Factors affecting viable cell counts of freeze-driedCryptococcus terricolus cells

Freeze-drying ofCryptococcus terricolus cells in distilled water resulted in a survival of only 0.1% of the cells. The viability could be increased to 16% by the use of a dextran-sucrose-sodium glutamate solution as suspending medium.For freeze-dried material with both low and high survival rates, and for five as well as for ten days old cultures, malt extract solution was the superior reconstitution medium. Less, but still distinct, protective action was found with a synthetic glucose-urea-salt solution.The viable cell counts of cells freeze-dried in dextran-sucrose-sodium glutamate solution were independent of the medium used for plating. When distilled water was used as a medium for freeze-drying, two to four times higher counts were obtained with malt extract agar than with synthetic glucose-urea-salt agar.Of the twenty different media tried for freeze-drying, sucrose solution gave the best protection. The viability was greatly influenced by the concentration used, maximum values being obtained when more than 10% of sucrose was added. The survival rate increased with the age of the cells until the fifth day, but was independent of the concentration of cells in the suspension. Under optimum conditions a survival rate of more than 80% was reached.     

Growth and multiplication ofRhodotorula glutinis as determined by viable and total cell counts

Excellent correlation has been shown between two total and two culture, or viable, count techniques used for cell enumeration studies ofRhodotorula glutinis. The culture methods examined, the drop plate and the spread plate proved equally reliable for enumeration except for slight variations during the period of maximal budding of the organism. The Coulter Counter was a valuable tool as it permitted rapid cell population analysis with minimal preparatory procedures. The Petroff-Hausser counting chamber was found applicable only when cell numbers approached 10⁹ or greater.Contribution No. 468 from the Marine Laboratory, Institute of Marine Science, University of Miami, Miami, Florida, U.S.A. Supported by Grant G-16146 from the National Science Foundation.     

Effect of the pre-treatments for milk samples filtration on direct viable cell counts

Escherichia coli O25: H–42 was selected to study the effect of pre-treatments on the enumeration of direct viable cells from milk samples. Before and after inducing cell elongation by cellular division inhibitors, three pre-treatments for milk-filtration were used. One involved a pretreatment with trypsin (1·5 min at 50°C), addition of hot Triton X-100 after heating and filter rinses with phosphate saline buffer. The other two involved pretreatment with trypsin and Triton X-100 (10 min at 50°C), filter rinses with hot Triton X-100 and organic solvents. Pre-treatments applied after inducing cell elongation had an effect on cell recovery from milk samples depending on the pre-treatment used. The most suitable, on the basis of the number and percentage of enlarged cells obtained was the first described. The others selectively affected recovery of elongated cells. Pretreatments applied before inducing the cell elongation, negatively affected viability with enumerations in milk samples being significantly ( P < 0·001) lower than those found in controls. However, the negative effects of first pre-treatment on viability was lower than that produced by the pre-treatments involving organic solvents.     

Release of microorganisms from soil with respect to transmission electron microscopy viewing and plate counts

Microorganisms were detached and washed from soil by various procedures involving blending and sonication of the soil in water or pyrophosphate solution, followed by successive low-speed, centrifugal-washing separations of the suspended cells from the soil debris. Some of these procedures were previously used for separating and concentrating cells from soil for transmission electron microscopy viewing. Exhaustive applications of these procedures separated up to 27% of the platable cells from the soil. Based on filterability, these cells either were no longer attached to soil particles, or were attached to very small particles. The cells fractionating with the soil debris, however, seemed to be strongly attached to it or to other cells so that they were not filterable. Laboratory-grown cultures added to sterile and non-sterile soil did not attach to the soil materials and were easily recovered from the soil even though low-speed centrifugations were being used. Electron microscopy evidence for cells released and concentrated from non-inoculated natural soil, and for cells remaining with the soil debris, suggests that the very small, probably non-platable, cells tend to release more easily than do cells in the size range of 0.3 to 0.5 μm in diameter, and that cells larger than this, including bacterial and fungal spores, are more difficult to separate from soil. Plating data for heated preparations are in agreement with this for bacterial spores. The results are considered in relation to the validity of plate counts and direct soil transmission electron microscopy for evaluating the microbial flora of soil. This research was authorized for publication as paper no. 5131 in the journal series of the Pennsylvania Agricultural Experiment Station on 7/20/76.     

