, concatenation and phylogenetic analysis showed that extent of diversity and similarity were better obtained by rpoB and recA primers, which are also reinforced by RAPD-PCR methods. However, in one case, these approaches failed to identify one isolate, which in combination with the phenotypical method offsets this issue. Overall, RAPD fingerprinting, rpoB and recA along with concatenated genes sequence analysis discriminated closely related Bacillus species, which highlights the significance of the multigenic method in more precisely distinguishing Bacillus strains. This research emphasizes the benefit of RAPD fingerprinting, rpoB and recA sequence analysis superior to 16S rRNA gene sequence analysis for suitable and effective identification of Bacillus species as recommended for probiotic products.     

Phylogenetic characterization and novelty of organic sulphur metabolizing genes of <Emphasis Type="Italic">Rhodococcus</Emphasis> spp. (Eu-32)

Rhodococcus spp. (Eu-32) has the unique ability to metabolize organic sulphur containing compounds like dibenzothiophene through an extended sulphur specific pathway (Akhtar et al., in FEMS Microbiol Lett 301:95–102, 2009). Efforts were made to isolate and characterize the presumed desulphurizing genes (dszABC) involved in the sulphur specific pathway of isolate Eu-32 by employing standard and degenerate polymerase chain reaction primers. The partial dszA gene sequence of isolate Eu-32 showed 92 % sequence identity with a putative FMNH-2 dependent monooxygenase of Rhodococcus erythropolis PR4. The dszC gene sequence showed 99 % homology with the dibenzothiophene monooxygenase desulphurizing enzyme of another Rhodococcus species. The dszB gene was not unambiguously identified. A phylogenetic analysis by maximum likelihood method of the 16S rRNA gene and deduced DszA and C amino acid sequences suggest that horizontal gene transfer events might have taken place during the evolution of desulphurizing genes of Rhodococcus spp. (Eu-32).     

Entomopathogenic nematode distribution and edaphoclimatic conditions in the Cerrado of Minas Gerais,Brazil

Based on the high diversity of Brazilian fauna and flora, edaphoclimatic conditions in the Cerrado of Minas Gerais, and the situation of utilization of EPNs in Brazil, a survey was conducted in order to relate the presence of these organisms with the physical and chemical attributes of the soil, combined with precipitation. To this end, soil samples were collected in areas with diversified vegetation types in Monte Carmelo, MG, at Juliana Farm. The samples were obtained every 15 days for 6 months. From each spot, soil samples (about 500 g) were collected for soil moisture characterization, nematode isolation and determination of pH, organic matter, potassium (K), calcium (Ca), magnesium (Mg), phosphorus (P), potential acidity (H + Al) and precipitation data (mm). Three populations of entomopathogenic nematodes of the Heterorhabditis amazonensis species were isolated in Cerrado stricto sensu and Gallery forest areas. The occurrence H. amazonensis could not be considered restricted to specific soil condition, as organic matter, humidity, pH, Ca, K, Mg and H + Al, especially considering the organic matter and K values, which had variable levels between the places of collection. The p values of the positive soil samples were at a lower level than the mean of the Gallery forest and Cerrado, and at the same level as maize and pasture area. The soil moisture in the Cerrado area increased with the higher values of precipitation; however, in the Gallery forest area this association was not observed. Also, the nematodes were isolated when the temperature began to decrease.     

Utilizing a historical database to refine ground cover vegetation as indicators of wetland hydrology

Indicator species provide an easy and quick method of evaluating ecosystems. The species comprising the most useful indicators of wetlands should be distributed across a range of water depths and inundation durations, while each species is representative of a specific condition. Hydrophytic vegetation is commonly used to determine the existence and type of wetland; however, such indicator systems often depend on assigning species qualitatively to discrete categories based on assumptions about their distribution along a gradient of conditions. The current study proposes a wetland indicator system based on the quantitative responses of individual vegetation species to a gradient of water depths and periods of inundation. A long-term database was utilized to determine species responses to hydrological alterations in a series of wetlands. The hydrophytic plant species investigated (n = 29) displayed relatively narrow ranges of mean hydrologic values and were distributed linearly along multiple hydrologic gradients (hydroperiod, average water depth, and maximum water depth) ranging from Amphicarpum muhlenbergianum which was observed at the shallowest water depths and shortest hydroperiod to Pontederia cordata and Ludwigia repens which were characteristic of wetlands with the deepest water and longest hydroperiod. The species distribution and means along the hydrologic gradients tested indicates they are prime candidates for inclusion in a quantitative or continuum indicator system. The historical database utilized for this study provided valuable information for numerous species common to the Tampa Bay region for which little or no ecological information was previously available. The methodology utilized in this paper provides a cost and time effective method for obtaining the vast amounts of information required to refine plant indicator systems using a large number of species.     

The development of the genus <Emphasis Type="Italic">Biarmeaspira</Emphasis> (Gastropoda) in the Kazanian Paleobasin (Middle Permian,Volga-Urals Region)

This paper discusses the morphogenesis and evolutionary history of the genus Biarmeaspira in the Kazanian Paleobasin. Based on an analysis of variability, morphotypes are recognized for B. striata and B. jusupovi, and patterns in the changes of characters are established. The stratigraphic distribution and facies affinity of the species and morphotypes of Biarmeaspira in the Kazanian of the Volga-Urals Region are reviewed.     

Flow cytometric and light microscopic identification of hemocyte subpopulations in <Emphasis Type="Italic">Modiolus kurilensis</Emphasis> (Bernard, 1983) (Bivalvia: Mytilidae)

Flow cytometry using forward and side light scattering identified three cell subpopulations in the hemolymph of Modiolus kurilensis (Mytilidae). Light microscopic data indicated that they correspond to three hemocyte morphotypes: R1, hemoblasts and agranulocytes (hyalinocytes); R2, semigranulocytes; and R3, granulocytes. The hemoblasts, agranulocytes, and semigranulocytes had a basophilic endoplasm, while the granulocytes were mainly eosinophilic. The proportion of the different cell morphotypes and the level of subpopulation distinction substantially varied among individuals. This seems to be connected with the different functional activities of the hemocytes, depending on the immunological status of the bivalves.