Causes and elimination of erratic blanks in enzymatic metabolite assays involving the use of NAD+ in alkaline hydrazine buffers: improved conditions for the assay of L-glutamate, L-lactate, and other metabolites.

In the alkaline hydrazine buffers frequently used for enzymatic metabolite assays, NAD⁺ undergoes reactions which give rise to products that absorb light at 340 nm. These “blank” reactions hinder accurate metabolite measurements. At least two reactions are involved, a very rapid one which results in a new absorbance band maximal at 316 nm and a slow one in which an absorbance band maximal at 342 nm develops over many hours. The first of these processes is strongly pH dependent and is responsible for the high initial absorbance of metabolite assay reaction mixtures. The second reaction, which is responsible for drifting endpoints in metabolite assays, appears to be potentiated by heavy metal ions and suppressed by EDTA. It is suggested that assays involving the use of NAD⁺ in hydrazine buffers should be carried out in the presence of high concentrations of EDTA and that the pH should not be higher than is absolutely necessary to ensure a quantitative assay. The standard assays for l-lactate and l-glutamate have been substantially improved by adopting these measures.     

Architecture of Iberian canopy tree species in relation to wood density,shade tolerance and climate

Tree architecture has important consequences for tree performance as it determines resource capture, mechanical stability and dominance over competitors. We analyzed architectural relationships between stem and crown dimensions for 13 dominant Iberian canopy tree species belonging to the Pinaceae (six Pinus species) and Fagaceae (six Quercus species and Fagus sylvatica) and related these architectural traits to wood density, shade tolerance and climatic factors. Fagaceae had, compared with Pinaceae, denser wood, saplings with wider crowns and adults with larger maximal crown size but smaller maximal height. In combination, these traits enhance light acquisition and persistence in shaded environments; thus, contributing to their shade tolerance. Pinaceae species, in contrast, had low-density wood, allocate more resources to the formation of the central trunk rather than to branches and attained taller maximal heights, allowing them to grow rapidly in height and compete for light following disturbances; thus, contributing to their high light requirements. Wood density had a strong relationship with tree architecture, with dense-wooded species having smaller maximum height and wider crowns, probably because of cheaper expansion costs for producing biomechanically stable branches. Species from arid environments had shorter stems and shallower crowns for a given stem diameter, probably to reduce hydraulic path length and assure water transport. Wood density is an important correlate of variation in tree architecture between species and the two dominant families, with potentially large implications for their resource foraging strategies and successional dynamics.     

Variability in spectral absorption within cryptophyte phycobiliprotein types

Cryptophytes are known to vary widely in coloration among species. These differences in color arise primarily from the presence of phycobiliprotein accessory pigments. There are nine defined cryptophyte phycobiliprotein (Cr-PBP) types, named for their wavelength of maximal absorbance. Because Cr-PBP type has traditionally been regarded as a categorical trait, there is a paucity of information about how spectral absorption characteristics of Cr-PBPs vary among species. We investigated variability in primary and secondary peak absorbance wavelengths and full width at half max (FWHM) values of spectra of Cr-PBPs extracted from 75 cryptophyte strains (55 species) grown under full spectrum irradiance. We show that there may be substantial differences in spectral shapes within Cr-PBP types, with Cr-Phycoerythrin (Cr-PE) 545 showing the greatest variability with two, possibly three, subtypes, while Cr-PE 566 spectra were the least variable, with only ±1 nm of variance around the mean absorbance maximum of 565 nm. We provide additional criteria for classification in cases where the wavelength of maximum absorbance alone is not definitive. Variations in spectral characteristics among strains containing the same presumed Cr-PBP type may indicate differing chromophore composition and/or the presence of more than one Cr-PBP in a single cryptophyte species.     

