Different patterns of biomass allocation of mature and sapling host tree in response to liana competition in the southern temperate rainforest

Lianas can negatively affect their host tree. The evidence comes from studies in tropical forests, where lianas decrease the growth rate and reproduction of their host tree. This is primarily a consequence of water and nutrient competition, two limiting factors in tropical forests. In contrast, for some areas of southern temperate rainforests the competition for these resources could be less severe, because of the high rainfall and fertile soils. But so far, no study has determined the effect of liana competition over their host tree in southern temperate rainforests. The aim of this study was to evaluate, in field conditions, the effect of liana Cissus striata (Ruiz & Pavon) competition over the growth rate of mature Nothofagus obliqua (Bidr Egefam) host tree. In an experimental approach, we determined whether above‐ and/or below‐ground competition is more important in this interaction. We also looked for compensatory strategies that would allow to trees to respond to liana competition. In field conditions, we found that infested trees have a decrease in their relative growth rate of 26% and a reduction of the leaf area index (LAI) of 20% compared with control trees. In the greenhouse experiment, we found that saplings were water stressed and that there was light competition. Neither competition for water nor light had a significant effect on the growth rate of infested saplings. This could be explained because saplings showed compensatory strategies in response to competition. These strategies were based in the biomass distribution between organs (leaf area, slenderness index) and within leaves (LMA). In conclusion, we found that C. striata has a negative effect over the growth of mature and sapling N. obliqua host trees. This was a consequence of above‐ground and below‐ground competition, but we cannot disentangle which type of competition is more important. Trees respond to liana competition, mature host trees change the canopy architecture and saplings allocate resource between and within organs, which allows them to optimize resource capture.     

Functional traits of lianas in an Australian lowland rainforest align with post‐disturbance rather than dry season advantage

Lianas are an important component of tropical forests; they alter tree mortality and recruitment and impact biogeochemical cycling. Recent evidence suggests that the abundance of lianas in tropical forests is increasing. To understand and predict the effect of lianas on ecosystem processes in tropical forests, it is important to understand the mechanisms through which they compete with trees. In this study, we investigated the functional traits of lianas and trees in a lowland tropical forest in northeast Queensland, Australia. The site is located at 16.1° south latitude and experiences significant seasonality in rainfall, with pronounced wet and dry seasons. It is also subject to relatively frequent disturbance by cyclones. We asked the question of whether the canopy liana community at this site would display functional traits consistent with a competitive advantage over trees in response to disturbance, or in response to dry season water stress. We found that traits that we considered indicative of a dry season advantage (xylem water δ¹⁸O as an indicator of rooting depth; leaf and stem tissue δ¹³C and instantaneous gas exchange as measures of water‐use efficiency) did not differ between canopy lianas and canopy trees. On the other hand, lianas differed from trees in traits that should confer an advantage in response to disturbance (low wood density; low leaf dry matter content; high leaf N concentration; high mass‐based photosynthetic rates). We conclude that the liana community at the study site expressed functional traits geared towards rapid resource acquisition and growth in response to disturbance, rather than outcompeting trees during periods of water stress. These results contribute to a body of literature which will be useful for parameterising a liana functional type in ecosystem models.     

Mesophyll cell‐sucking herbivores (Cicadellidae: Typhlocybinae) on rainforest trees in Papua New Guinea: local and regional diversity of a taxonomically unexplored guild

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Co‐occurrence is not evidence of ecological interactions

There is a rich amount of information in co‐occurrence (presence–absence) data that could be used to understand community assembly. This proposition first envisioned by Forbes (1907) and then Diamond (1975) prompted the development of numerous modelling approaches (e.g. null model analysis, co‐occurrence networks and, more recently, joint species distribution models). Both theory and experimental evidence support the idea that ecological interactions may affect co‐occurrence, but it remains unclear to what extent the signal of interaction can be captured in observational data. It is now time to step back from the statistical developments and critically assess whether co‐occurrence data are really a proxy for ecological interactions. In this paper, we present a series of arguments based on probability, sampling, food web and coexistence theories supporting that significant spatial associations between species (or lack thereof) is a poor proxy for ecological interactions. We discuss appropriate interpretations of co‐occurrence, along with potential avenues to extract as much information as possible from such data.     

