Phylogenetic placement and anatomical characterisation of two new West African Tomentella (Basidiomycota, Fungi) species

Tomentella amyloapiculata and T. agbassaensis are described as new species within the genus Tomentella based on materials we collected in the West African, northern Guinean seasonal forests. We used a combination of anatomical characters, sequence analyses and phylogenetic inference of 71 ITS rDNA sequences to characterise the two new species. Anatomically, T. amyloapiculata is characterised by simple septate brown to dark brown, thick-walled subicular and subhymenial hyphae and triangular to slightly lobed brown basidiospores (in frontal view), with isolate aculei of 1–2 μm. Phylogenetically, T. amyloapiculata forms a sister species of T. fuscocinerea with a moderate bootstrap support of 70%. T. amyloapiculata deviates from T. fuscocinerea by 10.07–11.73% in their sequence similarities. As far as T. agbassaensis is concerned, it clusters phylogenetically together with T. bryophila with a strong bootstrap support of 99%. The species is characterised by slightly differentiated rhizomorphs with yellowish hyphae, clamped, thick-walled and yellow to dark yellow subicular hyphae and pale yellow, small basidiospores of 6–8(8.5) μm with aculei of up to 0.5 μm. Both new species deviated from each other by 11.0–11.60% with regard to the ITS rDNA nucleotides.     

A Molecular Phylogeny of Lilium in the Internal Transcribed Spacer Region of Nuclear Ribosomal DNA

Phylogenetic relationships among 55 species of Lilium, Cardiocrinum giganteum, and Nomocharis saluenensis were inferred from nucleotide sequence variations in the internal transcribed spacer (ITS) regions of 18S–25S nuclear ribosomal DNA. The phylogeny derived from ITS sequences estimated using maximum-likelihood methods indicated that (1) most of the species construct their own clade according to the classification based on morphological features at the section level; (2) section Daurolirion is not independent of Sinomartagon, and it is appropriate to integrate two sections as Sinomartagon; (3) it is appropriate that L. henryi and L. bulbiferum are classified into subsection 6a and Sinomartagon–Daurolirion, respectively; (4) subsection 6b is much closer to Sinomartagon than subsection 6a and Archelirion, and it arose directly from Sinomartagon; and (5) Lilium is much closer to Nomocharis than Cardiocrinum. Phylogenetic estimation using sequences of the ITS region is suitable at the levels of genus, section, and most of subsection. Received: 18 December 1998 / Accepted: 14 March 1999     

<Emphasis Type="Italic">Hirsutella proturicola</Emphasis> sp. nov. isolated from a proturan, <Emphasis Type="Italic">Baculentulus</Emphasis> densus (Protura,Hexapoda)

A new species of Hirsutella, H. proturicola, isolated from a subterranean proturan (Baculentulus densus; Protura, Hexapoda), is described and illustrated. Hirsutella proturicola is characterized by producing monoblastic phialides of 24–51.5 × 2.5–5 μm with a slightly roughened neck, fusiform and curved conidia of 9–18 × 2.5–4 μm that have a truncate base and a papillate projection often capped with sheath-like mucilage, and pluricellular, globose to subglobose chlamydospores of 21–48 × 21–41.5 μm. This species is morphologically and phylogenetically close to H. rostrata, an acaropathogenic species, but can be distinguished from the size of the phialides and the size and shape of the conidia.     

<Emphasis Type="Italic">Echinorhynchus</Emphasis><Emphasis Type="Italic">hexagrammi</Emphasis> Baeva, 1965 (Acanthocephala: Echinorhynchidae) from marine fishes off Hokkaido,Japan, with morphological observations and new host records

Echinorhynchus hexagrammi Baeva, 1965 is redescribed on the basis of specimens collected from the saffron cod Eleginus gracilis (Tilesius) in Akkeshi Bay (western North Pacific) off Hokkaido, Japan. Eighteen museum specimens deposited as E. salmonis Müller, 1784 from Japanese coastal waters were also re-examined and re-identified as E. hexagrammi. Hexagrammos stelleri Tilesius, Hemitripterus villosus (Pallas), Podothecus sachi (Jordan & Snyder), Sebastes oblongus Günther and Verasper moseri Jordan & Gilbert are recognised as new hosts for E. hexagrammi. This acanthocephalan can be distinguished from three morphologically similar species, E. gadi Zoega in Müller, 1776, E. laurentianus Ronald, 1957 and E. salmonis, by the possession of the following characters: 12–16 (usually 14) rows of hook on the proboscis, a proboscis width of 170–240 μm in males and 195–270 μm in females, a hook root length of 35–45 μm in males and 40–50 μm in females, and linearly or almost linearly arranged cement glands in males.     

