Science as a Way of Knowing--Genetics

SYNOPSIS. This essay is part of the third presentation of aneducational project of the American Society of Zoologists. Thepurpose is to offer suggestions for improving the first-yearbiology courses in the universities. The method consists ofemphasizing the conceptual framework of the biological sciences,showing how scientific information is obtained and evaluated,pointing out the strengths and limitations of scientific procedures,and above all showing the relevance of science for human hopesand well being. This is done annually with a major symposium,an essay distributed at the symposium, a film program, and,finally, the published proceedings, which are widely distributedto scientistteachers throughout the world. Each year a majortopicis considered. In 1983 it was Evolutionary Biology andin 1984 it was Human Ecology. This year it is Genetics.     

Science as a Way of Knowing--Human Ecology

This essay is part of the second presentation of an educationalproject of the American Society of Zoologists. The purpose ofthe project is to offer suggestions for improving the first-yearbiology courses in the universities. The method consists ofemphasizing the conceptual framework of the biological sciences,showing how scientific information is obtained and evaluated,pointing out the strengths and limitations of scientific procedures,and above all showing the relevance of science for human hopesand welfare. Each year a major topic will be considered. Lastyear it was Evolutionary Biology. This year it is Human Ecology.     

Analysis of Form and Function in Fossils

SYNOPSIS. Paleontology and the fossil record contribute an historicalperspective on the form-function relationship that is essentialto an understanding of the particular range of biological formsand functions that exist in the living world. The record containsrich evidence of forms and functions that do not exist in themodern world and provides a context for exploring arenas oftheoretical possibility and impossibility for organisms. Althoughthe basic data of the fossil record are static forms and patternsin the rocks, paleontologists have developed methods of inferringfunction. Analogy is the most important source of hypothesesfor the function of extinct organisms and enigmatic structures.Paleontological analogy frequently extends beyond biologicalform and structure to engineering solutions in familiar simplemachines and a variety of other human artifacts. Three tools have proved especially useful in the analysis andinterpretation of form in fossils. The paradigm method is auseful procedure for rigorous evaluation of alternative functionalpossibilities for enigmatic structures in a predominantly adaptivecontext. Constructional morphology reaches beyond the adaptivecontext to provide a conceptual framework for understandingthe full range of factors that contribute to organic form. Theoreticalmorphology provides the basis for examining the range of formsand functions that have actually evolved against possible morphologicaland functional space. This essay is structured to provide applicationsof these paleontological tools and to encourage incorporationof paleontological data and perspective into instruction inintroductory biology courses.     

Structural characterization of glycosphingolipids from the eggs of Schistosoma mansoni and Schistosoma japonicum

The granulomatous pathology in human intestinal schistosomiasisis induced primarily by the egg antigens of schistosome, a parasitictrematode. Glycolipids and glycoproteins were extracted fromthe eggs of the two major species which infect human, Schistosomamansoni and Schistosoma japonicum, for structural characterizationbased on highly sensitive mass spectrometric analysis coupledwith chemical derivatization. Here, we demonstrate that a seriesof uniquely multifucosylated glycosphingolipids constitute themajor egg glycolipids of S.mansoni but not of S.japonicum. TheS.mansoni glycosphingolipids were found to be extended by varyingnumbers of an unusual repeating unit,     

Temperature Dependence of Plant and Crop Process

The quantitative effects of temperature on plant and crop processesare discussed and related to the underlying theory, by meansof a critical and expository essay which aims to provide a conceptualbasis for the consideration of these problems. The topics consideredinclude the Arrhenius equation and Q₁₀; the collision and transition-statetheories of the rate constant; models with a temperature optimum;models without a temperature optimum; phase changes; diffusion,viscosity and translocation; hybrid systems (biochemistry plustransport); photosynsthesis; respiration; and development withthe day-degree hypothesis. Temperature, model, plants, crops     