Interpretation and Optimization of Absorbance and Fluorescence Signals from Voltage-sensitive Dyes

Voltage-sensitive dyes produce absorbance and fluorescence changes that can be used to image voltage. The present study develops a systematic approach to the optimization of these signals. A mathematical analysis assesses the dye optical density (OD) that optimizes the signal-to-noise ratio in absorbance and fluorescence measurements. The signal-to-noise ratio is maximal for a dye OD of 2 (natural logarithm) in absorbance and ~1 in fluorescence. The fluorescence result is approximate because, in contrast to absorbance, the optimal dye OD varies with the amount of scattering and intrinsic absorbance of the tissue. The signal-to-noise ratio of absorbance is higher in thick preparations such as brain slices; fluorescence is superior in thin preparations such as cell culture. The optimal OD for absorbance and fluorescence, as well as the superiority of absorbance, were confirmed experimentally on hippocampal slices. This analysis also provided insight into the interpretation of signals normalized to resting light intensities. With both absorbance and fluorescence, the normalized signal (I/I) varies with OD, and does not reflect the change in dye absorbance. In absorbance this problem is remedied by dividing I/I by the dye OD to obtain the absorbance change. For fluorescence a correction is possible, but is more complicated. Because this analysis indicates that high levels of stain optimize the signal-to-noise, dyes were tested for pharmacological actions and phototoxicity. The absorbance dye RH155 was found to have pharmacological action at high staining levels. The fluorescent dye RH414 was phototoxic. Adverse effects could not be detected with the absorbance dye RH482.     

Colour vision in the passeriform bird,Leiothrix lutea: correlation of visual pigment absorbance and oil droplet transmission with spectral sensitivity

The visual receptors in the retina of the passeriform bird Leiothrix lutea were examined microspectro-photometrically. The rods had a maximum absorbance close to 500 nm. Four spectrally different classes of single cone were identified with typical combinations of photopigments and oil droplets: a long-wave sensitive cone with a photopigment P568 and a droplet with a cut-off wavelength at 564 nm, a middle-wave sensitive cone with a P499 and a droplet with a cut-off at 506 nm, a short-wave sensitive cone with a P454 and a droplet with maximum absorbance below 410nm and an ultraviolet sensitive cone with a P355 and a transparent droplet. Double cones possessed a P568 in both the principal and accessory members. A pale droplet with variable absorbance (maximal at about 420 nm) was associated with the principal member whereas the ellipsoid region of the accessory member contained only low concentrations of carotenoid. The effective spectral sensitivities of the different cone classes were calculated from the characteristic combinations of oil droplets and photopigments and corrected for the absorbance of the ocular media. Comparison of these results with the behavioural spectral sensitivity function of Leiothrix lutea suggests that the increment threshold photopic spectral sensitivity of this avian species is mediated by the 4 single cone classes modified by neural opponent mechanisms.Abbreviations LWS long wave sensitive - MWS middle wave sensitive - SWS short wave sensitive (cones)     

Bird diversity: a predictable function of satellite-derived estimates of seasonal variation in canopy light absorbance across the United States

Aim  To investigate the relationships between bird species richness derived from the North American Breeding Bird Survey and estimates of the average, minimum, and the seasonal variation in canopy light absorbance (the fraction of absorbed photosynthetically active radiation, fPAR) derived from NASA's Moderate Resolution Imaging Spectroradiometer (MODIS).
Location  Continental USA.
Methods  We describe and apply a 'dynamic habitat index' (DHI), which incorporates three components based on monthly measures of canopy light absorbance through the year. The three components are the annual sum, the minimum, and the seasonal variation in monthly fPAR, acquired at a spatial resolution of 1 km, over a 6-year period (2000–05). The capacity of these three DHI components to predict bird species richness across 84 defined ecoregions was assessed using regression models.
Results  Total bird species richness showed the highest correlation with the composite DHI [ R ² = 0.88, P  < 0.001, standard error of estimate (SE) = 8 species], followed by canopy nesters ( R ² = 0.79, P  < 0.001, SE = 3 species) and grassland species ( R ² = 0.74, P  < 0.001, SE = 1 species). Overall, the seasonal variation in fPAR, compared with the annual average fPAR, and its spatial variation across the landscape, were the components that accounted for most ( R ² = 0.55–0.88) of the observed variation in bird species richness.
Main conclusions  The strong relationship between the DHI and observed avian biodiversity suggests that seasonal and interannual variation in remotely sensed fPAR can provide an effective tool for predicting patterns of avian species richness at regional and broader scales, across the conterminous USA.     