Morphological separation of aphid species <Emphasis Type="Italic">Cryptomyzus leonuri</Emphasis> Bozhko, 1961 and <Emphasis Type="Italic">Cryptomyzus alboapicalis</Emphasis> (Theobald, 1916) (Hemiptera: Sternorrhyncha: Aphididae)

Aphids of the species Cryptomyzus alboapicalis (Theobald, 1916) and Cryptomyzus leonuri Bozhko, 1961 are very similar morphologically, although exploit different host plants (Lamium album and Leonurus cardiaca, respectively). Morphological characters proposed for the separation of this species couple in the identification key to European Cryptomyzus species appeared to be of little discriminatory power when applied to apterous viviparous females from clonal lineages, whilst alate viviparous females of C. leonuri were not included in the key at all. The aim of this study was to find reliable morphological characters and their combinations for the separation of apterous and alate viviparous females of C. alboapicalis and C. leonuri. Forward stepwise discriminant analysis based on characters without statistically significant (P < 0.05) correlation (|r| ≥ 0.50) with body length resulted in canonical functions enabling correct classification of 95–100% of specimens from clonal lineages involved in the analysis with a priori specified group membership. The post hoc classification gave 95–100% correct identification of individuals from clonal and 85–100% from field-collected samples. The discriminative values of single morphological characters and canonical functions are discussed and modified key for the morphological identification of C. alboapicalis and C. leonuri apterous and alate viviparous females is suggested.     

Reclassification of Two <Emphasis Type="Italic">Peronospora</Emphasis> Species Parasitic on <Emphasis Type="Italic">Draba</Emphasis> in <Emphasis Type="Italic">Hyaloperonospora</Emphasis> Based on Morphological and Molecular Phylogenetic Data

On the family Brassicaceae, the causal agent responsible for downy mildew disease was originally regarded as a single species, Peronospora parasitica (now under Hyaloperonospora), but it was recently reconsidered to consist of many distinct species. In this study, 11 specimens of Peronospora drabae and P. norvegica parasitic on the genus Draba were investigated morphologically and molecularly. Pronounced differences in conidial sizes (P. drabae: 14–20 × 12.5–15.5 μm; P. norvegica: 20–29 × 15.5–22 μm) and 7.8% sequence distance between their ITS1-5.8S-ITS2 rDNA sequences confirmed their status as distinct species. Based on ITS phylogeny and morphology (monopodially branching conidiophores, flexuous to sigmoid ultimate branchlets, hyaline conidia and lobate haustoria), the two species unequivocally belong to the genus Hyaloperonospora and not to Peronospora to which they were previously assigned. Therefore, two new combinations, Hyaloperonospora drabae and H. norvegica, are proposed. The two taxa are illustrated and compared using the type specimen for H. norvegica and authentic specimens for H. drabae, which is lectotypified.     

