Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem

The acreage planted in corn and soybean crops is vast, and these crops contribute substantially to the world economy. The agricultural practices employed for farming these crops have major effects on ecosystem health at a worldwide scale. The microbial communities living in agricultural soils significantly contribute to nutrient uptake and cycling and can have both positive and negative impacts on the crops growing with them. In this study, we examined the impact of the crop planted and soil tillage on nutrient levels, microbial communities, and the biochemical pathways present in the soil. We found that farming practice, that is conventional tillage versus no‐till, had a much greater impact on nearly everything measured compared to the crop planted. No‐till fields tended to have higher nutrient levels and distinct microbial communities. Moreover, no‐till fields had more DNA sequences associated with key nitrogen cycle processes, suggesting that the microbial communities were more active in cycling nitrogen. Our results indicate that tilling of agricultural soil may magnify the degree of nutrient waste and runoff by altering nutrient cycles through changes to microbial communities. Currently, a minority of acreage is maintained without tillage despite clear benefits to soil nutrient levels, and a decrease in nutrient runoff—both of which have ecosystem‐level effects and both direct and indirect effects on humans and other organisms.     

A field experiment on the effectiveness of spiders and carabid beetles as biocontrol agents in soybean

1 Spiders and carabid beetles are abundant generalist predators that prey upon insect pests of soybean. A field experiment was conducted to determine the impact of spiders and carabids on soybean yield. Prior to planting, three 7 × 7 m plots were fenced in order to reduce spider and carabid immigration. Carabids that emerged within the plots were not removed, but spiders that ballooned into these predator‐reduction plots or that entered by climbing the fence were removed by pitfall trapping and searching the vegetation. Three unmanipulated, unfenced plots served as the control treatment. 2 Densities of spiders on soybean vegetation, and activity‐densities of spiders and carabids determined by pitfall trapping, were c. 75% lower in the spider‐carabid reduction treatment than in control plots. Despite clear differences between treatments in numbers and activity of these major generalist predators, the weight of soybeans harvested did not differ between control and spider‐carabid reduction plots. 3 Paralleling the absence of an effect of predator reduction on soybean yield was the absence of any significant difference between treatments in densities of whiteflies (Aleyrodidae), leafhoppers (Cicadellidae), thrips (Thysanoptera), Lepidoptera larvae and herbivorous Coleoptera. 4 Our experiment provides no evidence that spiders and carabid beetles at ambient densities affect soybean yield. Low populations of pest species or low predation pressure on soybean pests by spiders and carabids at the ambient densities of this experiment could be responsible for this result.     

Cascading effects of predator diversity and omnivory in a marine food web

Over‐harvesting, habitat loss and exotic invasions have altered predator diversity and composition in a variety of communities which is predicted to affect other trophic levels and ecosystem functioning. We tested this hypothesis by manipulating predator identity and diversity in outdoor mesocosms that contained five species of macroalgae and a macroinvertebrate herbivore assemblage dominated by amphipods and isopods. We used five common predators including four carnivores (crabs, shrimp, blennies and killifish) and one omnivore (pinfish). Three carnivorous predators each induced a strong trophic cascade by reducing herbivore abundance and increasing algal biomass and diversity. Surprisingly, increasing predator diversity reversed these effects on macroalgae and altered algal composition, largely due to the inclusion and performance of omnivorous fish in diverse predator assemblages. Changes in predator diversity can cascade to lower trophic levels; the exact effects, however, will be difficult to predict due to the many complex interactions that occur in diverse food webs.     