Responses of photosystem I compared with photosystem II to high-light stress in tropical shade and sun leaves

Sun and shade leaves of several plant species from a neotropical forest were exposed to excessive light to evaluate the responses of photosystem I in comparison to those of photosystem II. Potential photosystem I activity was determined by means of the maximum P700 absorbance change around 810 nm (ΔA_810max) in saturating far-red light. Leaf absorbance changes in dependence of increasing far-red light fluence rates were used to calculate a ‘saturation constant’, K_s, representing the far-red irradiance at which half of the maximal absorbance change (ΔA_810max/2) was reached in the steady state. Photosystem II efficiency was assessed by measuring the ratio of variable to maximum chlorophyll fluorescence, F_v/F_m, in dark-adapted leaf samples. Strong illumination caused a high degree of photo-inhibition of photosystem II in all leaves, particularly in shade leaves. Exposure to 1800–2000 μ mol photons m⁻² s⁻¹ for 75 min did not substantially affect the potential activity of photosystem I in all species tested, but caused a more than 40-fold increase of K_s in shade leaves, and a three-fold increase of K_s in sun leaves. The increase in K_s was reversible during recovery under low light, and the recovery process was much faster in sun than in shade leaves. The novel effect of high-light stress on the light saturation of P700 oxidation described here may represent a complex reversible mechanism within photosystem I that regulates light-energy dissipation and thus protects photosystem I from photo-oxidative damage. Moreover, we show that under high-light stress a high proportion of P700 accumulates in the oxidized state, P700⁺. Presumably, conversion of excitation energy to heat by this cation radical may efficiently contribute to photoprotection.     

Can dual chlorophyll fluorescence excitation be used to assess the variation in the content of UV-absorbing phenolic compounds in leaves of temperate tree species along a light gradient?

The present study assesses light-induced variations in phenolic compounds in leaves of saplings of two co-occurring temperate species (Acer platanoides L., and Fraxinus excelsior L.) along a light gradient using a new non-invasive optical method (Dualex). The Dualex-derived UV absorbance of leaf epidermis (the sum of the adaxial and abaxial faces, AUV) increased significantly with increasing light in both species. AUV values were correlated with absorbance of the leaf extract at 305 nm and 375 nm (A305 and A375) in both species with similar slopes for both species. However, a large difference in intercept was observed between the two species when A305 was regressed against AUV. Similarly, AUV values were well correlated with the amount of phenolics in the leaf extracts assessed by the Folin-Ciocalteu method, but slopes were significantly different for the two species. Thus, the UV-A epidermal transmittance, despite being a reliable indicator of the UV-screening capacity of the leaf epidermis, cannot be used for any quantitative estimate of UV-B screening capacity or of energetic requirement for leaf construction without a species-specific calibration.     

Protochlorophyllide oxidoreductase: "dark" reactions of a light-driven enzyme

The light-driven enzyme NADPH:protochlorophyllide oxidoreductase (POR) catalyzes the reduction of protochlorophyllide (Pchlide) to chlorophyllide (Chlide), a key regulatory step in the chlorophyll biosynthesis pathway. As POR is light activated, it allows intermediates in the reaction pathway to be observed by initiating catalysis with illumination at low temperatures, a technique that has recently been used to study the initial photochemistry. Here, we use low-temperature spectroscopy to show that the catalytic mechanism of POR involves two additional steps, which do not require light and have been termed the "dark" reactions. The first of these involves the conversion of the product of the initial light-driven reaction, a nonfluorescent radical species, into a new intermediate that has an absorbance maximum at 681 nm and a fluorescence peak at 684 nm. During the second dark step this species gradually blue shifts to yield the product, Chlide. The temperature dependence for each of these two processes was measured; the data revealed that these steps could only occur close to or above the "glass transition" temperature of proteins, suggesting that domain movements and/or reorganization of the protein are required for these stages of the catalytic mechanism.     