Channa nox, a new channid fish lacking a pelvic fin from Guangxi, China

 A new species of channid fish, genus Channa, is described from 7 specimens collected from the vicinity of Hepu, Guangxi Province, southern China. The new species, Channa nox, is distinguished from all other channid species by the following combination of characters: absence of pelvic fins, small rounded head (22.1%–26.8% SL), narrow interorbital width (19.6%–26.7% HL), short snout length (3.6%–5.1% SL), predorsal and prepectoral lengths (26.9%–28.4% SL and 24.8%–28.3% SL, respectively), 47–51 dorsal fin rays, 31–33 anal fin rays, 55–63 lateral line scales, 5.5–6.5 scales above lateral line, 9–13 cheek scales, 53–55 total vertebrae, 1 or 2 scale(s) on each side of lower jaw undersurface, the black upper half of body with 8–11 irregular (often anteriorly pointed V-shaped) bands or blotches, a large white-rimmed black ocellus on caudal peduncle and sparse white spots on the dark brown body and dorsal and caudal fins, as well as the shape of the hyomandibular process of the suprabranchial organs. Channa nox is sympatrically distributed with its morphologically most similar congener, C. asiatica. Received: January 18, 2001 / Revised: November 2, 2001 / Accepted: December 12, 2001     

Cladonia subturgida and C. iberica (Cladoniaceae) form a single, morphologically and chemically polymorphic species

Cladonia subturgida and C. iberica constitute the whole of a Mediterranean problematic species, which shows great morphological polymorphism. A study was carried out in order to delimit the extant taxa within this group. The variability of the group was studied morphologically, chemically and phylogenetically. The phylogeny was based on three loci (ITS rDNA, rpb2 and mtLSU), using Maximum Parsimony and Bayesian analyses. Six chemotypes were identified, the most common one containing atranorin and protolichesterinic acid. Our results prove that C. subturgida and C. iberica constitute a single, morphologically and chemically polymorphic species. The taxonomic rank of C. turgida var. corsicana was also studied based on analyses of morphological, chemical and ITS rDNA data. The new nomenclatural combination, C. corsicana, is proposed.     

Molecular authentication of ginseng cultivars by comparison of internal transcribed spacer and 5.8S rDNA sequences

Molecular authentication among three Panax species and within cultivars and accessions of P. ginseng was investigated using the DNA sequence in the ribosomal ITS1–5.8S–ITS2 region. Four single-nucleotide polymorphisms were identified between P. ginseng and other Panax species. In the electrophoresis profile, obtained after digestion with the enzyme TaqI, three fingerprinting patterns were obtained from cultivars and accessions of Panax species. Consequently, this authentication procedure based upon the restriction fragment length polymorphism in the ribosomal ITS1–5.8S–ITS2 region can now be utilized to differentiate these Panax species as well as major Korean cultivars such as Gopoong and Kumpoong from other cultivars and accessions in Panax species at the DNA level. O. T. Kim and K. H. Bang contributed equally to this paper.     

Global diversity of inland water cnidarians

Global diversity of inland water cnidarians is low, containing <40 species belonging to phylogenetically distinct groups representing independent invasion events: the common and cosmopolitan hydras (12–15 species); the sporadically occurring freshwater medusae (6–16 sp.); the Cordylophorinae (2 sp.); the parasitic Polypodium (1 sp.); the medusae occurring in saline lakes (4 sp.). Freshwater cnidarians inhabit nearly all types of freshwater on all continents (except Antarctica), but only a few species have cosmopolitan distributions. Due to uncertainty in species knowledge, fine scale regions of endemicity are not yet clear. Guest editors: E. V. Balian, C. Lévêque, H. Segers & K. Martens Freshwater Animal Diversity Assessment     

Centaurea amanosensis (Asteraceae), a new species from Turkey

Centaurea amanosensis M. Bona, a new species of Asteraceae from Hatay province of Turkey is described and illustrated. It is morphologically similar to C. cheirolopha (Fenzl) Wagenitz, C. lycopifolia Boiss. & Kotschy ex Boiss. & Kotschy, and C. stevenii Bieb. (Section Pseudoseridia), but it differs mainly in life form, general habit, leaves and achene characters. The IUCN conservation status of Critically Endangered (CR) should be applied to C. amanosensis.     