Exploring the role of large predators in marsh food webs: evidence for a behaviorally-mediated trophic cascade

The influence of large predators on lower trophic levels in oligotrophic, structurally complex, and frequently disturbed aquatic environments is generally thought to be limited. We looked for effects of large predators in two semi-permanent, spikerush-dominated marshes by excluding large fish (>12 mm body depth) and similarly sized herpetofauna from 1 m² cages (exclosures) for 2 weeks. The exclosures allowed for colonization by intermediate (in size and trophic position) consumers, such as small fish, shrimp, and crayfish. Exclosures were compared to control cages that allowed large fish to move freely in and out. At the end of the experiment, intermediate-consumer densities were higher in exclosures than in controls at both sites. Decapod crustaceans, especially the riverine grass shrimp (Palaemonetes paludosus), accounted for the majority of the response. Effects of large fish on shrimp were generally consistent across sites, but per capita effects were sensitive to estimates of predator density. Densities of intermediate consumers in our exclosures were similar to marsh densities, while the open controls had lower densities. This suggests that these animals avoided our experimental controls because they were risky relative to the surrounding environment, while the exclosures were neither avoided nor preferred. Although illuminating about the dynamics of open-cage experiments, this finding does not influence the main results of the study. Small primary consumers (mostly small snails, amphipods, and midges) living on floating periphyton mats and in flocculent detritus (“floc”) were less abundant in the exclosures, indicative of a trophic cascade. Periphyton mat characteristics (i.e., biomass, chlorophyll a, TP) were not clearly or consistently affected by the exclosure, but TP in the floc was lower in exclosures. The collective cascading effects of large predators were consistent at both sites despite differences in drought frequency, stem density, and productivity.     

Effects of nutrient supplementation on host‐pathogen dynamics of the amphibian chytrid fungus: a community approach

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Coupled biochar amendment and limited irrigation strategies do not affect a degraded soil food web in a maize agroecosystem,compared to the native grassland

Climate change is predicted to increase climate variability and frequency of extreme events such as drought, straining water resources in agricultural systems. Thus, limited irrigation strategies and soil amendments are being explored to conserve water in crop production. Biochar is the recalcitrant, carbon‐based coproduct of biomass pyrolysis during bioenergy production. When used as a soil amendment, biochar can increase soil water retention while enhancing soil properties and stimulating food webs. We investigated the effects of coupled biochar amendment and limited irrigation on belowground food web structure and function in an irrigated maize agroecosystem. We hypothesized that soil biota biomass and activity would decrease with limited irrigation and increase with biochar amendment and that biochar amendment would mitigate the impact of limited irrigation on the soil food web. One year after biochar addition, we extracted, identified, and estimated the biomass of taxonomic groups of soil biota (e.g., bacteria, fungi, protozoa, nematodes, and arthropods) from wood‐derived biochar‐amended (30 Mg ha^?1) and nonamended soils under maize with limited (two‐thirds of full) and full irrigation. We modeled structural and functional properties of the soil food web. Neither biochar amendment nor limited irrigation had a significant effect on biomass of the soil biota groups. Modeled soil respiration and nitrogen mineralization fluxes were not different between treatments. A comparison of the structure and function of the agroecosystem soil food web and a nearby native grassland revealed that in this temperate system, the negative impact of long‐term conventional agricultural management outweighed the impact of limited irrigation. One year of biochar amendment did not mitigate nor further contribute to the negative effects of historical agricultural management.     

Food web of macroinvertebrate community in a Yangtze shallow lake: trophic basis and pathways

No detailed food web research on macroinvertebrate community of lacustrine ecosystem was reported in China. The present study is the first attempt on the subject in Lake Biandantang, a macrophytic lake in Hubei Province. Food webs of the macroinvertebrate community were compiled bimonthly from March, 2002 to March, 2003. Dietary information was obtained from gut analysis. Linkage strength was quantified by combining estimates of energy flow (secondary production) with data of gut analysis. The macroinvertebrate community of Lake Biandantang was based heavily on detritus. Quantitative food webs showed the total ingestion ranged from 6930 to 36,340 mg dry mass m⁻² bimonthly. The ingestion of macroinvertebrate community was higher in the months with optimum temperature than that in other periods with higher or lower temperature. Through comparison, many patterns in benthic food web of Lake Biandantang are consistent with other detritus-based webs, such as stream webs, but different greatly from those based on autochthonous primary production (e.g. pelagic systems). It suggests that the trophic basis of the web is essential in shaping food web structure. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Influence of an invasive ant on grazing and detrital communities and nutrient fluxes in a tropical forest