Effects of the phenotypic polarization state of human leukocytes on the optical absorbance spectrum

This study evaluated the optical absorbance spectrum of human monocytes, neutrophils and lymphocytes polarized, or not, to the inflammatory or immunoregulatory phenotypes. Peripheral human blood leukocytes were isolated and polarized (10 ng/mL) with LPS or IL-4 + LPS for 2 hours. After polarization, cells were washed and incubated for an additional 24 hours (monocytes and lymphocytes) or 12 hours (neutrophils). Next, cells were collected to evaluate the optical absorbance spectrum. The three types of leukocytes exhibited absorbance in the region from 450 to 900 nm, with greater absorbance at wavelengths lower than 570 nm. Lymphocytes had a second region of greater absorbance between 770 and 900 nm. Inflammatory monocytes and lymphocytes showed increased absorbance of blue, green and yellow wavelengths (monocytes), as well as red and infrared wavelengths (monocytes and lymphocytes). Immunoregulatory polarization altered the absorbance of monocytes and lymphocytes very little. Neutrophils treated with LPS or LPS + IL-4 exhibited lower absorbance at wavelengths higher than 575 nm compared to untreated cells. The present findings showed that leukocytes exhibit greater absorbance in regions of the spectrum that have not been much used in photobiomodulation (PBM), and the polarization of these cells can affect their capacity to absorb light. Taken together, these results suggest new perspectives in the use of PBM in the clinical setting depending on the wavelengths and the stage of the inflammatory process.     

Natural selection on light response curve parameters in the herbaceous annual, <Emphasis Type="Italic">Impatiens capensis</Emphasis>

We tested for genetic variation in light response curves and their acclimation to sun versus shade in recombinant inbred lines (RILs) of the annual species Impatiens capensis derived from a cross between sun and shade populations. We exposed replicates of 49 RILs to experimentally manipulated light levels (open versus shade) in a greenhouse and measured photosynthetic light response curves, height, biomass, and reproduction. Plants were taller in the shade treatment, but we were unable to detect differences between light treatments (i.e., acclimation) in the maximal rate of photosynthesis, the light compensation point, or the quantum efficiency of photosynthesis. Genotypic selection analyses indicated that higher maximal rates of carbon assimilation and higher light compensation points (typical of sun-acclimated light curves) were favored by natural selection in both light treatments. Thus, it appears that the pattern of selection on photosynthetic parameters may not depend on light environment in this species.M. Shane Heschel and John R. Stinchcombe contributed equally to the paper.     

Moderate heat stress of <Emphasis Type="Italic">Arabidopsis thaliana</Emphasis> leaves causes chloroplast swelling and plastoglobule formation

Photosynthesis is inhibited by heat stress. This inhibition is rapidly reversible when heat stress is moderate but irreversible at higher temperature. Absorbance changes can be used to detect a variety of biophysical parameters in intact leaves. We found that moderate heat stress caused a large reduction of the apparent absorbance of green light in light-adapted, intact Arabidopsis thaliana leaves. Three mechanisms that can affect green light absorbance of leaves, namely, zeaxanthin accumulation (absorbance peak at 505 nm), the electrochromic shift (ECS) of carotenoid absorption spectra (peak at 518 nm), and light scattering (peak at 535 nm) were investigated. The change of green light absorbance caused by heat treatment was not caused by changes of zeaxanthin content nor by the ECS. The formation of non-photochemical quenching (NPQ), chloroplast movements, and chloroplast swelling and shrinkage can all affect light scattering inside leaves. The formation of NPQ under high temperature was not well correlated with the heat-induced absorbance change, and light microscopy revealed no appreciable changes of chloroplast location because of heat treatment. Transmission electron microscopy results showed swollen chloroplasts and increased number of plastoglobules in heat-treated leaves, indicating that the structural changes of chloroplasts and thylakoids are significant results of moderate heat stress and may explain the reduced apparent absorbance of green light under moderately high temperature.     

Phycochrome d, a New Photochromic Pigment from the Blue-Green Alga, Tolypothrix distorta

A new reversibly photochromic pigment, phycochrome d, has been found in extracts of the blue-green alga Tolypothrix distorta. This phycochrome exhibits an absorbance increase in the red region (maximum at about 650 nm) when irradiated with 650 nm light, and a corresponding absorbance decrease when irradiated with 610 nm light. The absorbance difference spectrum and action spectra for in vitro conversions were determined.     

