Small theropod teeth from the Upper Jurassic coal mine of Guimarota (Portugal)

Isolated teeth of small theropod dinosaurs from the Upper Jurassic lignite coal mine of Guimarota (near Leiria, Portugal) are described and illustrated. The well known Upper Jurassic theropods from Europe,Archaeopteryx andCompsognathus, are the most common taxa in the Guimarota assemblage. One morphotype is closely related to an allosaurid theropod. Six further morphotypes of theropod teeth are also described, which are closely related to Cretaceous theropods such as dromaeosaurids, troodontids, tyrannosaurids,Richardoestesia andParonychodon. A Late Jurassic origin of these groups of theropods, which is very often postulated, is discussed.     

The origin of snakes (Serpentes) as seen through eye anatomy

Snakes evolved from lizards but have dramatically different eyes. These differences are cited widely as compelling evidence that snakes had fossorial and nocturnal ancestors. Their eyes, however, also exhibit similarities to those of aquatic vertebrates. We used a comparative analysis of ophthalmic data among vertebrate taxa to evaluate alternative hypotheses concerning the ecological origin of the distinctive features of the eyes of snakes. In parsimony and phenetic analyses, eye and orbital characters retrieved groupings more consistent with ecological adaptation rather than accepted phylogenetic relationships. Fossorial lizards and mammals cluster together, whereas snakes are widely separated from these taxa and instead cluster with primitively aquatic vertebrates. This indicates that the eyes of snakes most closely resemble those of aquatic vertebrates, and suggests that the early evolution of snakes occurred in aquatic environments.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81 , 469–482.     

An integrative phylogenetic and extrapolatory approach to the reconstruction of dromaeosaur (Theropoda: Eumaniraptora) shoulder musculature

Dromaeosauridae is the sister taxon of the Avialae; thus, an investigation of dromaeosaur shoulder girdle musculature and forelimb function provides substantial information regarding changes in the size and performance of the theropod shoulder girdle musculature leading to avian powered flight. Twenty-two shoulder girdle muscles were reconstructed for the dromaeosaurid shoulder apparatus, based on phylogenetic inference, which involves the comparison of lepidosaurian, crocodilian and avian musculature, and extrapolatory inference, which involves a secondary comparison with functional analogues of theropods. In addition to these comparative methodologies, osteological correlates of shoulder musculature preserved in eumaniraptorans are identified, and comparisons with those of extant archosaurs allow these muscles to be definitively inferred in dromaeosaurids. This muscle reconstruction provides a foundation for subsequent investigation of differences in muscular attachment and function, based on scapulocoracoid morphology, across the theropod lineage leading to birds.  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 146 , 301–344.     

Whole-genome duplications in South American desert rodents (Octodontidae)

The discovery of tetraploidy in the red viscacha rat, Tympanoctomys barrerae (4 n  = 102) has emphasized the evolutionary role of genome duplication in mammals. The tetraploid status of this species is corroborated here by in situ PCR and Southern blot analysis of a single-copy gene. The species meiotic configuration strongly suggests a hybrid derivation. To investigate the origin of T. barrerae further, the recently described Pipanacoctomys aureus was studied. This 92-chromosome species also has a duplicated genome size, redundant gene copy number and diploid-like meiotic pairing, consistent with an event of allotetraploidization. Phylogenetic analysis of mitochondrial sequences indicates sister-group relationships between these two tetraploid rodents. The new karyotypic data and the phylogenetic relationships suggest the participation of the ancestral lineages of Octomys mimax in the genesis of P. aureus . The high overall DNA similarity and shared band homology revealed by genomic Southern hybridization as well as matching chromosome numbers between O. mimax and the descendant tetraploid species support the notion of introgressive hybridization between these taxa.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 443–451.     