The Avian Shoulder: An Experimental Approach

SYNOPSIS. This essay is in two parts. The first describes functionalstudies of the shoulder in modern vertebrates that led to theformulation of the hypotheses that motor patterns of homologousmuscles have been maintained during the evolution of the tetrapodshoulder, and that a primitive organization of the neural controlcomponents has persisted in derived groups. The second part of this essay focuses upon a longstanding questionin vertebrate evolution: what neuromuscular and musculoskeletalchanges in the tetrapod shoulder accompanied the evolution offlight in birds? The lack of empirical data on shoulder functionin extant birds limited our insight into this question, andprompted our initiation of experimental studies. Preliminarykinematics of the furcula and humerus of European starlings(Sturnus vulgaris) flying in a wind tunnel, as revealed by highspeed cineradiography, are presented. The two halves of thefurcula, which contact the coracoids dorsally, are bent laterallyduring downstroke and medially during upstroke by as much as60% of the intrafurcular resting distance. High speed film andelectromyographic studies of freeflying pigeons (Columba livia)reveal that the supracoracoideus muscle is strongly activatedduring wing elevation and, as predicted from studies of Varanusand Didelphis, an additional activation burst occurs at mid-downstrokein 48% of the recordings.     

sgk: an essential convergence point for peptide and steroid hormone regulation of ENaC-mediated Na+ transport

To studythe role of sgk (serum, glucocorticoid-induced kinase) inhormonal regulation of Na⁺ transport mediated by theepithelial Na⁺ channel (ENaC), clonal cell lines stablyexpressing human sgk, an S422A sgk mutant, or aD222A sgk mutant were created in the background of the A6model renal epithelial cell line. Expression of normal sgkresults in a 3.5-fold enhancement of basal transport and potentiationof the natriferic response to antidiuretic hormone (ADH). Transfectionof a S422A mutant form of sgk, which cannot bephosphorylated by phosphatidylinositol-dependent kinase (PDK)-2, results in a cell line that is indistinguishable from the parent linein basal and hormone-stimulated Na⁺ transport. The D222Asgk mutant, which lacks kinase activity, functions as adominant-negative mutant inhibiting basal as well as peptide- andsteroid hormone-stimulated Na⁺ transport. Thussgk activity is necessary for ENaC-mediated Na⁺transport. Phosphorylation and activation by PDK-2 are necessary forsgk stimulation of ENaC. Expression of normal sgkover endogenous levels results in a potentiated natriferic response toADH, suggesting that the enzyme is a rate-limiting step for the hormoneresponse. In contrast, sgk does not appear to be therate-limiting step for the cellular response to aldosterone or insulin.

     

C21orf5, a New Member of Dopey Family Involved in Morphogenesis, Could Participate in Neurological Alterations and Mental Retardation in Down Syndrome

Availability of the human genome sequence promises importantprogress in the understanding of human pathologies, particularlyfor multifactorial diseases. Among these, Down syndrome (DS)is the most frequent genetic cause of mental retardation. Acritical region of chromosome 21, the Down syndrome ChromosomalRegion-1 (DCR-1), is responsible for many features of the DSphenotype including mental retardation. We studied DCR-1 C21orf5as a new candidate gene for DS considering its restricted expressionin key brain regions altered in DS patients and involved inlearning and memory processes. To elucidate C21orf5 molecularfunction, we performed a comparative study of protein sequencesin several species and showed that C21orf5 represents a newmember of the Dopey leucine zipper-like family. The C21orf5C-termini contains two highly conserved leucine-like zipperdomains in invertebrate and vertebrate species. Evolution analysisindicated a common ancestral origin of these protein sequencesalso suggesting a conserved function of this gene throughoutphylogenesis. Mutations of the known C21orf5 homologous genesAspergillus nidulans DopA, Saccharomyces cerevisiae Dop1 andCaenorhabditis elegans pad1, determine morphological abnormalities.We studied transgenic mice carrying the human C21orf5 gene andwe showed that this gene is overexpressed in brain regions byin situ hybridization and by real-time RT–PCR experiments.Interestingly, we also showed that these transgenic mice havean increased density of cortical cells overexpressing C21orf5.Similarly, DS patients have an altered lamination pattern intheir cortex. Considering together our and previous findings,we suggest that the human dopey family member, C21orf5, couldplay a role in brain morphogenesis and, when overexpressed,it could participate in neurological features and mental retardationobserved in DS patients.     

