Femoral neck bone adaptation to weight-bearing physical activity by computational analysis

Individual differences in bone mass distribution at the proximal femur may be determined by daily weight-bearing physical activity (PA) since bone self-adapts according to the mechanical loads that is submitted. The aim of this study was to analyse computationally the effect of different weight-bearing PA types in the adaptation of the femoral neck (FN) by analysing regional differences in bone mineral density (BMD) at the integral FN and its superior, inferior, anterior and posterior subregions. To achieve this, it was adopted a 3-D femoral finite element (FE) model coupled with a suitable bone remodeling model. Different PA types were determined based both on ordinary lifestyle and mechanically more demanding PA as low magnitude impacts (L–I), moderate-magnitude impacts from odd directions (O–I) and high-magnitude vertical impacts (H–I). It was observed that as time spent in weight-bearing PA increases, BMD augment around the integral FN, but with different bone mass gain rates between subregions depending on the magnitude and directions of the hip contact forces; H–I was the type of weight-bearing PA which structurally most favor the gain of bone mass superiorly at the FN while both the H–I and the O–I types of PA promoted the largest bone mass gain rates at the anterior and posterior subregions of the FN. Because these types of weight-bearing PA were associated with a more uniform bone mass spatial distribution at the FN, they should provide a potential basis for targeted PA-based intervention programs for improving hip strength.     

Pollen heteromorphism is pervasive in <Emphasis Type="Italic">Thalictrum</Emphasis> (Ranunculaceae)

Among the angiosperms, features of pollen morphology such as grain size, aperture number and surface ornamentation display striking variation. It is less well appreciated that pollen morphology may vary within and among populations of the same species as well as within individual plants. In some species, individual plants produce multiple types of fertile pollen grains (called pollen heteromorphism). Aspects of pollen morphology, such as aperture number, are likely to affect fertilization success with different morphologies favored in different local competitive and ecological environments. This study surveys variation in pollen grain morphology among species throughout the genus Thalictrum. Pollen from individuals of 36 species was rehydrated from herbarium specimens, and light microscopy was used to quantify pollen grain aperture number and size. I find that pollen aperture-number heteromorphism is present within all Thalictrum species studied, and distributions of aperture-number morphs vary both within and among species. This study provides an example of significant pollen heteromorphism within a genus that also varies widely for pollination mode and sexual system.     

The incidental response to uniform natural selection

When populations are exposed to novel conditions of growth, they often become adapted to a similar extent, and at the same time, evolve some degree of impairment in their original environment. They may also come to vary widely with respect to characters which are uncorrelated with fitness, as the result of chance genetic associations among the founders, when these are a small sample from a large and variable ancestral population. I report an experiment in which 240 replicate lines of the unicellular chlorophyte Chlamydomonas were derived from primarily photoautotrophic ancestors and cultured as heterotrophs in the dark. All adapted to the dark and were impaired in the light after several hundred generations of culture. They also displayed a wide range of colony morphologies that were uncorrelated with fitness. This incidental response to selection probably arose through random variation in the initial composition of the lines. The differences between closely related species or varieties may likewise arise, in similar circumstances, by sampling error rather than natural selection.     

How do visitation patterns vary among pollinators in relation to floral display and floral design in a generalist pollination system?

Diverse pollinator assemblages may impose complex selection and thus limit specialisation to particular pollinators. Previous work has concentrated on how visitation rates of different pollinators vary in space and time and how pollinators may vary in efficiency. In this study I quantify variation in visitation rates and foraging behaviour of different insect types (1) in space and time and (2) in relation to variation in floral design (flower size and form) and floral display (number of open flowers) for the distylous clonal shrub Jasminum fruticans. Mean visitation rate showed a significant interaction between insect type and population for seven populations in one year, and between insect types and years for a single population over 3 years. There was also a significant interaction between insect type and population for the proportion of flowers visited. In general the number of visits was positively related to the number of open flowers in a patch, but analyses by insect type showed that this was only true for bee flies and butterflies. Short-tongued bees showed a positive relationship between visitation rate and the number of open flowers on the focal stem, and hawkmoths and butterflies made more visits to plants with larger flowers. Hawkmoths were the only insect type to show a positive relation between the number of flowers visited per foraging bout and flower size. The significant differences between different insect types in patterns of variation in visitation rates in response to floral design and display may act to diversify selection on floral traits, and thereby constrain specialisation of the plant to particular pollinators.     

