Community Characteristics of Early Recovery Vegetation on Abandoned Lands of Shifting Cultivation in Bawangling of Hainan Island, South China

Shifting cultivation is a major form of agricultural practice in most parts of tropical regions worldwide. In places where the bush fallow period is excessively shortened or the period of cultivation is extended for too long, the rate of vegetation recovery and biodiversity on abandoned lands of shifting cultivation would decline. The recovery of the secondary plant communities could even be inhibited for a prolonged period because of grass occupancy. Because of the vital significance of the early recovery communities to secondary succession, we studied the community characteristics of early recovery vegetation on abandoned lands of shifting cultivation in Bawangling of Hainan Island. Measurements were made of the community composition and structure of early recovery vegetation. The sprouting abilities of different functional groups and different species in the same functional group, and the effect of the grass functional group on the composition and quantitative characteristics of tree and shrub functional groups were analyzed. Results indicated that only a few families, genera, or species apparently dominated in the early recovery vegetation on the abandoned lands of shifting cultivation and that deciduous species occurred with a rather high percentage in this early recovery community compared with the natural secondary or old growth forests. Smallsized individuals dominated the woody community. The abundance and basal area of sprouting stems for species in the tree functional group were greater than those of seeder stems, whereas the abundance and basal area of resprouters and seeders for species in the shrub functional group did not differ. The total abundance of stems for the community, stem abundances for species in tree or shrub functional groups, and for seeder or resprouter stems were all negatively correlated with coverage of the grass functional group. The mean sprouting ability in the tree functional group was greater than in the shrub functional group. The sprouting ability for different species in the same functional group was also significantly different.     

我国首次记录的微型硅藻——具刺原龙骨藻和伊岛棒杆藻及对其分类地位的讨论

Protokeelia is described as a new and rare pennate diatom genus in China. Its valve includes two parts： ventral valve and dorsal valve. The ventral valve is more or less convex or concave. The raphe runs in a distinct elevated and thickened siliceous ridge. In the internal valve, beneath the raphe are fibulae or fibulae clusters which connect the ventral and dorsal valves. One species, P. spinifera Round ＆ Basson, is observed in the water samples from a mangrove forest in Sai Kung, Hong Kong, China. Its main morphological features are described in this paper along with electron microscope （EM） photos. Morphological comparisons are also made among several allied species. In addition, a newly recorded species for China, Rhopalodia iriomotensis Kobayasi, Nagumo ＆ Tanaka, is discussed here. Because several key features observed in this species resemble those of some Protokeelia species, we suggest that it may actually represent a Protokeelia species.     

A special issue on DNA damage responses and genome maintenance

There is nothing more fundamental than the genome for the existence and maintenance of all living beings. The importance of the genome is increasingly appreciated as recent discoveries have revealed that changes in the human genome, regardless of being inherited or induced, can result in diseases that either significantly shorten lives （as seen in cancer） or dramatically affect the quality of lives （often seen in neurodegenerative diseases）. Therefore, maintaining genome integrity is critical for not only the continuation of a species in evolution （although mutations may be occasionally beneficial during evolution） but also for longevity and general health.     

Genotoxicity biomarkers in aquatic bioindicators

Pollution of the aquatic environment is an ever-growing problem, as waters are the ultimate sink for the large number of xenobiotics from multiple sources. DNA damaging agents have a significant ecological relevance since they are implicated in many pathological processes and exert effects beyond that of individual being active through following generations. A large number of methods have been applied to evaluate genotoxic damage in different aquatic species. Comet assay, as method for de- tecting DNA alterations, and micronucleus test, as an index of chromosomal damage are the most widely applied and validated methods in field studies. These methods were applied in different vertebrate and invertebrate aquatic species, but only mollusk and fish species have been employed in routine biomonitoring programs. Mussels, due to their widely geographical distribution and the suitability for caging represent the bioindicator of choice in field studies. Mytilus species is the most used marine mussel. The use of fish is limited to specific geographic areas. The present review mainly focuses on the application of comet assay and micronucleus test in mussels. A number of biomonitoring studies in mussels, using comet assay or micronucleus test, revealed exposure to different classes of genotoxic compounds with a good discrimination power. The different evidence from the two as- says, reflects different biological mechanisms for the two genetic endpoints, DNA damage and chromosomal damage, suggesting their combined application in the field. Different endogenous and exogenous factors have been shown to modulate the genotoxic responses in mussels, acting as confounding factors in environmental monitoring. The use of standardized protocol for caging, sampling and genotoxity evaluation is critical in biomonitoring studies. The use of a multimarker approach coupling genotoxicity biomarkers with physiological and biochemical factors allows to have a complete picture of the environmental pollution [Current Zoology 60 （2）： 273-284, 2014].     