Human serum contains a chitinase: identification of an enzyme, formerly described as 4-methylumbelliferyl-tetra-N-acetylchitotetraoside hydrolase (MU-TACT hydrolase)

Since 1988 an endoglucosaminidase, provisionally named MU-TACThydrolase, has been known that hydrolyses the artificial substrate4-methylumbelliferyl-tetra-N-acetyl-chitotetraoside (MU-[GlcNAc]₄,where GlcNAc is N-acetyl-glucosamine). The biological functionof the enzyme was unknown. In this paper evidence is presentedshowing that this endoglucosaminidase from human serum is infact a chitinase that is different from lysozyme. The factssustaining this finding are: (i) the identification of the productsformed from MU-[GlcNAc]₃ as [GlcNAc]₂ and [GlcNAc]₃; (ii) chitinand ethylene glycolchitin can be degraded by the enzyme; (iii)the chitinase inhibitor allosamidin also inhibits the actionof MU-TACT hydrolase from human serum; (iv) no hydrolysis ofthe lysozyme substrate Micrococcus lysodeikticus. The enzymealso occurs in rat liver. It was demonstrated that upon Percolldensity gradient centrifugation the enzyme from this tissuedistributed parallel to the lysosomal marker enzymes ß-N-acetylhexosaminidaseand ß-galactosidase, indicating a lysosomal localizationfor this enzyme. It is proposed that the enzyme functions inthe hydrolysis of chitin, to which mammals are frequently exposedduring infection by pathogens. allosamidin chitinase human serum lysozyme MUTACT hydrolase     

Defective threonine-linked glycosylation of human insulin-like growth factor in mutants of the yeast Saccharomyces cerevisiae

Mutants of the yeast Saccharomyces cerevisiae were identified,in which O-glycosylation at threonine 29 of a heterologous protein,human insulin-like growth factor (hIGF-1), is defective. Inmutant M195, O-glycosylation of hIGF-1, but not of yeast proteinschitinase and a-agglutinin, was reduced; in mutant M577 yeastproteins were affected besides hIGF-1. The mutations of M195and M577 did not affect viability and could not be complementedby the PMT1 or PMT2 genes. The mutant phenorype of strain M195was reconstituted in an in vitro system, in which a hIGF-1-derivedpeptide encompassing residues 24–34 was not used as acceptorfor mannosylation, while unrelated peptides were glycosylatedat wild-type levels. hIGF-1 glycosylation was drastically reducedin pmt1 disruptants and to a lesser extent in pmt2 disruptants,suggesting interaction between the PMT gene products and componentsmutated in M195 and M577 cells. The results suggest that mutationsmay only affect O-glycosylation of a specific subset of secretedproteins in yeast. insulin-like growth factor O-glycosylation protein mannosyltransferase Saccharomyces cerevisiae     

Focused Microarray Analysis of Peripheral Mononuclear Blood Cells from Churg-Strauss Syndrome Patients

DNA diagnostics are useful but are hampered by difficult ethicalissues. Moreover, it cannot provide enough information on theenvironmental factors that are important for pathogenesis ofcertain diseases. However, this is not a problem for RNA diagnostics,which evaluate the expression of the gene in question. We herereport a novel RNA diagnostics tool that can be employed withperipheral blood mononuclear cells (PBMCs). To establish thistool, we identified 290 genes that are highly expressed in normalPBMCs but not in TIG-1, a normal human fibroblast cell. Thesegenes were entitled PREP after predominantly expressed in PBMCand included 50 uncharacterized genes. We then conducted PREPgene-focused microarray analysis on PBMCs from seven cases ofChurg–Strauss syndrome (CSS), which is a small-vesselnecrotizing vasculitis. We found that PREP135 (coactosin-likeprotein), PREP77 (prosaposin), PREP191 (cathepsin D), PREP234(c-fgr), and PREP136 (lysozyme) were very highly up-regulatedin all seven CSS patients. Another 28 genes were also up-regulated,albeit more moderately, and three were down-regulated in allCSS patients. The nature of these up- and down-regulated genessuggest that the immune systems of the patients are activatedin response to invading microorganisms. These observations indicatethat focused microarray analysis of PBMCs may be a practical,useful, and low-cost bedside diagnostics tool.     

Science as a Way of Knowing--VII: A Conceptual Framework for Biology Part III

This essay completes Science as a Way of Knowing, an educationalproject of the American Society of Zoologists and eleven cosponsoringorganizations. It is also the third part of my attempt to producea "Conceptual Framework for Biology." The discussion of Evolutioncontinues and is followed by Classification, Ecology, GeographicDistribution, Biology and Human Welfare, and the Nature of Science.The intended audience is those who teach the first-year biologycourses in colleges and universities as well as biology teachersin the precollege grades.     