Flexible nest-site selection under anthropogenic habitat change in an Afrotropical understorey insectivore

Human activities impact upon natural habitats used by birds for breeding and foraging, and lead to changes in the composition and spatial distribution of predator communities, mainly through loss, fragmentation and disturbance of formerly pristine habitat. Yet possible fitness consequences of such changes through impacts on bird nest-site selection remain poorly known. Here we study nest-site selection and reproductive success of Placid Greenbuls Phyllastrephus placidus in the Taita Hills, southeast Kenya. We show that habitat features associated with nest-site selection by this insectivorous, open-cup-nesting bird species vary among forest fragments that are exposed to different levels of habitat disturbance. Such differences in sites selected for breeding result from a plastic response to fragment-specific conditions or may be driven by fragment-specific variation in the distribution and availability of certain habitat features. Given the overall high nest predation rates in our study area, we expected variation in nest-site selection to correlate with reproductive success and nestling condition, but detected no such relationship. Because predator density and nest predation rates may vary strongly in space and time, a better understanding of spatio-temporal variation in predator communities is needed to assess the possible adaptive value of nest-site selection strategies for reducing the high predation rates that are typical for this and many other open-cup-nesting tropical passerines.     

Reconciling the community with a concept—The uniformitarian principle in the dendro-sciences

The uniformitarian principle is one of the most important foundations of all dendro- and paleo-sciences. Without it, no inferences about the past can be made. However, the use of this principle in our community is not consistent and partially incorrect, with the main confusion relating to the understanding of the “uniformitarian principle” as somehow implying a stable relationship between climate and tree growth. To solve this, we look briefly at the history of the term, show how we teach this principle in our textbooks, give some examples of incorrect applications of this principle in the recent literature and close with a simple, logical and straightforward interpretation of this principle to the dendro-community. Applying the principle of aggregate tree growth we show that instable climate-growth relationships and the “no-analogue problem” are not a violation of the uniformitarian principle, but rather reflect our incomplete understanding of tree growth processes. Simply stated: The “uniformitarian principle” is an a priori assumption of spatial and temporal invariance of law’s describing nature’s processes. Applied to the dendro-sciences it means that the principle of aggregate tree growth is valid in time and space.     

Pulsatile flow through a constricted tube: effect of stenosis morphology on hemodynamic parameters

In this paper, we investigate pulsatile flow through a constricted tube with the aim of assessing the effect of stenosis morphology on hemodynamic parameters. The fluid-solid interaction of pulsatile flow through a compliant tube with elastic walls was simulated using an arbitrary Lagrangian-Eulerian (ALE) finite-element method. We consider blood flow through various mild stenoses of 25.8% severity in diameter with trapezoidal and bell-like morphologies at a fixed Womersley number of 7.75. The results show that the distribution of the time-averaged wall shear stress (TAWSS), which is the main factor affecting the hemodynamic parameters, strongly depends on the axial stretch of the stenosis; elongation of the stenotic region increases by 41.1% the maximum TAWSS for stenoses of trapezoidal morphology whereas the maximum TAWSS decreases by 14.8% for the corresponding stenoses of bell-like morphology. The present findings indicate that risk factors due to atherosclerosis may vary in a complicated manner as an atheromatous plaque gradually builds up and morphs with time.     

Lag time in microbe growth as an age-dependent branching process with two phase types

We study a two-type, age-dependent branching process in which the branching probabilities of one of the types may vary with time. Specifically this modification of the Bellman-Harris process starts with a Type I particle which may either die or change to a Type II particle depending upon a time varying probability. A Type II particle may either die or reproduce with fixed probabilities but may not return to a particle of Type I. In this way the process models the lag phenomenon observed in microbe growth subsequent to transfer to a new culture medium while the organism is adapting to its new environment. We show that if the mean reproduction rate of Type II particles exceeds 1, then the population size grows exponentially. Further the extinction probability for this process is related to that of the Bellman-Harris process. Finally the governing equations are solved for several choices of the growth parameters and the solutions are graphically displayed showing that a wide variety of behavior can be modeled by this process.     

Spatial and temporal variability of biomass and composition of green tides in Ireland