Aim  Pathways linking grazing and detrital subsystems of terrestrial ecosystems are important for ecosystem processes and function, but remain poorly understood. The invasion of a generalist predator creates a unique opportunity to study the effects of predation across these subsystems. We examine here, the effects of a non-native generalist predator, the little red fire ant ( Wasmannia auropunctata, Roger) on both grazing and detrital invertebrate communities and ecosystem processes in a rain forest understorey.
Location  Gamba Protected Area Complex, south-western Gabon, Africa.
Methods  We measured abundances and diversities of understorey grazing and detrital invertebrate communities, soil nutrients, herbivory, litter fragmentation rates and leaf chemistry of a dominant understorey shrub inside and outside of 19 separate invasion fronts. We then explored possible trophic cascades and pathways of interaction using path analysis.
Results  Results suggest that invasive ants may alter herbivory regimes, grazing and detrital communities, and may indirectly alter litter decomposition and nutrient cycling in the soil by suppressing important microbivore and detritivore populations with consequences for leaf chemistry.
Main conclusions  These results demonstrate that generalist predators may be major drivers of both grazing and detrital subsystems by inducing strong shifts in adjacent communities that ultimately affect ecosystem processes.     

Resolving the roles of body size and species identity in driving functional diversity

Efforts to characterize food webs have generated two influential approaches that reduce the complexity of natural communities. The traditional approach groups individuals based on their species identity, while recently developed approaches group individuals based on their body size. While each approach has provided important insights, they have largely been used in parallel in different systems. Consequently, it remains unclear how body size and species identity interact, hampering our ability to develop a more holistic framework that integrates both approaches. We address this conceptual gap by developing a framework which describes how both approaches are related to each other, revealing that both approaches share common but untested assumptions about how variation across size classes or species influences differences in ecological interactions among consumers. Using freshwater mesocosms with dragonfly larvae as predators, we then experimentally demonstrate that while body size strongly determined how predators affected communities, these size effects were species specific and frequently nonlinear, violating a key assumption underlying both size- and species-based approaches. Consequently, neither purely species- nor size-based approaches were adequate to predict functional differences among predators. Instead, functional differences emerged from the synergistic effects of body size and species identity. This clearly demonstrates the need to integrate size- and species-based approaches to predict functional diversity within communities.     

不同耕作方式和秸秆还田对麦田土壤有机碳含量的影响

通过两个生长季试验,研究了不同耕作方式和秸秆还田及其交互效应对小麦全生育期0～20 cm土壤有机碳含量的影响.结果表明：小麦不同生育时期0～20 cm土层有机碳含量呈明显的动态变化;秸秆还田各处理的有机碳含量都高于无秸秆还田处理;保护性耕作措施土壤有机碳增加量显著高于传统翻耕.除传统翻耕处理外,各处理0～10 cm土层的有机碳含量都高于10～20 cm土层,秸秆还田各处理0～10 cm土层有机碳含量表现为深松(PS)＞旋耕(PR)＞免耕(PZ)＞耙耕(PH)＞传统翻耕(PC),而10～20 cm土层表现为传统翻耕(PC)＞深松(PS)＞旋耕(PR)＞耙耕(PH)＞免耕(PZ),说明保护性耕作措施能提高0～10 cm土层的有机碳含量.多因素方差分析表明：耕作因素、秸秆因素和两者交互效应在不同生育期对0～20 cm土层的有机碳含量都有显著影响.     

Impacts of soil temperature,phenology and plant community composition on invertebrate herbivory in a natural warming experiment

Species and community-level responses to warming are well documented, with plants and invertebrates known to alter their range, phenology or composition as temperature increases. The effects of warming on biotic interactions are less clearly understood, but can have consequences that cascade through ecological networks. Here, we used a natural soil temperature gradient of 5–35°C in the Hengill geothermal valley, Iceland, to investigate the effects of temperature on plant community composition and plant–invertebrate interactions. We quantified the level of invertebrate herbivory on the plant community across the temperature gradient and the interactive effects of temperature, plant phenology (i.e. development stage) and vegetation community composition on the probability of herbivory for three ubiquitous plant species, Cardamine pratensis, Cerastium fontanum and Viola palustris. We found that the percentage cover of graminoids and forbs increased, while the amount of litter decreased, with increasing soil temperature. Invertebrate herbivory also increased with soil temperature at the plant community level, but this was underpinned by different effects of temperature on herbivory for individual plant species, mediated by the seasonal development of plants and the composition of the surrounding vegetation. This illustrates the importance of considering the development stage of organisms in climate change research given the variable effects of temperature on susceptibility to herbivory at different ontogenetic stages.     