A fluorescence assay to determine the viable biomass of microcosm dental plaque biofilms

Dental plaque bacteria form complex and robust cell aggregates which cannot be counted accurately using epifluorescence microscopy. This causes a significant problem for quantifying their viability. The aim of the investigation was to develop a fluorescence assay to quantify the viable biomass of dental plaque biofilms. Using an artificial mouth system, microcosm plaques were grown under a range of fluoride and mineralizing conditions, and were treated with the oral antiseptics chlorhexidine (CHX) and Listerine. Plaques were harvested, made into suspension and stained in microtitre plates with a di-chromatic fluorescent stain (Live/Dead BacLight). The percentage of viable biomass was calculated from the regression data generated from a viability standard. The standard was constructed using different proportions of viable (green fluorescence) and non-viable (red fluorescence) plaque bacteria, and growth conditions for optimizing green fluorescence were investigated. The results from the assay showed that fluoride at 1000 and 3000 ppm promoted plaque viability by at least 15%, from approximately 45 to 60%, and at 5000 ppm to approximately 87% (P<0.05). Plaques treated with Listerine and CHX from d 0 yielded insufficient biomass to be tested for viability, however 14 d post-treatment, viability was comparable to untreated plaques (approximately 55%, P>0.05). Treatment with Listerine and CHX from d 3 reduced biomass but not viability. Development of this assay enabled viability of plaque bacteria which cannot be resolved with epifluorescence microscopy to be evaluated. It offers a rapid alternative to epifluorescence microscopy and could be applied to nonoral bacteria.     

Initial development and structure of biofilms on microbial fuel cell anodes

Background  

Microbial fuel cells (MFCs) rely on electrochemically active bacteria to capture the chemical energy contained in organics and convert it to electrical energy. Bacteria develop biofilms on the MFC electrodes, allowing considerable conversion capacity and opportunities for extracellular electron transfer (EET). The present knowledge on EET is centred around two Gram-negative models, i.e. Shewanella and Geobacter species, as it is believed that Gram-positives cannot perform EET by themselves as the Gram-negatives can. To understand how bacteria form biofilms within MFCs and how their development, structure and viability affects electron transfer, we performed pure and co-culture experiments.     

Correlation of viable cell counts,metabolic activity of sulphur-oxidizing bacteria and chemical parameters of marine sediments

Viable counts of aerobic and anaerobic chemotrophic sulphur-oxidizers as well as phototrophic sulphur bacteria were determined in sediment samples taken from two different areas along the Baltic Sea shore which were known to regularly develop sulphidic conditions. Depth profiles of bacterial cell counts were correlated with concentration profiles of chloride, sulphate, sulphide, nitrate and phosphate in the pore water of these sediments and with potential activities of nitrate reduction, thiosulphate transformation and sulphate formation. The data revealed a complex multilayered structure within the sediments. Sulphide was released into the water from sediments of both sampling areas, but it was found that light and the availability of oxygen significantly reduced this amount. In the highly reduced sediment at Hiddensee, the highest numbers of phototrophic and chemotrophic sulphur-oxidizers were found near the sediment surface. Therefore, it was concluded that the combined action of both groups of bacteria most efficiently oxidizes reduced sulphur compounds in the top layers of the sediments. Nitrate may replace oxygen as final electron acceptor and will support oxidation of sulphide, in particular when oxygen and light are limiting.     

Nutritional quality of biofilms with respect to light regime in Lake Saint-Pierre (Québec, Canada)

1. In situ experiments were conducted using specialised incubation devices to grow biofilms under varying light regimes and grazing intensities (by excluding fish and large‐sized zooplankton, >2 mm) both within and between two sites in Lake Saint‐Pierre. 2. Biofilms growing under greater in situ UVR and light exposures found in the south water mass were characterised by a greater biomass and nutrient content, but their total fatty acid (FA) contents and ratios of elemental nutrients were not significantly different from the north. There was a relatively greater abundance of chlorophytes and cyanobacteria in the south water mass, along with a greater proportion of low nutritional quality saturated fatty acids (SAFA). Conversely, biofilms growing in the north had a greater relative abundance of diatoms, as well as greater eicosapentaneoic acid (20:5ω3) and docosahexaneoic acid (22:6ω3) concentrations (two FAs implicated in the physiological competency of grazers). 3. The prevailing community structures created differences in terms of nutritional status of the biofilms for benthic grazers and their predators at the two sites. The biofilms from the southern site were characterised by greater food quantity at the expense of quality, while biofilms from the northern site contained less food of a better quality. Despite this, the nutritional regime in the south supported a greater productivity at higher trophic levels. The secondary treatments (light and grazing by fish and macro‐invertebrates) had lesser effects on food quality.     

A simple and reproducible 96-well plate-based method for the formation of fungal biofilms and its application to antifungal susceptibility testing

The incidence of fungal infections has increased significantly over the past decades. Very often these infections are associated with biofilm formation on implanted biomaterials and/or host surfaces. This has important clinical implications, as fungal biofilms display properties that are dramatically different from planktonic (free-living) populations, including increased resistance to antifungal agents. Here we describe a rapid and highly reproducible 96-well microtiter-based method for the formation of fungal biofilms, which is easily adaptable for antifungal susceptibility testing. This model is based on the ability of metabolically active sessile cells to reduce a tetrazolium salt (2,3-bis(2-methoxy-4-nitro-5-sulfo-phenyl)-2H-tetrazolium-5-carboxanilide) to water-soluble orange formazan compounds, the intensity of which can then be determined using a microtiter-plate reader. The entire procedure takes approximately 2 d to complete. This technique simplifies biofilm formation and quantification, making it more reliable and comparable among different laboratories, a necessary step toward the standardization of antifungal susceptibility testing of biofilms.     