Changes in function and temporal variation in a guild of gall‐parasitoids across a temperature gradient in Australian subtropical rainforest

Parasitoids play an important role in ecosystem functioning through their influence on herbivorous insect populations. Theoretical and experimental evidence suggest that increased species richness can enhance and stabilize ecosystem function. It is important to understand how richness‐driven functional relationships change across environmental gradients. We investigated how temperature affected the relationship between parasitoid richness and parasitism rate in a guild of gall‐parasitoids along an elevational gradient. We collected galls at 15 sites along five elevational gradients (between 762 m and 1145 m asl) on six occasions over a year. A total of 1902 insects, including 1593 parasitoids, were reared from 12 402 galls. Parasitism rate increased significantly with temperature on all sampling occasions, except December and February. We found a significant, positive richness–parasitism relationship. This relationship, however, was weaker at higher elevations which may be linked to decreased functional efficiency of parasitoids at lower temperatures. Temporal variability in parasitism rate and parasitoid richness were significantly related, regardless of temperature. A stable functional guild of this kind may provide a more reliable ecosystem service under environmental changes.     

Habitat fragmentation,EFN‐bearing trees and ant communities: Ecological cascades in Atlantic Forest of northeastern Brazil

Habitat fragmentation has a marked impact on the functional composition of tropical forest tree assemblages, and such change is likely to cascade through other trophic levels. Here, we investigate how habitat fragmentation affects extrafloral nectary (EFN)‐bearing plants and ant functional groups known to attend EFNs in a fragmented landscape of the Atlantic Forest. Extrafloral nectary‐bearing trees were identified in 50 0.1‐ha plots located in forest fragments, edge and interior patches. Ants were surveyed in 30 1‐m² litter samples in each of 17 forest fragments and in forest interior. Extrafloral nectary‐bearing plants accounted for 19.9% of individuals and 10.5% of species and included both pioneer and shade‐tolerant species similarly rich in the three habitat types. However, shade‐tolerant individuals accounted for >80% of EFN‐bearing plants in forest interior, compared with 2% in forest edge and 29% in fragments. Forest edge and fragment plots had a third fewer EFN‐bearing individuals and species compared with forest interior. This appeared to have important implications for local ant communities as the density of EFN‐bearing trees was the most important variable explaining the species richness of arboreal dominant ants. Our results show that plant loser–winner replacements promoted by forest fragmentation can cascade through higher trophic levels, with implications for forest dynamics and biodiversity conservation.     

Coupling of canopy and understory food webs by ground‐dwelling predators

Understanding food‐web dynamics requires knowing whether species assemblages are compartmentalized into distinct energy channels, and, if so, how these channels are structured in space. We used isotopic analyses to reconstruct the food web of a Kenyan wooded grassland. Insect prey were relatively specialized consumers of either C₃ (trees and shrubs) or C₄ (grasses) plants. Arboreal predators (arthropods and geckos) were also specialized, deriving c. 90% of their diet from C₃‐feeding prey. In contrast, ground‐dwelling predators preyed considerably upon both C₃‐ and C₄‐feeding prey. This asymmetry suggests a gravity‐driven subsidy of the terrestrial predator community, whereby tree‐dwelling prey fall and are consumed by ground‐dwelling predators. Thus, predators in general couple the C₃ and C₄ components of this food web, but ground‐dwelling predators perform this ecosystem function more effectively than tree‐dwelling ones. Although prey subsidies in vertically structured terrestrial habitats have received little attention, they are likely to be common and important to food‐web organization.     