Gap junction channel activity in short-term cultured human detrusor myocyte cell pairs: gating and unitary conductances

Several independent lines of investigation indicate that intercellular communication through gap junctions modulates bladder physiology and, moreover, that altered junctional communication may contribute to detrusor overactivity. However, as far as we are aware, there are still no direct recordings of gap junction-mediated intercellular currents between human or rat detrusor myocytes. Northern and Western blots were used to identify connexin expression in frozen human bladder tissue and short-term cultured human detrusor myocytes. Double whole cell patch (DWCP) recording revealed that human detrusor myocyte cell pairs were well coupled with an average junctional conductance of 6.5 ± 4.6 nS (ranging from 0.1 to 15 nS, n = 22 cell pairs). Macroscopic gap junction channel currents in human detrusor myocytes exhibited voltage dependence similar to homotypic connexin43. The normalized transjunctional conductance-voltage (G_j-V_j) relationship was symmetrical and well described by a two-state Boltzmann relation (G_min 0.33, V₀ = 63.6 mV, Z = 0.117 or equal to 2.95 gating charges), suggestive of a bilateral voltage-gated mechanism. In symmetric 165 mM CsCl, the measured single-channel slope conductance was 120 pS for the fully open channel and 26 pS for the major substate. Occasionally, other subconductance states were also observed. The single-channel mean open time declined with increasing V_j, accounting for the V_j-dependent decline of macroscopic junctional current. Qualitatively similar electrophysiological characteristics were observed in DWCP of freshly isolated rat detrusor myocytes. These data confirm and extend previous observations and are consistent with reports in other smooth muscle cells types in which Cx43-mediated intercellular communication has been identified. bladder function; intercellular communication; smooth muscle     

Mechanism and regulation of human intestinal niacin uptake

The mechanism of uptake of dietary niacin (nicotinic acid) by intestinal epithelial cells is not well understood, and nothing is known about regulation of the uptake process. In this investigation, we used human-derived intestinal epithelial Caco-2 cells and purified intestinal brush-border membrane vesicles (BBMVs) isolated from human organ donors to assess niacin uptake. Our findings show niacin uptake by Caco-2 cells to be 1) temperature and energy dependent; 2) Na⁺ independent, but highly dependent on extracellular acidic pH; 3) saturable as a function of concentration, with an apparent K_m of 0.53 ± 0.08 µM; 4) severely inhibited by the membrane-impermeable sulfhydryl group of reagents; and 5) highly specific for niacin but not affected by monocarboxylic acids. A marked trans stimulation in [³H]niacin efflux from preloaded Caco-2 cells by unlabeled niacin in the incubation buffer was also observed. These findings suggest the involvement of a specialized, pH-dependent, carrier-mediated mechanism for human intestinal niacin uptake. This suggestion was confirmed in studies with native human intestinal BBMVs. We also examined possible regulation of niacin uptake by Caco-2 cells via specific intracellular regulatory pathways. The results show that while the PKA-, PKC-, and Ca²⁺/calmodulin-mediated regulatory pathways play no role in regulating niacin uptake, a role for a protein tyrosine kinase (PTK)-mediated pathway is apparent. The results of these studies show for the first time the existence of a specialized, acidic pH-dependent, carrier-mediated system of niacin uptake by human intestinal epithelial cells that operates at the micromolar (physiological) range of niacin. The results also suggest the possible involvement of a PTK-mediated pathway in the regulation of niacin uptake. intestinal transport; transport mechanism; transport regulation     

Direct Determination of NotI Cleavage Sites in the Genomic DNA of Adult Mouse Kidney and Human Trophoblast Using Whole-Range Restriction Landmark Genomic Scanning

Restriction landmark genomic scanning (RLGS) is a method forvisualizing restriction landmarks, employing direct labelingof restriction sites of genomic DNA and high-resolution two-dimensionalelectrophoresis. We determined the conditions for both the firstand second dimensions of RLGS that define all of the restrictionfragments which carry the NotI landmark. Using this system,we determined the number of cleavable NotI sites of genomicDNA from the mouse kidney (C57BL/6) and from the human placenta.The mouse and human genomes were cleaved at 2,380±80sites (4,760±160 spots) and 3,240±110 sites (6,480±220spots), respectively with NotI.