Increased accuracy and speed of absorption cytometric DNA measurements by automatic corrections for nuclear darkness

We have developed a method of calculating the average local absorbance (ALA) of a nucleus from the integrated nuclear absorbance and area. One can use the ALA, along with nuclear areas measured at different point absorbance thresholds, to determine whether a nucleus is stained too lightly or too darkly for accurate absorption measurements; this allows selection of an optimal light wavelength for the performance of these measurements. The ALA can also be used for automatic and instantaneous correction of integrated absorbance values from darkly stained cells. This allows the rapid measurement of the integrated absorbances of a large number of nuclei that are heterogeneous in stain intensity. Coefficients of variation of approximately 3% are obtained for the integrated absorbances of nuclei of nontransformed G0/G1 cells. This correction method can be applied with any image densitometer that generates both integrated absorbance and area values.     

Photoisomerization of lycopene during carotenogenesis in mutant C-6D of Scenedesmus obliquus

Mutant C-6D of the unicellular green alga Scenedesmus obliquus has lost the ability to form cyclic carotenoids during heterotrophic growth in the dark. In the dark it accumulates acyclic intermediates, i.e. lycopene, neurosporene and ζ-carotene. The lycopene and two neurosporene forms were identified to be cis-isomers. Upon transfer to light, intermediates decrease and a normal set of carotenoids is synthesized. Inhibition of the cyclization reaction by nicotine reveals a lightinduced isomerization of cis-lycopene to trans-lycopene. Since the spectral characteristics of these two isomers differ drastically the isomerization can be followed in vivo by measuring a light-induced absorbance change. This absorbance change has its maximum at 520 nm and shows fast kinetics under high light intensities reaching a saturation level after about 2 min. Fluence-response curves for this absorbance change were performed for different wavelengths of actinic light. From the linear parts of these curves an action spectrum was caculated showing maxima at 670, 630 and 440 nm originating from chlorophyll and a maximum at shorter wavelengths (400–510 nm) which is interpreted to derive from ζ-carotene. A model for the light regulation of carotenogenesis in mutant C-6D is presented and the relation to the so-called 520-change observed in many plants is discussed.     

Temperature-dependent adjustment of the thermal stability of photosystem II in vivo: possible involvement of xanthophyll-cycle pigments

Moderately elevated temperatures induce a rapid increase in the heat and light resistance of photosystem II (PSII) in higher-plant leaves. This phenomenon was studied in intact potato leaves exposed to 35 °C for 2 h, using chlorophyll fluorometry, kinetic and difference spectrophotometry and photoacoustics. The 35 °C treatment was observed to cause energetic uncoupling between carotenoids and chlorophylls: (i) the steady-state chlorophyll fluorescence emission excited by a blue light beam (490 nm) was noticeably reduced as compared to fluorescence elicited by orange light (590 nm) and (ii) the quantum yield for photosynthetic oxygen evolution in blue light (400–500 nm) was preferentially reduced relative to the quantum yield measured in red light (590–710 nm). Analysis of the chlorophyll-fluorescence and light-absorption characteristics of the heated leaves showed numerous analogies with the fluorescence and absorption changes associated with the light-induced xanthophyll cycle activity, indicating that the carotenoid species involved in the heat-induced pigment uncoupling could be the xanthophyll violaxanthin. More precisely, the 35 °C treatment was observed to accelerate and amplify the non-photochemical quenching of chlorophyll fluorescence (in both moderate red light and strong white light) and to cause an increase in leaf absorbance in the blue-green spectral region near 520 nm, as do strong light treatments which induce the massive conversion of violaxanthin to zeaxanthin. Interestingly, short exposure of potato leaves to strong light also provoked a significant increase in the stability of PSII to heat stress. It was also observed that photosynthetic electron transport was considerably more inhibited by chilling temperatures in 35 °C-treated leaves than in untreated leaves. Further, pre-exposure of potato leaves to 35 °C markedly increased the amplitude and the rate of light-induced changes in leaf absorbance at 505 nm (indicative of xanthophyll cycle activity), suggesting the possibility that moderately elevated temperature increased the accessibility of violaxanthin to the membrane-located de-epoxidase. This was supported by the quantitative analysis of the xanthophyll-cycle pigments before and after the 35 °C treatment, showing light-independent accumulation of zeaxanthin during mild heat stress. Based on these results, we propose that the rapid adjustment of the heat resistance of PSII may involve a modification of the interaction between violaxanthin and the light-harvesting complexes of PSII. As a consequence, the thermoresistance of PSII could be enhanced either directly through a conformational change of PSII or indirectly via a carotenoid-dependent modulation of membrane lipid fluidity.Abbreviations and Symbols Fo and Fm initial and maximal level of chlorophyll fluorescence, respectively - Fv = Fm — Fo variable chlorophyll fluorescence - LHC(II) light-harvesting chlorophylla/b-protein complexes (of PSII) - photoacoustically measured quantum yield of photosynthetic oxygen evolution (in relative values) - _P fluorimetrically measured quantum yield of PSII photochemistry in the light - PFD photon flux density - q_E pH dependent quenching of chlorophyll fluorescence We thank Dr. J-L Montillet (CEA-Cadarache) for the use of his HPLC apparatus and Professor Y. Lemoine (University of Lille, France) for technical advice on HPLC.     