Seed dormancy in relation to seed storage behaviour in Acer

Dormancy in seeds of Acer opalus is shown to be mainly caused by the seed coats, although a slight embryo dormancy exists in fresh seeds. The ability to germinate after drying indicates that seed storage behaviour is orthodox. Recalcitrant seeds were heavier than orthodox seeds not only within section Acer but also within the whole genus after statistical control of phylogeny, through a phylogenetic ANOVA with data from two different Acer phylogenies. An evolutionary change from orthodox to recalcitrant behaviour is postulated for genus Acer , but this change appears not to have been accompanied by a change in seed dormancy, at least in the taxonomic section in which Acer opalus belongs.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 203–208.     

Functional morphology of neck musculature in the Tyrannosauridae (Dinosauria, Theropoda) as determined via a hierarchical inferential approach

With multiple well-preserved specimens, tyrannosaurid dinosaurs are ideal subjects for exploring the role of the neck for feeding in an extinct amniote clade. Detailed exploration of the morphology of avian and crocodilian neck muscles grounds phylogenetic inference of musculature of tyrannosaurids. Introduced methods of kinematic and physiological inference explicate action and function of tyrannosaurid neck muscles, and the explicit method of extant behavioural interpolation (EBI) allows inference of generalized behaviours. Anteriorly originating craniocervical muscles of tyrannosaurids, and insertions of the neck dorsiflexor m. transversospinalis cervicis, were similar to those of birds, while the major respective head dorsiflexor and lateroflexor, m. transversospinalis capitis and m. longissimus capitis superficialis, resembled their homologues in crocodilians. Because the proposed inferential methods are cumulative and emphasize mutual falsification, behavioural effects of muscle function become immediately testable rather than assumed. Kinematic inference of muscle moment topology, and bracketed and unipolar inference of muscle activity, facilitate EBI of rapid gaze shifts, lateral and sagittal strikes, inertial feeding, and tearing of flesh by specific permutational actions of tyrannosaurid neck muscles. Several examples of EBI are tested further through biomechanical considerations.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 151 , 759–808.     

Fruits and seeds of Ruppia (Potamogetonaceae) from the Pliocene of Yushe Basin, Shanxi, northern China and their ecological implications

Numerous fruits and seeds of Ruppia are reported from the Upper Pliocene (2.3–3.5 Myr ago) Zhangcun Formation in Yushe Basin, Shanxi, northern China. They are the first fossil Ruppia from China and demonstrate the importance of fruit and seed fossils in recording genera not represented by fossil leaves. These Ruppia are characterized by possessing a small oval endocarp, smooth endocarp surface, distinct elliptical external depressions, distinct apical mucro, slightly curved seed shape and conspicuous globose hilum. A new species, R. yushensis Zhao, Collinson and Li, is described from these endocarp and seed features. Comparison with the two European Miocene species, R. palaeomaritima Negru and R. maritime-miocenica Szafer, indicates the existence at that time of three different geographical and stratigraphical species. R. yushensis constitutes the first Pliocene record of Ruppia and extends the range of fossils of this genus from Europe to eastern Asia. R. yushensis is the only aquatic plant in the uppermost middle part of the Zhangcun Formation. This monotypic occurrence indicates a brackish, clear, tranquil and shallow lake in this region in the Late Pliocene. The smooth endocarp surface further suggests a warm temperate or temperate palaeoclimate.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 317–329.     

Diversity of late Maastrichtian Tyrannosauridae (Dinosauria: Theropoda) from western North America

The tooth taxon Aublysodon mirandus was reinstated following the collection of nondenticulate tyrannosaurid premaxillary teeth from late Maastrichtian deposits in western North America. A small skull from the Hell Creek Formation of Montana (the 'Jordan theropod', LACM 28471), that was associated with a nondenticulate premaxillary tooth, was referred to Aublysodon and the diagnosis was revised to include cranial bones. However, the 'premaxillary' tooth of the specimen is actually a maxillary tooth. The small size of Aublysodon crowns, and evidence that some denticles develop late in growth in theropods, indicates that the nondenticulate condition represents immaturity. Therefore, Aublysodon is a nomen dubium. The Jordan theropod was recently designated as the type specimen of Stygivenator molnari . A tyrannosaurid from the Hell Creek Formation of Montana (LACM 23845) was first referred to Albertosaurus cf. A. lancensis and then later became the type specimen of Dinotyrannus megagracilis . On the basis of shared derived characters and a quantitative reconstruction of the growth series of Tyrannosaurus rex , the type specimens of S. molnari and D. megagracilis are juvenile and subadult specimens of T. rex , respectively. There is currently evidence for only one tyrannosaurid species in the late Maastrichtian of western North America: T. rex .  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 142 , 479–523.     