Assessing the above‐ground biomass of a complex tropical rainforest using a canopy crane

Abstract Current estimates of the total biomass in tropical rainforests vary considerably; this is due in large part to the different approaches that are used to calculate biomass. In this study we have used a canopy crane to measure the tree architectures in a 1 ha plot of complex mesophyll vine forest at Cape Tribulation, Australia. Methods were developed to measure and calculate the crown and stem biomass of six major species of tree and palm (Alstonia scholaris (Apocynaceae), Cleistanthus myrianthus (Euphorbiaceae), Endiandra microneura (Lauraceae), Myristica insipida (Myristicaceae), Acmena graveolens (Myrtaceae), Normanbya normanbyi (Arecaceae)) using the unique access provided by the crane. This has allowed the first non‐destructive biomass estimate to be carried out for a forest of this type. Allometric equations which relate tree biomass to the measured variable ‘diameter at breast height’ were developed for the six species, and a general equation was also developed for trees on the plot. The general equation was similar in form to equations developed for tropical rainforests in Brazil and New Guinea. The species equations were applied at the level of families, the generalized equation was applied to the remaining species which allowed the biomass of a total of 680 trees to be calculated. This has provided a current estimate of 270 t ha⁻¹ above‐ground biomass at the Australian Canopy Crane site; a value comparable to lowland rainforests in Panama and French Guiana. Using the same tree database seven alternative allometric equations (literature equations for tropical rainforests) were used to calculate the site biomass, the range was large (252–446 t ha⁻¹) with only three equations providing estimates within 34 t ha⁻¹ (12.5%) of the site value. Our use of multiple species‐specific allometric equations has provided a site estimate only slightly larger (1%) than that obtained using allometric equations developed specifically for tropical wet rainforests. We have demonstrated that it is possible to non‐destructively measure the biomass in a complex forest using an on‐site canopy crane. In conjunction the development of crown maps and a detailed tree architecture database allows changes in forest structure to be followed quantitatively.     

Land‐use change outweighs projected effects of changing rainfall on tree cover in sub‐Saharan Africa

Global change will likely affect savanna and forest structure and distributions, with implications for diversity within both biomes. Few studies have examined the impacts of both expected precipitation and land use changes on vegetation structure in the future, despite their likely severity. Here, we modeled tree cover in sub‐Saharan Africa, as a proxy for vegetation structure and land cover change, using climatic, edaphic, and anthropic data (R² = 0.97). Projected tree cover for the year 2070, simulated using scenarios that include climate and land use projections, generally decreased, both in forest and savanna, although the directionality of changes varied locally. The main driver of tree cover changes was land use change; the effects of precipitation change were minor by comparison. Interestingly, carbon emissions mitigation via increasing biofuels production resulted in decreases in tree cover, more severe than scenarios with more intense precipitation change, especially within savannas. Evaluation of tree cover change against protected area extent at the WWF Ecoregion scale suggested areas of high biodiversity and ecosystem services concern. Those forests most vulnerable to large decreases in tree cover were also highly protected, potentially buffering the effects of global change. Meanwhile, savannas, especially where they immediately bordered forests (e.g. West and Central Africa), were characterized by a dearth of protected areas, making them highly vulnerable. Savanna must become an explicit policy priority in the face of climate and land use change if conservation and livelihoods are to remain viable into the next century.     

Adenosine‐A3 receptors in neutrophil microdomains promote the formation of bacteria‐tethering cytonemes

The A₃‐adenosine receptor (A₃AR) has recently emerged as a key regulator of neutrophil behaviour. Using a fluorescent A₃AR ligand, we show that A₃ARs aggregate in highly polarized immunomodulatory microdomains on human neutrophil membranes. In addition to regulating chemotaxis, A₃ARs promote the formation of filipodia‐like projections (cytonemes) that can extend up to 100 μm to tether and ‘reel in’ pathogens. Exposure to bacteria or an A₃AR agonist stimulates the formation of these projections and bacterial phagocytosis, whereas an A₃AR‐selective antagonist inhibits cytoneme formation. Our results shed new light on the behaviour of neutrophils and identify the A₃AR as a potential target for modulating their function.     