Species diversity in restoration plantings: Important factors for increasing the diversity of threatened tree species in the restoration of the Araucaria forest ecosystem

The Araucaria forest ecosystem in southern Brazil is highly threatened: less than one percent of the original forest remains, and what is left is a fragmented agro-mosaic of mostly early-to-late secondary forest patches among high-yield agriculture and timber monocultures. Forest restoration initiatives in this region aim to restore degraded areas, however the limited number of species used in restoration projects represents a missed opportunity for species-rich plantings. High diversity plantings represent a larger number of functional groups and provide a targeted conservation strategy for the high number of threatened species within this ecosystem. This study interviewed nurseries(Ns) and restoration practitioners(RPs) in Parana and Santa Catarina states to identify what species are being cultivated and planted, and what factors are driving the species selection process. An average of 20 species were reportedly used in restoration plantings, most of which are common, widespread species. Baseline data confirms that Ns and RPs have disproportionately low occurrences of threatened species in their inventories and plantings, supporting findings from previous research. Questionnaire responses reveal that opportunities for seed acquisition are an extremely important factor in order for nurseries to increase their diversity of cultivated species. Results also suggest that facilitating speciesrich plantings for restoration practitioners would only be feasible if it did not increase the time required to complete planting projects, as it would minimize their ability to keep costs low. This study proposes solutions for increasing the number of species used in restoration practicedsuch as developing a comprehensive species list, fostering knowledge-sharing between actors, creating seed sharing programs, and increasing coordination of planting projects. Long-term strategies involve complimenting traditional ex situ approaches with emerging inter-situ and quasi in situ conservation strategies which simultaneously provide long-term preservation of genetic diversity and increase seed production of target species.     

Community Dynamics of Seed Rain in Mixed Evergreen Broad-leaved and Deciduous Forests in a Subtropical Mountain of Central China

Seed dispersal is a key process within community dynamics. The spatial and temporal variations of seed dispersal and the interspecific differences are crucial for understanding species coexistence and community dynamics. This might also hold for the mixed evergreen broadleaved and deciduous forests in the mountains of subtropical China, but until now little existing knowledge is available for this question. In 2001, we chose to monitor the seed rain process of our mixed evergreen broad-leaved and deciduous forest communities in Mount Dalaoling National Forest Park, Yichang, Hubei Province, China. The preliminary analyses show obvious variations in seed rain density, species compositions and timing of seed rain among four communities. The average seed rain densities of the four communities are 2.43 ± 5.15, 54.13 ±182.75, 10.05 ±19.30 and 24.91 ± 58.86 inds/m^2, respectively; about one tenth the values in other studies in subtropical forests of China. in each community, the seed production is dominated by a limited number of species, and the contributions from the others are generally minor. Fecundity of evergreen broadleaved tree species is weaker than deciduous species. The seed rain of four communities begins earlier than September, and stops before December, peaking from early September to late October. The beginning date, ending date and peak times of seed rain are extensively varied among the species, indicating different types of dispersal strategies. According to the existing data, the timing of seed rain is not determined by the climate conditions in the same period, while the density of seed rain may be affected by the disturbances of weather variations at a finer temporal resolution.     

Assessment of candidate plant DNA barcodes using the Rutaceae family

DNA barcoding is a rapidly developing frontier technology that is gaining worldwide attention.Here,seven regions (psbA-trnH,matK,ycf5,rpoC1,rbcL,ITS2,and ITS) with potential for use as DNA barcodes were tested for their ability to identify 300 samples of 192 species from 72 genera of the family Rutaceae.To evaluate each barcode’s utility for species authentication,PCR amplification efficiency,genetic divergence,and barcoding gaps were assessed.We found that the ITS2 region exhibited the highest inter-specific divergence,and that this was significantly higher than the intra-specific variation in the "DNA barcoding gap" assessment and Wilcoxon two-sample tests.The ITS2 locus had the highest identification efficiency among all tested regions.In a previous study,we found that ITS2 was able to discriminate a wide range of plant taxa,and here we confirmed that ITS2 was also able to discriminate a number of closely related species.Therefore,we propose that ITS2 is a promising candidate barcode for plant species identification.     