Although nutrient enrichment of estuarine and coastal waters is considered a key factor for the development of green tides, the extent, distribution, and species composition of blooms vary among systems of similar nutrient loading, which compromises our ability to predict these events based on information about nutrient status alone. Additional factors may play a role in the control and development of macroalgal blooms. The identification of relevant scales of variation is a necessary prerequisite before explanatory models can be proposed and tested. In this study spatial and temporal patterns of biomass distribution were assessed for two Ulva morphologies in two Irish estuaries heavily affected by green tides (wet biomass >1 kg m⁻² during the peak bloom). Moreover, using genetic markers, the species composition of these green tides was assessed. Results revealed that these blooms were multi-specific, with Ulva prolifera, U. compressa and U.rigida the most frequent species. The species U. prolifera and U. compressa usually showed a tubular morphology, while U. rigida was mainly laminar. A seasonal succession common to both estuaries was also identified, with the bloom dominated by tubular species during spring and early summer, and co-dominated by tubular and laminar morphologies during late summer and autumn. Moreover, tubular and laminar morphologies exhibited different distribution patterns, with tubular morphologies varying at bigger spatial scales and higher biomass than the laminar. As tubular and laminar morphologies exhibited different distribution patterns, varying tubular morphologies along bigger spatial scales with higher biomass levels than the laminar. Considering that tubular morphologies were usually anchored to the sediment, while laminar Ulva were usually observed free-floating, these differences could explain a differential influence by water motion. An important annual and decadal variability in biomass levels of Ulva was observed, in the case of the Tolka estuary a noticeable increase over the last two decades. These findings should be considered for the development of management and monitoring strategies since the different habitat of laminar and tubular morphologies (anchored vs. free-floating) may play an important role in the balance of nutrients and biomass in the estuary, or determine the response to pollutant exposure. Furthermore, the presence of different species with different ecological requirements could favour the duration and extension of the bloom though temporal and spatial successions.     

A method for the estimation of parameters for natural stage-structured populations

A relatively simple method is proposed for the estimation of parameters of stage-structured populations from sample data for situation where (a) unit time survival rates may vary with time, and (b) the distribution of entry times to stage 1 is too complicated to be fitted with a simple parametric model such as a normal or gamma distribution. The key aspects of this model are that the entry time distribution is approximated by an exponential function withp parameters, the unit time survival rates in stages are approximated by anr parameter exponential polynomial in the stage number, and the durations of stages are assumed to be the same for all individuals. The new method is applied to four Zooplankton data sets, with parametric bootstrapping used to assess the bias and variation in estimates. It is concluded that good estimates of demographic parameters from stagefrequency data from natural populations will usually only be possible if extra information such as the durations of stages is known.     

Diet reveals links between morphology and foraging in a cryptic temperate reef fish

Predators select prey so as to maximize energy and minimize manipulation time. In order to reduce prey detection and handling time, individuals must actively select their foraging space (microhabitat) and populations exhibit morphologies that are best suited for capturing locally available prey. We explored how variation in diet correlates with habitat type, and how these factors influence key morphological structures (mouth gape, eye diameter, fin length, fin area, and pectoral fin ratio) in a common microcarnivorous cryptic reef fish species, the triplefin Helcogrammoides cunninghami. In a mensurative experiment carried out at six kelp‐dominated sites, we observed considerable differences in diet along 400 km of the Chilean coast coincident with variation in habitat availability and prey distributions. Triplefins preferred a single prey type (bivalves or barnacles) at northern sites, coincident with a low diversity of foraging habitats. In contrast, southern sites presented varied and heterogeneous habitats, where triplefin diets were more diverse and included amphipods, decapods, and cumaceans. Allometry‐corrected results indicated that some morphological structures were consistently correlated with different prey items. Specifically, large mouth gape was associated with the capture of highly mobile prey such as decapods, while small mouth gape was more associated with cumaceans and copepods. In contrast, triplefins that capture sessile prey such as hydroids tend to have larger eyes. Therefore, morphological structures co‐vary with habitat selection and prey usage in this species. Our study shows how an abundant generalist reef fish exhibits variable feeding morphologies in response to the distribution of potential habitats and prey throughout its range.     

Below-ground ectomycorrhizal communities: the effect of small scale spatial and short term temporal variation

Ectomycorrhizal (ECM) associations are an important form of symbiosis for the majority of tree species. In forest ecosystems where nutrients are often limited, ECM associations are vital for seedling establishment and tree survival. ECM communities are often very species rich and frequently follow the log normal distribution??with a few species being abundant and many species being rare. Much of the current knowledge of ECM communities has been revealed through a combination of above-ground sporocarp and below-ground root tip analyses. However, above-ground surveys of ECM communities reveal largely different findings regarding ECM diversity and community structure to below-ground surveys. Therefore below-ground surveys are vital to our understanding of ECM biology, ecology and community dynamics. In this article I review the recent findings regarding how ECM communities vary both spatially and temporally in forests. Spatial variation occurs at the centimetre scale both horizontally and vertically in forests, and can be explained by the separation of the ECM community into distinct niches. Temporal variation occurs over relatively short time scales, with ECM communities showing large changes even on a monthly basis. I then apply the niche concept to ECM fungi, and review a recent theory, ECM functional morphology, and examine how this may be used to explain a significant amount of spatial and temporal variation in forest ECM communities. The functional morphology theory is particularly useful in explaining patterns of ECM community variation across the distinct successional stages of the forest cycle. However, the effect of other abiotic and biological variables on ECM communities should not be ignored. Finally, as ECM communities are non-randomly distributed and vary widely in species richness over time, I lay out a sampling strategy to provide representative samples of the actual ECM community in the study area. Using (i) an extensive sampling methodology, (ii) separation of samples at distances greater than levels of spatial autocorrelation, and (iii) samples collected throughout the year, over a number of years, an ample picture of the ECM community in temperate forests can be collected.     