Importance of the interaction protein–protein of the CaM–PDE1A and CaM–MLCK complexes in the development of new anti‐CaM drugs

Protein–protein interactions play central roles in physiological and pathological processes. The bases of the mechanisms of drug action are relevant to the discovery of new therapeutic targets. This work focuses on understanding the interactions in protein–protein–ligands complexes, using proteins calmodulin (CaM), human calcium/calmodulin‐dependent 3′,5′‐cyclic nucleotide phosphodiesterase 1A active human (PDE1A), and myosin light chain kinase (MLCK) and ligands αII–spectrin peptide (αII–spec), and two inhibitors of CaM (chlorpromazine (CPZ) and malbrancheamide (MBC)). The interaction was monitored with a fluorescent biosensor of CaM (hCaM M124C–mBBr). The results showed changes in the affinity of CPZ and MBC depending on the CaM–protein complex under analysis. For the Ca²⁺–CaM, Ca²⁺–CaM–PDE1A, and Ca²⁺–CaM–MLCK complexes, CPZ apparent dissociation constants (K_ds) were 1.11, 0.28, and 0.55 μM, respectively; and for MBC K_ds were 1.43, 1.10, and 0.61 μM, respectively. In competition experiments the addition of calmodulin binding peptide 1 (αII–spec) to Ca²⁺–hCaM M124C–mBBr quenched the fluorescence (K_d = 2.55 ± 1.75 pM) and the later addition of MBC (up to 16 μM) did not affect the fluorescent signal. Instead, the additions of αII–spec to a preformed Ca²⁺–hCaM M124C–mBBr–MBC complex modified the fluorescent signal. However, MBC was able to displace the PDE1A and MLCK from its complex with Ca²⁺–CaM. In addition, docking studies were performed for all complexes with both ligands showing an excellent correlation with experimental data. These experiments may help to explain why in vivo many CaM drugs target prefer only a subset of the Ca²⁺–CaM regulated proteins and adds to the understanding of molecular interactions between protein complexes and small ligands. Copyright © 2013 John Wiley & Sons, Ltd.     

Ecology of an Improbable Association: The Pseudomyrmecine Plant‐ant Tetraponera tessmanni and the Myrmecophytic Liana Vitex thyrsiflora (Lamiaceae) in Cameroon1

In young individuals of the obligate myrmecophytic liana Vitex thyrsiflora, several species of ants and other arthropods compete for resources offered by the plant. In mature individuals, the only inhabitant is the ant species Tetraponera tessmanni, which is completely restricted to Vitex lianas as its sole host. Established colonies of this ant provide effective defense against herbivores. The association between V. thyrsiflora and T. tessmanni is unusual in two respects. First, the climbing life form is rare among myrmecophytes. Secondly, it is surprising that a pseudomyrmecine should be the obligate associate of a liana. Pseudomyrmecine plant‐ants often prune vegetation contacting their host plant. This behavior functions in part to protect against invasion of the host by ecologically dominant ants. In contrast, T. tessmanni does not prune and is associated with a plant whose success, and thus that of its resident ant colony, depends on contacts with many other plants. Several traits of V. thyrsiflora and T. tessmanni combine to make the colonization of host plants by potential competitors very difficult. These include behavioral and morphological filters restricting entrance into the plant and exploitation of the resources it can supply; plant anatomical organization that enables T. tessmanni workers to carry out all activities, except leaf patrolling, within a single, branched private nesting space within which all food resources offered by the plant are produced; and polygyny, permitting the colony to monopolize a large, rapidly growing and long‐lived territory.     

LuTHy: a double‐readout bioluminescence‐based two‐hybrid technology for quantitative mapping of protein–protein interactions in mammalian cells