Genetic differentiation of Colletotrichum gloeosporioides and C. truncatum associated with Anthracnose disease of papaya (Carica papaya L.) and bell pepper (Capsium annuum L.) based on ITS PCR-RFLP fingerprinting

Members of the genus Colletotrichum include some of the most economically important fungal pathogens in the world. Accurate diagnosis is critical to devising disease management strategies. Two species, Colletotrichum gloeosporioides and C. truncatum, are responsible for anthracnose disease in papaya (Carica papaya L.) and bell pepper (Capsicum annuum L.) in Trinidad. The ITS1–5.8S–ITS2 region of 48 Colletotrichum isolates was sequenced, and the ITS PCR products were analyzed by PCR-RFLP analysis. Restriction site polymorphisms generated from 11 restriction enzymes enabled the identification of specific enzymes that were successful in distinguishing between C. gloeosporioides and C. truncatum isolates. Species-specific restriction fragment length polymorphisms generated by the enzymes AluI, HaeIII, PvuII, RsaI, and Sau3A were used to consistently resolve C. gloeosporioides and C. truncatum isolates from papaya. AluI, ApaI, PvuII, RsaI, and SmaI reliably separated isolates of C. gloeosporioides and C. truncatum from bell pepper. PvuII, RsaI, and Sau3A were also capable of distinguishing among the C. gloeosporioides isolates from papaya based on the different restriction patterns that were obtained as a result of intra-specific variation in restriction enzyme recognition sites in the ITS1–5.8S–ITS2 rDNA region. Of all the isolates tested, C. gloeosporioides from papaya also had the highest number of PCR-RFLP haplotypes. Cluster analysis of sequence and PCR-RFLP data demonstrated that all C. gloeosporioides and C. truncatum isolates clustered separately into species-specific clades regardless of host species. Phylograms also revealed consistent topologies which suggested that the genetic distances for PCR-RFLP-generated data were comparable to that of ITS sequence data. ITS PCR-RFLP fingerprinting is a rapid and reliable method to identify and differentiate between Colletotrichum species.     

Asterostroma species (Basidiomycota) from mangrove forests in Japan

A new homobasidiomycete, Asterostroma macrosporum, was found in mangrove forests of Iriomote Island, Japan. This species is morphologically characterized by having resupinate basidiomata, a monomitic (asterodimitic) hyphal system, simple septate generative hyphae, dextrinoid asterosetae, four sterigmate basidia and globose, tuberculate and amyloid basidiospores measuring 8.5–11 × 7.5–9 μm. It is similar to A. muscicola, but basidiospores in the latter are smaller (7–8 × 5.5–7 μm). Furthermore, phylogenetic analysis using internal transcribed spacer (ITS) region revealed that A. macrosporum is distinctly separated from A. muscicola. In Japan, A. muscicola is widely distributed in warm-temperate to subtropical regions, growing on a variety of broadleaved trees including mangroves, while A. macrosporum has been found only on mangroves.     

Phylogeny and species delineation in the marine diatom Pseudo‐nitzschia (Bacillariophyta) using cox1, LSU,and ITS2 rRNA genes: A perspective in character evolution

Analyses of the mitochondrial cox1, the nuclear‐encoded large subunit (LSU), and the internal transcribed spacer 2 (ITS2) RNA coding region of Pseudo‐nitzschia revealed that the P. pseudodelicatissima complex can be phylogenetically grouped into three distinct clades (Groups I–III), while the P. delicatissima complex forms another distinct clade (Group IV) in both the LSU and ITS2 phylogenetic trees. It was elucidated that comprehensive taxon sampling (sampling of sequences), selection of appropriate target genes and outgroup, and alignment strategies influenced the phylogenetic accuracy. Based on the genetic divergence, ITS2 resulted in the most resolved trees, followed by cox1 and LSU. The morphological characters available for Pseudo‐nitzschia, although limited in number, were overall in agreement with the phylogenies when mapped onto the ITS2 tree. Information on the presence/absence of a central nodule, number of rows of poroids in each stria, and of sectors dividing the poroids mapped onto the ITS2 tree revealed the evolution of the recently diverged species. The morphologically based species complexes showed evolutionary relevance in agreement with molecular phylogeny inferred from ITS2 sequence–structure data. The data set of the hypervariable region of ITS2 improved the phylogenetic inference compared to the cox1 and LSU data sets. The taxonomic status of P. cuspidata and P. pseudodelicatissima requires further elucidation.     