Community Dynamics of Seed Rain in Mixed Evergreen Broad-leaved and Deciduous Forests in a Subtropical Mountain of Central China

Seed dispersal is a key process within community dynamics.The spatial and temporal variations of seed dispersal andthe interspecific differences are crucial for understanding species coexistence and community dynamics.This might alsohold for the mixed evergreen broadleaved and deciduous forests in the mountains of subtropical China,but until now littleexisting knowledge is available for this question.In 2001,we chose to monitor the seed rain process of our mixed evergreenbroad-leaved and deciduous forest communities in Mount Dalaoling National Forest Park,Yichang,Hubei Province,China.The preliminary analyses show obvious variations in seed rain density,species compositions and timing of seed rain amongfour communities.The average seed rain densities of the four communities are 2.43±5.15,54.13±182.75,10.05±19.30and 24.91±58.86 inds./m~2,respectively;about one tenth the values in other studies in subtropical forests of China.In eachcommunity,the seed production is dominated by a limited number of species,and the contributions from the others aregenerally minor.Fecundity of evergreen broadleaved tree species is weaker than deciduous species.The seed rain of fourcommunities begins earlier than September,and stops before December,peaking from early September to late October.The beginning date,ending date and peak times of seed rain are extensively varied among the species,indicating differenttypes of dispersal strategies.According to the existing data,the timing of seed rain is not determined by the climateconditions in the same period,while the density of seed rain may be affected by the disturbances of weather variations ata finer temporal resolution.     

Special Issue on ＂Metagenomics of Marine Environments＂

We are pleased to announce a special issue on ＂Metagenomics of Marine Environments＂ of the journal Genomics, Proteomics ＆ Bioinformatics （GPB）, aiming to provide a platform for high-quality papers focusing on the topic and we invite submissions for this special issue （to be published in August of 2015）.
With most microbes being difficult or impossible to culture, metagenomic approaches based on culture- independent genomic sequencing provide the first real insight of the magnitude and diversity of microbial life that remains largely uncharted. The first metagenomic study of surface water of the Sargasso Sea revealed roughly 1800 species of microbes found in these samples, with 150 new bacterial species and over 1.2 million new genes. The astounding number of genes found in these samples suggests that microbial life in the ocean is far more abundant and diverse than one would expect.     

Global comparisons of beta diversity among mammals, birds, reptiles, and amphibians across spatial scales and taxonomic ranks

Beta diversity is the change in species composition among areas in a geographic region. The proportion of species shared between two areas often decreases when the distance separating them increases, leading to an increase in beta diversity. This study compares beta diversity among four classes of terrestrial vertebrates （mammals, birds, reptiles, and amphibians） at both regional （biogeographic realm） and global extents, using the same sets of faunal sample units for all four groups in each comparison. Beta diversity is lower for the two endothermic taxa （birds and mammals） than for the two ectothermic taxa （reptiles and amphibians） in all six biogeographic realms examined. When the four taxa in the six biogeographic realms are combined, beta diversity at the species rank is higher than that of the genus rank by a factor of 1.24, and is higher than that of the family rank by a factor of 1.85. The ratio of beta diversity at the genus rank to that at the family rank is 1.50. Beta diversity is slightly higher for ecoregions of 5000-99,999 km^2 than for ecoregions of 100,000-5,000,000 km^2.     

Conservation needs of amphibians in China: A review

The conservation status of all the amphibians in China is analyzed,and the country is shown to be a global priority for conservation in comparison to many other countries of the world.Three Chinese regions are particularly rich in amphibian diversity:Hengduan,Nanling,and Wuyi mountains.Sala-manders are more threatened than frogs and toads.Several smaller families show a high propensity to become seriously threatened:Bombinatoridae,Cryptobranchidae,Hynobiidae and Salamandridae.Like other parts of the world,stream-breeding,high-elevation forest amphibians have a much higher likeli-hood of being seriously threatened.Habitat loss,pollution,and over-harvesting are the most serious threats to Chinese amphibians.Over-harvesting is a less pervasive threat than habitat loss,but it is more likely to drive a species into rapid decline.Five conservation challenges are mentioned with recommendations for the highest priority research and conservation actions.     

Plastid Signals and the Bundle Sheath： Mesophyll Development in Reticulate Mutants

The development of a plant leaf is a meticulously orchestrated sequence of events producing a complex organ comprising diverse cell types. The reticulate class of leaf variegation mutants displays contrasting pigmentation between veins and interveinal regions due to specific aberrations in the development of mesophyll cells. Thus, the reticulate mutants offer a potent tool to investigate cell-type-specific developmental processes. The discovery that most mutants are affected in plastid-localized, metabolic pathways that are strongly expressed in vasculature-associated tis- sues implicates a crucial role for the bundle sheath and their chloroplasts in proper development of the mesophyll cells. Here, we review the reticulate mutants and their phenotypic characteristics, with a focus on those in Arabidopsis thali- ana. Two alternative models have been put forward to explain the relationship between plastid metabolism and meso- phyll cell development, which we call here the supply and the signaling hypotheses. We critically assess these proposed models and discuss their implications for leaf development and bundle sheath function in C3 species. The characteriza- tion of the reticulate mutants supports the significance of plastid retrograde signaling in cell development and highlights the significance of the bundle sheath in C3 photosynthesis.     