Information on protein–protein interactions (PPIs) is of critical importance for studying complex biological systems and developing therapeutic strategies. Here, we present a double‐readout bioluminescence‐based two‐hybrid technology, termed LuTHy, which provides two quantitative scores in one experimental procedure when testing binary interactions. PPIs are first monitored in cells by quantification of bioluminescence resonance energy transfer (BRET) and, following cell lysis, are again quantitatively assessed by luminescence‐based co‐precipitation (LuC). The double‐readout procedure detects interactions with higher sensitivity than traditional single‐readout methods and is broadly applicable, for example, for detecting the effects of small molecules or disease‐causing mutations on PPIs. Applying LuTHy in a focused screen, we identified 42 interactions for the presynaptic chaperone CSPα, causative to adult‐onset neuronal ceroid lipofuscinosis (ANCL), a progressive neurodegenerative disease. Nearly 50% of PPIs were found to be affected when studying the effect of the disease‐causing missense mutations L115R and ?L116 in CSPα with LuTHy. Our study presents a robust, sensitive research tool with high utility for investigating the molecular mechanisms by which disease‐associated mutations impair protein activity in biological systems.     

Parasitoid phorid flies of leaf‐cutting ants are negatively affected by loss of forest cover

Habitat fragmentation can have a high impact on parasitoid–ant interactions. Phorid flies are among the most important groups of natural enemies of leaf‐cutting ants. We studied the effects of loss in forest cover upon phorids of the leaf‐cutting ant Acromyrmex nigerSmith (Hymenoptera: Formicidae: Attini) in a fragmented area in the Southeastern Atlantic Forest, Brazil. We sampled 10 forest fragments, five large (>75 ha) and five small (<20 ha), as well as three areas of continuous forest (>1 000 ha). We marked 1–5 colonies of A. niger in the interior of each forest location. At each nest, we collected all of the phorids in interaction with the worker ants for a period of 15 min. We then collected ca. 200 worker ants, which we maintained in the laboratory for rearing phorids from them. We identified three phorid genera – Apocephalus, Myrmosicarius, and Neodohrniphora – which we both observed in the field and reared in the laboratory. The abundance and parasitism percentage were significantly greater in continuous forest sites than in forest fragments, whereas there were no significant differences between fragments of different sizes. These results provide further evidence for the effects of habitat size on the phorid‐Acromyrmex system in a tropical rain forest, based on the abundance of parasitoids both as adults in the field and as reared immature phorids in the laboratory.     

Sugar and amino acid composition of ant‐attended nectar and honeydew sources from an Australian rainforest

Abstract Ants (Hymenoptera: Formicidae) consume a broad spectrum of liquid food sources including nectar and honeydew, which play a key role in their diet especially in tropical forests. This study compares carbohydrates and amino acids from a representative spectrum of liquid sources used by ants in the canopy and understorey of a tropical rainforest in northern Queensland, Australia. Eighteen floral nectars, 16 extrafloral nectars, two wound sap and four homopteran honeydew sources were analysed using high performance liquid chromatography. Wounds comprised flower abscission scars on Normanbya normanbyi L. H. Bailey and bitemarks on Cardwellia sublimis F. Muell. where ants were actively involved in wounding. Discriminant analysis was performed to model differences between food sources in sugar and amino acid concentration and composition. All characteristics varied significantly among plant species. Honeydew contained a broader spectrum of sugars (including melezitose, raffinose, melibiose, lactose and maltose) than nectar (sucrose, glucose, fructose), but certain extrafloral nectars had similar amino acid profiles and, like honeydew sources, were often monopolized by ants. Most common amino acids across the sources were proline, alanine and threonine among 17 α‐amino acids identified. Interspecific variability concealed characteristic differences in sugar and amino acid parameters between nectar, honeydew and wound sap across all plants, but these types differed significantly when found on the same plant. Among all sources studied, only a few flower nectars were naturally not consumed by ants and they were significantly less attended than sugar controls in feeding trials. These nectars did not differ in sugars and amino acids from ant‐attended flower nectars, suggesting the activity of repellents. Apart from these exceptions, variability in amino acids and carbohydrates is proposed to play a key role in ant preferences and nutrition.     