The relative importance of herbivory and carnivory on the distribution of energy in a stochastic tri-trophic food web

A three-state, discrete-time Markov chain is used to model the dynamics of energy flow in a tri-trophic food web. The distribution of energy in the three trophic levels is related to the rates of flow between the trophic levels and calculated for the entire range of possible flow values. These distributions are then analysed for stability and used to test the idea that plants are resource-limited and herbivores are predation-limited. Low rates of death and decomposition, when coupled with low rates of herbivory and carnivory, tend to destabilize this food web. Food webs with higher rates of death and decomposition are relatively more stable regardless of rates of herbivory and carnivory. Plants are more prone to resource-limitation and herbivores are, in general, limited by their predators, which supports Hairston et al. (Am. Nat. 94 (1960) 421). The rate of decomposition often mediates the roles of top-down and bottom-up control of energy flow in the food web.     

大豆田节肢动物群落优势种群时间生态位及营养关系分析

【目的】阐明大豆田节肢动物群落时间生态位及营养关系,为大豆害虫生态调控手段的实施提供坚实的理论依据。【方法】以大豆田节肢动物群落为研究对象,通过两年的田间系统调查分析。【结果】统计得到种类220余种,物种可分为天敌、害虫和中性昆虫3个类群,以天敌物种丰富度最高;害虫中以烟蓟马Thrips tabaci(0.36902)和大豆蚜Aphis glycines(0.13122)优势度最高,且有着较高的生态位重叠指数(0.8163),蚜小蜂Aphytis sp.和大草蛉Chrysopa septempunctata对害虫的时间生态位重叠指数很高,其他天敌如异色瓢虫Harmonia axyridis、龟纹瓢虫Propylaea japonica、黑带食蚜蝇Zyistrophe balteata和黑食蚜盲蝽Deraeocoris punctulatus等对害虫的重叠指数居中;大豆田中各类群构成错综复杂的食物网结构。【结论】综合考虑天敌的种群数量,确定捕食性天敌是控制害虫种群数量的有效天敌。研究可知不能单纯从时间生态位的重叠指数的高低来判断天敌的控制能力。     

What does stable isotope analysis reveal about trophic relationships and the relative importance of allochthonous and autochthonous resources in tropical streams? A synthetic study from Hong Kong

1. Analysis of the stable isotope signatures of carbon (C) and nitrogen (N) of foods and consumers has led to some preliminary understanding of the relative importance of autochthonous and allochthonous resources in tropical streams. However, robust generalizations about the dynamics of food webs in these habitats, and their response to shading gradients or season, are still lacking. In addition, the feasibility of employing a baseline δ¹⁵N value for estimating trophic positions (TPs) of consumers in small tropical streams has yet to be explored. 2. We analysed data on stable isotope signatures of food sources and aquatic consumers obtained from 14 studies carried out in small streams in monsoonal Hong Kong (22°30′N, 114°10′E) between 1996 and 2006. Emphasis was placed on determining the relative importance of leaf litter and autochthonous foods in supporting consumer biomass, and the extent to which trophic base and TP vary among streams and seasons. 3. Although allochthonous leaf litter was generally ¹³C‐ and ¹⁵N‐depleted relative to autochthonous foods, there were marked isotopic shifts of food sources and consumers in response to season (dry versus wet) and stream shading. Consumer taxa were generally more ¹³C‐ and ¹⁵N‐enriched in the unshaded streams, but seasonal effects were more variable. Despite these changes, there was consistent evidence that stream food webs were based on periphytic algae and/or cyanobacteria with leaf litter serving as a minor food. 4. Heptageniidae (Ephemeroptera), Tipulidae (Diptera), Elmidae (Coleoptera) and shrimps (Atyidae) were used as a baseline for calculating the TPs of other consumer taxa. The maximum TPs in shaded streams remained fairly constant between seasons (dry = 3.93; wet = 3.97), while those in unshaded streams were higher and showed seasonal fluctuations (dry = 5.13; wet = 4.39). 5. Although variations in consumer isotope signatures in response to season and shading gradients did not confound our interpretation of the stream food base, changes in consumer δ¹⁵N did affect the calculation of consumer TPs. Misleading estimates of consumer TPs are likely if samples are collected from a narrow range of streams and/or during one season. Overestimation of the TPs of specialist herbivores (e.g. fish grazers) is also possible when autochthonous resources are substantially more ¹⁵N‐enriched than allochthonous foods.     