Light-induced chloroplast rearrangements and their action spectra as measured by absorption spectrophotometry

Summary A new combination technique of using both dual-wavelength and opalglas methods for scanning translucent biological samples was applied to leaves of terrestrial plants in order to observe their absorption changes by irradiation and the action spectra for the absorption changes. The measurements of true absorption, free from various effects of scattering, by this technique showed an increase of absorption by weak blue light and a decrease of absorption by strong blue light for almost all of the leaves of 20 plant species examined. These weak- and strong-light responses in absorption were reversible. The fractional increase and decrease of absorbance at 678 nm by weak and strong light were highest, +20% and -31%, for leaves of Begonia semperflorens Link et Otto, and +12% and -13% for leaves of foxtail, Setaria viridis (L.) Beauv., the species examined in further experiments. The response to strong light proceeded to completion earlier than did that to weak light. The strong-light response could be observed separately from the weak-light response by using a leaf pre-irradiated with weak blue light. The responses were measured as a function of light intensity by scanning a single leaf irradiated locally at different intensities, and the action spectra for these responses were measured by scanning a leaf irradiated locally at different wavelengths but at identical intensities. The action spectra for these opposite responses were similar, and showed a band at 450 nm with shoulders but no band in the red region. Microscopic observations of chloroplasts in leaves during irradiation indicated that these changes in absorption are mostly due to rearrangements of chloroplasts in cells caused by irradiation.     

Photoreaction of N560 intermediate in the photocycle of bacteriorhodopsin.

Sophisticated measurements were made on the nanosecond time-resolved absorbance change of the purple membrane of Halobacterium halobium under cw background light irradiation (440-800 nm, 11-441 mW/cm2). A red-shifted transient species R660 (KN, Q) was found in alkaline conditions (pH > 9.3). Background light intensity effect shows that (i) R660 is photochemically formed from N560 intermediate which is accumulated under background light irradiation because of the elongated lifetime in alkaline suspension, and that (ii) the slow decaying M412 is not photochemically formed from N560 but from bR568.     

Insect pupil mechanisms

Summary The spectral characteristics of the pupil mechanism in blowfly photoreceptors and their dependence on light intensity have been investigated together with the intensity dependence of the receptor potential. The threshold for the pupil response as measured by reflectance is found at an intensity at which the peak of the receptor potential is about half maximal and the plateau potential starts to saturate. The reflectance saturates at about 3 log-units above threshold. The reflectance spectrum peaks near 620 nm, and its shape is independent of adaptation intensity. The absorbance change, measured by transmission, is extreme in the blue, at about 470 nm. The shape of the absorbance spectrum is slightly intensity dependent, presumably due to optical waveguide effects. The dynamic ranges of the light-induced reflectance and absorbance changes do not coincide. The reflectance change shows saturation at least 1 to 1.5 log units before the absorbance change saturates.