Morphology of complexes formed between β‐lactoglobulin nanofibrils and pectins is influenced by the pH and structural characteristics of the pectins

For the optimal use of β‐lactoglobulin nanofibrils as a raw material in biological composites an in‐depth knowledge of their interactions with other constituents is necessary. To understand the effect of electrostatic interactions on the morphology of resulting complexes, β‐lactoglobulin nanofibrils were allowed to interact with pectins in which the amount of available negative charge was controlled by selecting their degree of methylesterification. In this study, citrus pectins having different degrees of methylesterification (～48, 67, 86, and 97%) were selected and interacted with nanofibrils at pH 2 and pH 3, where they possess a net positive charge. Electrostatic complexes formed between β‐lactoglobulin nanofibrils and all pectin types, except for the sample having a degree of methylesterification of 97%. The morphology of these complexes, however, differed significantly with the degree of methylesterification of the pectin, its concentration, and the pH of the medium, revealing that distinct desired biological architectures can be attained relatively easily through manipulating the electrostatic interactions. Interestingly, the pectin with a degree of methylesterification of 86% was found to crosslink the β‐lactoglobulin nanofibrils into ordered ‘nanotapes’.     

Aromatic residues in RNase T stack with nucleobases to guide the sequence‐specific recognition and cleavage of nucleic acids

RNase T is a classical member of the DEDDh family of exonucleases with a unique sequence preference in that its 3′‐to‐5′ exonuclease activity is blocked by a 3′‐terminal dinucleotide CC in digesting both single‐stranded RNA and DNA. Our previous crystal structure analysis of RNase T‐DNA complexes show that four phenylalanine residues, F29, F77, F124, and F146, stack with the two 3′‐terminal nucleobases. To elucidate if the π–π stacking interactions between aromatic residues and nucleobases play a critical role in sequence‐specific protein–nucleic acid recognition, here we mutated two to four of the phenylalanine residues in RNase T to tryptophan (W mutants) and tyrosine (Y mutants). The Escherichia coli strains expressing either the W mutants or the Y mutants had slow growth phenotypes, suggesting that all of these mutants could not fully substitute the function of the wild‐type RNase T in vivo. DNA digestion assays revealed W mutants shared similar sequence specificity with wild‐type RNase T. However, the Y mutants exhibited altered sequence‐dependent activity, digesting ssDNA with both 3′‐end CC and GG sequences. Moreover, the W and Y mutants had reduced DNA‐binding activity and lower thermal stability as compared to wild‐type RNase T. Taken together, our results suggest that the four phenylalanine residues in RNase T not only play critical roles in sequence‐specific recognition, but also in overall protein stability. Our results provide the first evidence showing that the π−π stacking interactions between nucleobases and protein aromatic residues may guide the sequence‐specific activity for DNA and RNA enzymes.     

Soil and vegetation features determine the nested pattern of ant–plant networks in a tropical rainforest

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Without management interventions,endemic wet‐sclerophyll forest is transitioning to rainforest in World Heritage listed K’gari (Fraser Island), Australia

Wet‐sclerophyll forests are unique ecosystems that can transition to dry‐sclerophyll forests or to rainforests. Understanding of the dynamics of these forests for conservation is limited. We evaluated the long‐term succession of wet‐sclerophyll forest on World Heritage listed K'gari (Fraser Island)—the world's largest sand island. We recorded the presence and growth of tree species in three 0.4 hectare plots that had been subjected to selective logging, fire, and cyclone disturbance over 65 years, from 1952 to 2017. Irrespective of disturbance regimes, which varied between plots, rainforest trees recruited at much faster rates than the dominant wet‐sclerophyll forest trees, narrowly endemic species Syncarpia hillii and more common Lophostemon confertus. Syncarpia hillii did not recruit at the plot with the least disturbance and recruited only in low numbers at plots with more prominent disturbance regimes in the ≥10 cm at breast height size. Lophostemon confertus recruited at all plots but in much lower numbers than rainforest trees. Only five L. confertus were detected in the smallest size class (<10 cm diameter) in the 2017 survey. Overall, we find evidence that more pronounced disturbance regimes than those that have occurred over the past 65 years may be required to conserve this wet‐sclerophyll forest, as without intervention, transition to rainforest is a likely trajectory. Fire and other management tools should therefore be explored, in collaboration with Indigenous landowners, to ensure conservation of this wet‐sclerophyll forest.