Experimental study of trophic cascade effect of silver carp (Hypophthalmichthys molitrixon) in a subtropical lake, Lake Donghu: on plankton community and underlying mechanisms of changes of crustacean community

An enclosure experiment was carried out to test trophic cascade effect of filter-feeding fish on the ecosystem: growth of crustacean zooplankton, and possible mechanism of changes of crustacean community structure. Four fish biomass levels were set as follows: 0, 116, 176 and 316 g m^-2, and lake water (containing ca. 190 g m^-2 of filter-feeding fishes) was comparatively monitored. Nutrient levels were high in all treatments during the experiment. Lowest algal biomass were measured in fishless treatment. Algal biomass decreased during days 21–56 as a function of fish biomass in treatments of low (LF), medium (MF) and high (HF) fish biomass. Crustaceans biomass decreased with increasing fish biomass. Small-bodied cladocerans, Moina micrura, Diaphanosoma brachyurum and Scapholeberis kingii survived when fish biomass was high whilst, large-bodied cladocerans Daphnia spp. and the cyclopoids Theromcyclops taihokuensis, T. brevifuratus, Mescyclops notius and Cyclops vicinus were abundant only in NF enclosures. Evasive calanoid Sinodiaptomus sarsi was significantly enhanced in LF, but decreased significantly with further increase of fish biomass. Demographic data indicated that M. micrura was well developed in all treatments. Our study indicates that algal biomass might be controlled by silver carp biomass in eutrophic environment. Changes of crustacean community are probably affected by the age of the first generation of species. Species with short generation time were dominant and species with long generation time survived less with high fish biomass. Evasive calanoids hardly developed in treatments with high fish biomass because of the (bottle neck) effect of nauplii. Species abundance were positively related to fish predation avoidance. Other than direct predation, zooplankton might also be suppressed by filter-feeding fish via competition.     

根际效应对大豆田土壤线虫群落组成及多样性的影响

根际作为重要的环境界面是植物与环境之间物质能量交换的场所,关于根际效应的研究已成为土壤生态学的新兴热点领域,然而有关大豆根际效应对土壤动物多样性影响的研究报道并不多见。在三江平原选择连续耕作15a的大豆田,对大豆根际区与非根际区土壤线虫群落结构组成进行了对比分析。结果表明:大豆根际区土壤线虫总数、辛普森多样性指数(Dom)显著高于非根际区,根际区的物种数(S)、物种丰富度指数(SR)显著低于非根际区。说明大豆根际效应增加土壤线虫的丰度,但降低了线虫群落结构的复杂性。大豆根际区植物寄生线虫(PP)、食真菌线虫(FF)和食细菌线虫(BF)数量显著高于非根际区,而PP类群的比例在根际区却显著低于非根际区。这一研究结果表明食微线虫(FF和BF)类群在大豆根际区的比例增加更显著。食真菌与食细菌线虫数量比值(F/B)指示大豆根际区细菌生物量相对高于真菌生物量。研究结果丰富了农田土壤线虫多样性的研究内容,并为我国东北大豆田线虫病害的防治及定制相应的农业管理措施提供参考。     

Seasonal and ontogenetic shifts in the diet of Arctic charr Salvelinus alpinus in a subarctic lake