Cytological study on the genus Syncalathium （Asteraceae-Lactuceae）, an endemic taxon to alpine scree of the Sino-Himalayas

Cytological characters of four species in Syncalathium （Asteraceae： Lactuceae）, a small genus with six identified species endemic to alpine scree of the Sino-Himalayan region, are surveyed in this report. Three species （Syncalathiumpilosum, Syncalathium chrysocephalum, and Syncalathium disciforme） are examined for the first time. Combined with our previous counts, five species have been cytologically investigated from the genus and the results indicated that all species are diploid with the basic somatic chromosome number of x=8. The karyotype asymmetry of Syncalathium souliei is 2A, distinct from the other four species of 1A, and the remaining species are divided into two subgroups with different karyotypes, consistent with their morphological features. The significance of the cytological evolution of Syncalathium is briefly discussed.     

垂花粉口兰，缅甸兰科一新种

Pachystoma is a small orchid genus of some four species ranging from India and southern China through Indochina, Malaysia and Indonesia to the Philippines, New Guinea and Caledonia. The type specimen of this new species was found in the herbarium of the Royal Botanic Garden, Edinburgh (E) mixed with unidentified specimens of Eulophia during the senior author's visit there late in June of 2001. Many specimens of Pachystoma, as well as some of Eulophia, lack leaves probably due to the similarity of their leaves to those of some kinds of sympatric grasses, such as Imperata, and therefore being overlooked (Schlechter 1914), or the absence of leaves during the period of flowering. In these cases, some species of Pachystoma were said to be saprophytic, and others misidentified as belonging to Eulophia.Acknowlegment The senior author wants to express his sincere thanks to the Kadoorie Farm & Botanic Garden for a grant to visit and study the orchid collections in European herbaria, to the curators of E for making the specimens available, to Dr. Y. Z. Wang for his kind help, and to Mrs. Cai Su-qing for preparing the drawing of this new species.     

Establishment of trophic continuum in the food web of the Yellow Sea and East China Sea ecosystem: Insight from carbon and nitrogen stable isotopes

The determination of trophic level for the biology in a marine ecosystem is very important as alteration of its structure and function may be reflected in the tro-phic level of component species. A change in trophic level indicates variation in an organism’s feeding bi-ology or in the pathway of energy flow from primary producers to the consumer. The gut content analysis is a traditional method for studying trophodynamics of food web in marine ecosystems. Species composition and amounts in al…     

New species of the isolated Psaroniaceous rachis from the Early Permian in China

A new kind of marattialean raches are reported from the coal balls in Coal Seam No.7 in the upper part of the Taiyuan Formation （early Early Permian） from Taiyuan, Shanxi, China and are assigned to the genus Stipitopteris Grand＇Eury （Psaroniaceae）. The present specimens are different from all six reported species of the genus, and are therefore proposed as a new species： Stipitopteris shanxiensis. The raches of the new species are generally dorsi-ventrally flattened. The main raches usually exhibit scales of different forms on their surface. Beneath the epidermis is a zone of parenchymatous cells, some of which contain tannin-like contents. Inside this is a zone of small sclerenchymatous cells. Inward are the ground tissue and vascular bundles. The vascular bundles are continuous and are in two circles： the outer circle assumes a transversely elliptical shape with the gap and pinna trace, and the inner circle assumes a shallow C.shape with inrolled ends. The ground tissue located at the inner side of the vascular bundle is composed of thicker-walled parenchymatous cells. The cells of the ground tissue are vertically elongated in longitudinal sections. Subordered raches are smaller and have simpler structures than the main raches. The parenchyma zone beneath the epidermis is thinner, usually one to two cells wide and the sclerenchyma zone is usually absent. The scales are poorly developed and there is only one C-shaped vascular bundle. The new species is comparable to the crosiers of Psaroniaceae of the Euramerican Flora in some aspects, for example, it has a dorsi-ventrally flattened rachis and scales on the surface of the rachis. However, the other features and the preservative conditions of the present specimens indicate that they are not crosiers, but fully developed or mature raches. The new species is the first well-studied anatomically-preserved rachis of Psaroniaceae from the Cathaysian Flora and bears significance not only in understanding the anatomy and taxonomy of Psaroniaceae in the Cathaysian Flora, but also in the relationship between the Euramerican Flora and the Cathaysian Flora.