Permafrost collapse alters soil carbon stocks,respiration, CH4, and N2O in upland tundra

Release of greenhouse gases from thawing permafrost is potentially the largest terrestrial feedback to climate change and one of the most likely to occur; however, estimates of its strength vary by a factor of thirty. Some of this uncertainty stems from abrupt thaw processes known as thermokarst (permafrost collapse due to ground ice melt), which alter controls on carbon and nitrogen cycling and expose organic matter from meters below the surface. Thermokarst may affect 20–50% of tundra uplands by the end of the century; however, little is known about the effect of different thermokarst morphologies on carbon and nitrogen release. We measured soil organic matter displacement, ecosystem respiration, and soil gas concentrations at 26 upland thermokarst features on the North Slope of Alaska. Features included the three most common upland thermokarst morphologies: active‐layer detachment slides, thermo‐erosion gullies, and retrogressive thaw slumps. We found that thermokarst morphology interacted with landscape parameters to determine both the initial displacement of organic matter and subsequent carbon and nitrogen cycling. The large proportion of ecosystem carbon exported off‐site by slumps and slides resulted in decreased ecosystem respiration postfailure, while gullies removed a smaller portion of ecosystem carbon but strongly increased respiration and N₂O concentration. Elevated N₂O in gully soils persisted through most of the growing season, indicating sustained nitrification and denitrification in disturbed soils, representing a potential noncarbon permafrost climate feedback. While upland thermokarst formation did not substantially alter redox conditions within features, it redistributed organic matter into both oxic and anoxic environments. Across morphologies, residual organic matter cover, and predisturbance respiration explained 83% of the variation in respiration response. Consistent differences between upland thermokarst types may contribute to the incorporation of this nonlinear process into projections of carbon and nitrogen release from degrading permafrost.     

Prospects of nanoparticle–DNA binding and its implications in medical biotechnology

Bio-nanotechnology is a new interdisciplinary R&D area that integrates engineering and physical science with biology through the development of multifunctional devices and systems, focusing biology inspired processes or their applications, in particular in medical biotechnology. DNA based nanotechnology, in many ways, has been one of the most intensively studied fields in recent years that involves the use and the creation of bio-inspired materials and their technologies for highly selective biosensing, nanoarchitecture engineering and nanoelectronics. Increasing researches have been offered to a fundamental understanding how the interactions between the nanoparticles and DNA molecules could alter DNA molecular structure and its biochemical activities. This minor review describes the mechanisms of the nanoparticle–DNA binding and molecular interactions. We present recent discoveries and research progresses how the nanoparticle–DNA binding could vary DNA molecular structure, DNA detection, and gene therapy. We report a few case studies associated with the application of the nanoparticle–DNA binding devices in medical detection and biotechnology. The potential impacts of the nanoparticles via DNA binding on toxicity of the microorganisms are briefly discussed. The nanoparticle–DNA interactions and their impact on molecular and microbial functionalities have only drown attention in recent a few years. The information presented in this review can provide useful references for further studies on biomedical science and technology.     

Allelic heterogeneity and trade-off shape natural variation for response to soil micronutrient

As sessile organisms, plants have to cope with diverse environmental constraints that may vary through time and space, eventually leading to changes in the phenotype of populations through fixation of adaptive genetic variation. To fully comprehend the mechanisms of evolution and make sense of the extensive genotypic diversity currently revealed by new sequencing technologies, we are challenged with identifying the molecular basis of such adaptive variation. Here, we have identified a new variant of a molybdenum (Mo) transporter, MOT1, which is causal for fitness changes under artificial conditions of both Mo-deficiency and Mo-toxicity and in which allelic variation among West-Asian populations is strictly correlated with the concentration of available Mo in native soils. In addition, this association is accompanied at different scales with patterns of polymorphisms that are not consistent with neutral evolution and show signs of diversifying selection. Resolving such a case of allelic heterogeneity helps explain species-wide phenotypic variation for Mo homeostasis and potentially reveals trade-off effects, a finding still rarely linked to fitness.     