Seasonal and ontogenetic shifts in the diet of Arctic charr Salvelinus alpinus were studied in a deep, ultra‐oligotrophic lake in subarctic Finland from both stomach contents and the stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotope compositions of muscle and liver tissues. Both diet and isotope results indicated that the S. alpinus population relied mainly on littoral benthic energy sources. The strong littoral reliance appeared largely independent of season or fish size, although the data lacked small (total length, L_T, <130 mm) and young (<3 years) S. alpinus. Liver isotope values of intermediate‐sized S. alpinus (200–350 mm), however, suggested exploitation of the increase in the abundance of pelagic zooplankton in the late open‐water season. The results suggest that, in general, a strong littoral reliance of fishes can be a feature in subarctic lakes throughout the year. Due to its faster isotopic turnover rate and thus higher resolution for temporal diet changes, liver could be more commonly used in stable‐isotope studies of fish trophic niche shifts instead of using only the less responsive muscle tissue.     

Mechanistic modeling of climate effects on redistribution and population growth in a community of fish species

Understanding community responses to climate is critical for anticipating the future impacts of global change. However, despite increased research efforts in this field, models that explicitly include important biological mechanisms are lacking. Quantifying the potential impacts of climate change on species is complicated by the fact that the effects of climate variation may manifest at several points in the biological process. To this end, we extend a dynamic mechanistic model that combines population dynamics, such as species interactions, with species redistribution by allowing climate to affect both processes. We examine their relative contributions in an application to the changing biomass of a community of eight species in the Gulf of Maine using over 30 years of fisheries data from the Northeast Fishery Science Center. Our model suggests that the mechanisms driving biomass trends vary across space, time, and species. Phase space plots demonstrate that failing to account for the dynamic nature of the environmental and biologic system can yield theoretical estimates of population abundances that are not observed in empirical data. The stock assessments used by fisheries managers to set fishing targets and allocate quotas often ignore environmental effects. At the same time, research examining the effects of climate change on fish has largely focused on redistribution. Frameworks that combine multiple biological reactions to climate change are particularly necessary for marine researchers. This work is just one approach to modeling the complexity of natural systems and highlights the need to incorporate multiple and possibly interacting biological processes in future models.     

长期保护性耕作对黄土高原旱地土壤水分及作物叶水势的影响

通过长期定位试验研究了黄土高原西部旱农区,传统耕作方式和5种保护性耕作措施对豌豆-小麦(P→W)和小麦-豌豆(W→P)轮作序列的耕层土壤水分和作物叶水势的影响。结果表明,与传统耕作(T)处理相比,保护性耕作都能不同程度地提高0—30 cm土层土壤含水量,增幅为3.29%—28.67%,其中免耕+秸秆覆盖(NTS)处理的土壤含水量在整个生育期内均为最高。豌豆和春小麦在不同生育期,叶水势的日变化趋势大致相同,均为清晨6:00最高,然后随着时间的推移而下降,大约在12:00—14:00之间达到最低,随后逐渐回升。春小麦各处理在拔节期和抽穗期的叶水势相对较高,孕穗期和开花期次之,灌浆期最低;叶片相对含水量在拔节期和抽穗期最高,开花期次之,灌浆期最低。豌豆各处理的叶水势均在出苗期和孕蕾期达到了最大值,分枝和开花期结荚期次之,灌浆成熟期相对较低;叶片相对含水量均随生育期的进程而呈下降趋势。整个生育期春小麦和豌豆各处理10:00的叶水势与0—30 cm平均土壤含水量之间显著相关,当土壤水分含量较低时,春小麦和豌豆叶水势与耕层土壤含水量的相关性达极显著水平。与传统耕作(T)相比,免耕+秸秆覆盖(NTS)、免耕+地膜覆盖(NTP)、免耕(NT)、传统耕作+秸秆还田(TS)、地膜覆盖(TP)5种保护性耕作措施能不同程度的提高作物叶水势、叶片相对含水量和作物产量,其中免耕+秸秆覆盖(NTS)的优势最明显。