Bacterial Community Structure in Patagonian Andean Lakes Above and Below Timberline: From Community Composition to Community Function

Lakes located above the timberline are remote systems with a number of extreme environmental conditions, becoming physically harsh ecosystems, and sensors of global change. We analyze bacterial community composition and community-level physiological profiles in mountain lakes located in an altitude gradient in North Patagonian Andes below and above the timberline, together with dissolved organic carbon (DOC) characterization and consumption. Our results indicated a decrease in 71 % of DOC and 65 % in total dissolved phosphorus (TDP) concentration as well as in bacteria abundances along the altitude range (1,380 to 1,950 m a.s.l.). Dissolved organic matter (DOM) fluorescence analysis revealed a low global variability composed by two humic-like components (allochthonous substances) and a single protein-like component (autochthonous substances). Lakes below the timberline showed the presence of all the three components, while lakes above the timberline the protein-like compound constituted the main DOC component. Furthermore, bacterial community composition similarity and ordination analysis showed that altitude and resource concentration (DOC and TDP) were the main variables determining the ordination of groups. Community-level physiological profiles showed a mismatch with bacteria community composition (BCC), indicating the absence of a relationship between genetic and functional diversity in the altitude gradient. However, carbon utilization efficiencies varied according to the presence of different compounds in DOM bulk. The obtained results suggest that the different bacterial communities in these mountain lakes seem to have similar metabolic pathways in order to be able to exploit the available DOC molecules.     

Community ecology: top-down turned upside-down

Within African savannas, elephants often damage individual trees to the extent that they influence tree density. New research shows that mutualistic ants inhabiting certain species of Acacia protect trees from catastrophic herbivory by elephants. Protection by the ants stabilizes tree cover across savannas in what is otherwise a highly dynamic biome.     

Community convergence: Ecological and evolutionary

Ecologists have often compared ecological communities in different areas, for example on different continents. The main interest is that the communities might be more similar in the characters of their species than expected under a null model of random species assortment. We suggest that such a null model should be based only on the species observed across the samples. Species-level convergence and community-level convergence must be distinguished. Physical filters (limitation to growth by the physical environment) can give species-level convergence, but only biotic filtering (based on species interactions) can give community-level convergence. Matching to species and species mutual matching must also be distinguished; the process is different, but the same tests work for both.     

Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction

Metabolic network modeling of microbial communities provides an in‐depth understanding of community‐wide metabolic and regulatory processes. Compared to single organism analyses, community metabolic network modeling is more complex because it needs to account for interspecies interactions. To date, most approaches focus on reconstruction of high‐quality individual networks so that, when combined, they can predict community behaviors as a result of interspecies interactions. However, this conventional method becomes ineffective for communities whose members are not well characterized and cannot be experimentally interrogated in isolation. Here, we tested a new approach that uses community‐level data as a critical input for the network reconstruction process. This method focuses on directly predicting interspecies metabolic interactions in a community, when axenic information is insufficient. We validated our method through the case study of a bacterial photoautotroph–heterotroph consortium that was used to provide data needed for a community‐level metabolic network reconstruction. Resulting simulations provided experimentally validated predictions of how a photoautotrophic cyanobacterium supports the growth of an obligate heterotrophic species by providing organic carbon and nitrogen sources. J. Cell. Physiol. 231: 2339–2345, 2016. © 2016 The Authors. Journal of Cellular Physiology Published by Wiley Periodicals, Inc.