Influence of hydrodynamics and cell signaling on the structure and behavior of Pseudomonas aeruginosa biofilms

Biofilms were grown from wild-type (WT) Pseudomonas aeruginosa PAO1 and the cell signaling lasI mutant PAO1-JP1 under laminar and turbulent flows to investigate the relative contributions of hydrodynamics and cell signaling for biofilm formation. Various biofilm morphological parameters were quantified using Image Structure Analyzer software. Multivariate analysis demonstrated that both cell signaling and hydrodynamics significantly (P < 0.000) influenced biofilm structure. In turbulent flow, both biofilms formed streamlined patches, which in some cases developed ripple-like wave structures which flowed downstream along the surface of the flow cell. In laminar flow, both biofilms formed monolayers interspersed with small circular microcolonies. Ripple-like structures also formed in four out of six WT biofilms, although their velocity was approximately 10 times less than that of those that formed in the turbulent flow cells. The movement of biofilm cell clusters over solid surfaces may have important clinical implications for the dissemination of biofilm subject to fluid shear, such as that found in catheters. The ability of the cell signaling mutant to form biofilms in high shear flow demonstrates that signaling mechanisms are not required for the formation of strongly adhered biofilms. Similarity between biofilm morphologies in WT and mutant biofilms suggests that the dilution of signal molecules by mass transfer effects in faster flowing systems mollifies the dramatic influence of signal molecules on biofilm structure reported in previous studies.     

The cell cycle of the planctomycete Gemmata obscuriglobus with respect to cell compartmentalization

Background  

Gemmata obscuriglobus is a distinctive member of the divergent phylum Planctomycetes, all known members of which are peptidoglycan-less bacteria with a shared compartmentalized cell structure and divide by a budding process. G. obscuriglobus in addition shares the unique feature that its nucleoid DNA is surrounded by an envelope consisting of two membranes forming an analogous structure to the membrane-bounded nucleoid of eukaryotes and therefore G. obscuriglobus forms a special model for cell biology. Draft genome data for G. obscuriglobus as well as complete genome sequences available so far for other planctomycetes indicate that the key bacterial cell division protein FtsZ is not present in these planctomycetes, so the cell division process in planctomycetes is of special comparative interest. The membrane-bounded nature of the nucleoid in G. obscuriglobus also suggests that special mechanisms for the distribution of this nuclear body to the bud and for distribution of chromosomal DNA might exist during division. It was therefore of interest to examine the cell division cycle in G. obscuriglobus and the process of nucleoid distribution and nuclear body formation during division in this planctomycete bacterium via light and electron microscopy.     

Basic aspects of photon transport through matter with respect to track structure formation

After a short summary of the most important physical aspects of photon interaction with matter and of the main elements of photon transport simulation, some basic features of photon tracks in liquid water are discussed. These include the statistical distribution of the number of photon interactions caused during the complete photon slow-down, the corresponding mean value, the distance distribution of photon interactions, and the spectral distribution of secondary electrons or, which is the same, the spectral distribution of the start energy of secondary electron tracks. The latter distribution can easily be interpreted in terms of the track entity concept of Mozumder and Magee, which, therefore, proves to be the most natural concept of track structure analysis in the case of photon irradiation. Received: 20 September 1998 / Accepted in revised form: 30 April 1999     

Formation of viable cell fragments by treatment with colchicine

Time-lapse cinematography of human fibroblasts revealed that mitotic cells separated into numerous cell fragments containing varying amounts of chromatin and cytoplasm when treated with colchicine. As cell fragments were very loosely attached to the surface of the culture vessel during their formation, they could be easily detached like mitotic cells by gently shaking the vessel and thus separated from normal interphase cells. Fragments obtained by this procedure were able to exclude trypan blue indicating, therefore, an intact cell membrane. When placed into Petri dishes many of them attached to and even spread out on the surface. Five hours later the majority of the attached fragments incorporated [³H]leucine. Time-lapse films showed that fragments were able to extend and retract pseudopodia at least for several hours after their formation. Although the fragments degenerated within a few days, in the present experiments the possibility was not excluded that fragments which had lost only a very small amount of chromatin and cytoplasm survived for longer periods of time. The observations clearly indicate viability of many newly formed fragments.     

A comparison of viable counts and adenine nucleotide analysis to determine the effect of antimicrobial agents on dental plaque

The effects of three antimicrobial agents on smooth surface dental plaque in monkeys were assessed using a plaque index, bacterial viable count, and adenine nucleotide analysis. The effects of the agents were revealed equally well when, viability was assayed by extractable adenosine triphosphate (ATP) or conventional viable cell counts. A persistent effect of one of the agents was revealed by both viable count and extractable ATP. These interpretations were supported by calculations of adenylate energy charge from the adenine nucleotide content of the smooth surface dental plaque samples.