Experimental evolution of dispersal in spatiotemporally variable microcosms

The world is an uncertain place. Individuals’ fates vary from place to place and from time to time. Natural selection in unpredictable environments should favour individuals that hedge their bets by dispersing offspring. I confirm this basic prediction using Caenorhabditis elegans in experimental microcosms. My results agree with evolutionary models and correlations found previously between habitat stability and individual dispersal propensity in nature. However, I also find that environmental variation that triggers conditional dispersal behaviour may not impose selection on baseline dispersal rates. These findings imply that an increased rate of disturbance in natural systems has the potential to cause an evolutionary response in the life history of impacted organisms.     

Linear center-of-mass dynamics emerge from non-linear leg-spring properties in human hopping

Given the almost linear relationship between ground-reaction force and leg length, bouncy gaits are commonly described using spring–mass models with constant leg-spring parameters. In biological systems, however, spring-like properties of limbs may change over time. Therefore, it was investigated how much variation of leg-spring parameters is present during vertical human hopping. In order to do so, rest-length and stiffness profiles were estimated from ground-reaction forces and center-of-mass dynamics measured in human hopping. Trials included five hopping frequencies ranging from 1.2 to 3.6 Hz. Results show that, even though stiffness and rest length vary during stance, for most frequencies the center-of-mass dynamics still resemble those of a linear spring–mass hopper. Rest-length and stiffness profiles differ for slow and fast hopping. Furthermore, at 1.2 Hz two distinct control schemes were observed.     

On the accuracy of a diffusion approximation to a discrete state–space Markovian model of a population

The traditional Kolmogorov equations treat the size of a population as a discrete random variable. A model is introduced that extends these equations to incorporate environmental variability. Difficulties with this discrete model motivate approximating the population size as a continuous random variable through the use of diffusion processes. The set of cumulants for both the population size and the environmental factors affecting the population size characterize the population–environmental system. The evolution of this set, as predicted by the diffusion approximation, closely matches the corresponding predictions for the discrete model. It is also noted that the simulation estimates of the cumulants against which the predictions of the diffusion model are checked can vary considerably between simulations — despite averaging over a large number of simulation runs. The precision of the simulation estimates–both over time and with differing cumulant order–is discussed.     

Inconsistency in the experimentally derived relationship between epilithon abundance and the micro-distribution of Agapetus monticolus (Trichoptera)

Abstract Studies of the micro-distribution of herbivorous lotic macroinvertebrates have tended to rely on short-term experiments. While these experiments have provided information on the factors that determine the distributions of herbivorous invertebrates, they ignore the complexity of the epilithon as a food source, any interaction between physical and biological factors and the possibility that the factors that determine an invertebrate species’ distribution may vary through time. Five colonization experiments were performed in an Australian upland stream to determine the role of epilithon abundance in the distribution of an abundant invertebrate (Agapetus monticolus: Trichoptera). Artificial cobbles with different types and amounts of epilithon were placed in the Taggerty River at two sites and the response of A. monticolus recorded. The experiments revealed that, although A. monticolus expressed a preference for patches of epilithon with abundant periphyton, the response varied among experiments performed at different times and was always secondary to the flow preferences of A. monticolus. Studies that fail to acknowledge the presence of temporal variation in the response of animals to their environment run the risk that they will over- or underestimate the importance of particular factors because of the timing of their experiment.     

DISPARITY: MORPHOLOGICAL PATTERN AND DEVELOPMENTAL CONTEXT

Abstract:  The distribution of organic forms is clumpy at any scale from populations to the highest taxonomic categories, and whether considered within clades or within ecosystems. The fossil record provides little support for expectations that the morphological gaps between species or groups of species have increased through time as it might if the gaps were created by extinction of a more homogeneous distribution of morphologies. As the quantitative assessments of morphology have replaced counts of higher taxa as a metric of morphological disparity, numerous studies have demonstrated the rapid construction of morphospace early in evolutionary radiations, and have emphasized the difference between taxonomic measures of morphological diversity and quantitative assessments of disparity. Other studies have evaluated changing patterns of disparity across mass extinctions, ecomorphological patterns and the patterns of convergence within ecological communities, while the development of theoretical morphology has greatly aided efforts to understand why some forms do not occur. A parallel, and until recently, largely separate research effort in evolutionary developmental biology has established that the developmental toolkit underlying the remarkable breadth of metazoan form is largely identical among Bilateria, and many components are shared among all metazoa. Underlying this concern with disparity is a question about temporal variation in the production of morphological innovations, a debate over the relative significance of the generation of new morphologies vs. differential probabilities of their successful introduction, and the relative importance of constraint, convergence and contingency in the evolution of form.