Olfactory acuity in theropods: palaeobiological and evolutionary implications

This research presents the first quantitative evaluation of the olfactory acuity in extinct theropod dinosaurs. Olfactory ratios (i.e. the ratio of the greatest diameter of the olfactory bulb to the greatest diameter of the cerebral hemisphere) are analysed in order to infer the olfactory acuity and behavioural traits in theropods, as well as to identify phylogenetic trends in olfaction within Theropoda. A phylogenetically corrected regression of olfactory ratio to body mass reveals that, relative to predicted values, the olfactory bulbs of (i) tyrannosaurids and dromaeosaurids are significantly larger, (ii) ornithomimosaurs and oviraptorids are significantly smaller, and (iii) ceratosaurians, allosauroids, basal tyrannosauroids, troodontids and basal birds are within the 95% CI. Relative to other theropods, olfactory acuity was high in tyrannosaurids and dromaeosaurids and therefore olfaction would have played an important role in their ecology, possibly for activities in low-light conditions, locating food, or for navigation within large home ranges. Olfactory acuity was the lowest in ornithomimosaurs and oviraptorids, suggesting a reduced reliance on olfaction and perhaps an omnivorous diet in these theropods. Phylogenetic trends in olfaction among theropods reveal that olfactory acuity did not decrease in the ancestry of birds, as troodontids, dromaeosaurids and primitive birds possessed typical or high olfactory acuity. Thus, the sense of smell must have remained important in primitive birds and its presumed decrease associated with the increased importance of sight did not occur until later among more derived birds.     

Isoetes fluitans sp. nov.: the identity of Spanish plants of 'I. longissimum'

Recent revision of North African specimens of Isoetes velata A. Braun and the closely related taxon I. longissimum Bory, together with Spanish material conventionally designated I. longissimum , suggests that the Spanish specimens constitute a new species, I. fluitans . This is described and illustrated. The North African taxon I. longissimum is probably not specifically distinct from I. velata .  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 231–236.     

Two new species of Sicyos (Cucurbitaceae) from Guerrero and Oaxaca, Mexico

Two new species of Sicyos from Mexico are described and illustrated: Sicyos cordifolius from the state of Guerrero, which belongs to the group with dry, armed fruits, and Sicyos bulbosus from the state of Oaxaca, which belongs to the group with fleshy, unarmed fruits. Sicyos cordifolius is quite different from the rest of the species previously described. Although S. bulbosus is very similar to S. galeottii Cogn., it is clearly different in receptacle shape and size.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 373–378.     

Okeanomyces, a new genus to accommodate Halosphaeria cucullata (Halosphaeriales, Ascomycota)

The taxonomic affinity of Halosphaeria cucullata to Halosphaeria is reassessed based on a recent collection of this fungus. Halosphaeria cucullata is characterized by immersed, darkly coloured ascomata, clavate asci which deliquesce very early in development, and cylindrical ascospores with or without a polar cap-like appendage at one end. In a phylogenetic analysis of the LSU rDNA sequences from members of the Halosphaeriaceae, H. cucullata did not form a monophyletic clade with H. appendiculata , the type species of the genus. These results suggest that H. cucullata should not be included in Halosphaeria . Okeanomyces gen. nov. is proposed to accommodate this fungus.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 223–229.     