Evolutionary Diversification Indicated by Compensatory Base Changes in ITS2 Secondary Structures in a Complex Fungal Species, <Emphasis Type="Italic">Rhizoctonia solani</Emphasis>

The rRNA cistron (18S–ITS1–5.8S–ITS2–28S) is used widely for phylogenetic analyses. Recent studies show that compensatory base changes (CBC) in the secondary structure of ITS2 correlate with genetic incompatibility between organisms. Rhizoctonia solani consists of genetically incompatible strain groups (anastomosis groups, AG) distinguished by lack of anastomosis between hyphae of strains. Phylogenetic analysis of internal transcribed spacer (ITS) sequences shows a strong correlation with AG determination. In this study, ITS sequences were reannotated according to the flanking 5.8S and 28S regions which interact during ribogenesis. One or two CBCs were detected between the ITS2 secondary structure of AG-3 potato strains as compared to AG-3 tobacco strains, and between these two strains and all other AGs. When a binucleate Rhizoctonia species related to Ceratobasidiaceae was compared to the AGs of R. solani, which were multinucleate (3–21 nuclei per cell), 1–3 CBCs were detected. The CBCs in potato strains of AG-3 distinguish them from AG-3 tobacco strains and other AGs yielding further evidence that the potato strains of AG-3 originally described as R. solani are a species distinct from other AGs. The ITS1–5.8S–ITS2 sequences were analyzed by direct sequencing of PCR products from 497 strains of AG-3 isolated from potato. The same 10 and 4 positions in ITS1 and ITS2, respectively, contained variability in 425 strains (86%). Nine different unambiguous ITS sequences (haplotypes) could be detected in a single strain by sequencing cloned PCR products indicating that concerted evolution had not homogenized the rRNA cistrons in many AG-3 strains. Importantly, the sequence variability did not affect the secondary structure of ITS2 and CBCs in AG-3. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Johnius (Johnius) laevis,a new sciaenid from northern Australia and Papua New Guinea

A new sciaenid,Johnius (Johnius) laevis, is described from northern Australia and Papua New Guinea. Amongst theJohnius (Johnius) species with no mental barbel, ctenoid body scales, and more than 10 lower gill rakers, the new species is distinguished by the combination of the following characters: dorsal soft rays 29–34; scales above the lateral line 5–6, and below 8–10; eye diameter 22.4–30% HL; interorbital width 24.6–29.8% HL; and body scales with weakly developed ctenii.     

Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species

The phylogenetic relationship among Geosmithia argillacea, Talaromyces emersonii, Talaromyces byssochlamydoides and other members of the Trichocomaceae was studied using partial RPB2 (RNA polymerase II gene, encoding the second largest protein subunit), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences. The results showed that these species form a distinct clade within the Trichocomaceae and Trichocoma paradoxa is phylogenetically most closely related. Based on phenotypic and physiological characters and molecular data, we propose Rasamsonia gen. nov. to accommodate these species. This new genus is distinct from other genera of the Trichocomaceae in being thermotolerant or thermophilic and having conidiophores with distinctly rough walled stipes, olive-brown conidia and ascomata, if present, with a scanty covering. Species within the genus Rasamsonia were distinguished using a combination of phenotypic characters, extrolite patterns, ITS and partial calmodulin and β-tubulin sequences. Rasamsonia brevistipitata sp. nov. is described and five new combinations are proposed.     

<Emphasis Type="Italic">Microrasbora</Emphasis> Annandale,a new genus record in China,with description of a new species (Teleostei: Cyprinidae)

A new species of genus Microrasbora Annandale (1918), M. microphthalma, is described from the Nanwan River, a tributary of the Ruili River, Irrawaddy drainage, in southwest Yunnan province, China. This new species is the first record of the genus Microrasbora in China. Microrasbora microphthalma can be distinguished from the other species of Microrasbora by the following combination of characters: 15–16 predorsal scales, eye diameter/head length 27–38%, eye diameter/interorbital width 70–93%, predorsal length/ standard length 60–68%, the preanal length/ standard length 65–71% and the origin of dorsal fin is posterior of that of the ventral fin. Xiao-Yong Chen and Jun-Xing Yang contributed equally to this paper.