Comparative floral anatomy of Pontederiaceae

Floral anatomy is described in eight species (representing five genera) of Pontederiaceae, and floral ontogeny is described in Pontederia cordata. The results are assessed in the context of recent phylogenetic work on Pontederiaceae, which indicates that the unilocular ovary condition has been achieved by two different, non-homologous routes in Pontederiaceae: via loss of interlocular septa in Heteranthera and Hydrothrix , and via pseudomonomery in Pontederia , which has a single fertile carpel. Absence of septal nectaries has evolved more than once in Pontederiaceae, at least in Heterantha and Monochoria , probably due to a transfer of the insect reward from nectar to pollen in these taxa. The presence of an elliptical or linear unvascularized appendage on the abaxial outer stamen in Monochoria is also probably correlated with enantiostyly. In Pontederia , air spaces in the ovary wall are modified into canals, each with a ring of apparently secretory epithelial cells.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 144 , 395–408.     

A molecular study of phylogenetic relationships and evolution of antipredator strategies in Australian Diplodactylus geckos, subgenus Strophurus

We present phylogenetic analyses of the lizard genus Diplodactylus subgenus Strophurus using 1646 aligned positions of mitochondrial DNA sequences containing 893 parsimony-informative characters for samples of 12 species of Strophurus and 19 additional Australian gecko species. Sequences from three protein-coding genes (ND1, ND2 and COI) and eight intervening transfer RNA genes were examined using parsimony, maximum-likelihood and Bayesian analyses. Species of Strophurus appeared to form a monophyletic group with the possible exception of S. taenicauda . Strophurus has evolved two distinct defence/display characteristics: caudal glands, which expel an unpalatable substance, and striking mouth colours. Caudal glands appeared to have arisen once in a common ancestor of Strophurus , with dermal augmentation of caudal glands characterizing a subclade within the subgenus. Evolution of yellow and dark-blue mouth colours in Strophurus occurred in the context of diurnal activity and may be interpreted as an augmentation of defensive behavioural displays. Molecular divergence suggests that arboreality evolved in a common ancestor of Oedura and Strophurus approximately 29 Mya and that the caudal glands of Strophurus arose approximately 25 Mya.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 123–138.     

The relationship of Sophora sect. Edwardsia (Fabaceae) to Sophora tomentosa, the type species of the genus Sophora, observed from DNA sequence data and morphological characters

Sophora tomentosa , the type species of the genus Sophora , is shown by phylogenetic analyses of rbc L and ITS sequence data to be sister to Sophora sect. Edwardsia . S. tomentosa and most of the species from sect. Edwardsia share hypogeal germination, exstipulate leaves, and terete filaments. These species have buoyant seeds, and are distributed by ocean currents throughout the pantropics ( S. tomentosa ) and around southern temperate oceanic islands (sect. Edwardsia ). S. tomentosa differs from the species of sect. Edwardsia by its frutescent growth habit, terminal elongate inflorescence and smooth-walled legume. S. macrocarpa is unusual in sect. Edwardsia as its leaves have stipules, the filaments are winged, and the legume is smooth-walled.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 439–446.     

The relationship between skull morphology, biting performance and foraging mode in Kalahari lacertid lizards

Lizards are a diverse clade in which one radiation consists entirely of sit-and-wait foragers and another consists of wide foragers. Lizards utilizing these two foraging modes are known to differ in diet, but little is known about how feeding morphology relates to diet and/or foraging mode. This study tested the hypothesis that skull morphology and biting performance are related to diet preference, and consequently, coevolve with foraging mode. Four species of lacertid lizard were studied because they vary in foraging mode, their phylogenetic relationships are known and they are well studied ecologically. Using an 'ecomorphological' approach, skull morphology and biting performance were quantified and mapped on to the phylogeny for the species. The results indicate that sit-and-wait species have shorter, wider skulls than the wide foraging species, and that all are significantly different in overall head shape. The sit-and-wait species had similar values for biting performance; however, clear phylogenetic patterns of covariation were not present between sit-and-wait and wide foraging species for either biting performance or skull morphology. Thus, skull morphology and performance have little influence on diet and foraging mode in these species. Instead it is likely that other factors such as seasonal prey availability and/or life history strategy shape foraging mode decisions.  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 140 , 403–416.