The anatomy and grain pattern in forks of hazel (Corylus avellana L.) and other tree species

Key message

This paper provides a new anatomical model for how branches are joined together at forks in trees, using evidence from MicroXCT scanning, ESEM output and visual observation.

Abstract

Wood grain arrangements at the forks and other junctions within a tree must be arranged to mechanically join together the two or more branches, yet not adversely restrict sap flow. The grain orientation at junctions therefore represents a trade-off in xylem performance between the functions of efficient sap conductance and the provision of adequate load-bearing capacity. Initial observations of wood grain orientation were made on the surfaces of several dozen debarked and fractured bifurcations of a wide range of tree species, both by eye and using a scanning electron microscope. Subsequently, small volumes of wood were sampled from two locations within the junctions of hazel, at the junction apex and on the outer section of join. Wood was imaged in 3D using high-resolution X-ray tomography, and the scanned volumes were analysed for their wood grain patterns. It was found that the wood at the junctions of hazel forks contained only 37 % of the number of vessels contained in wood within the adjacent stem. The vessel elements formed at the junctions were only 32.5 % the length of those in the stem, had a mean diameter only 50.5 % of the stem vessels and consequently only 26.3 % of their lumen volume. The passage of the vessels through the fork wood deviated from a straight line (Euclidean) distance by more than 14 times more than the stem wood vessels did. The interweaving of vessels in the fork wood was over 22 times greater than in the stem wood. A survey of rays showed them to be 58 % more abundant in fork wood but only 62 % of the height of rays in the stem wood. These results suggest that where two branches of similar diameter join to form a tree fork, an interlocking wood grain pattern is formed at the apex of the bifurcation, which provides higher tensile strength to the junction. Breaking of the hazel fork requires wood fibres to be stretched axially and broken across, which requires greater stress than breaking normal wood radially or tangentially.     

Declining hydraulic performances and low carbon investments in tree rings predate Scots pine drought-induced mortality

Key message

The retrospective analysis of wood anatomical features evidences how a long-term deterioration of hydraulic performance and carbon use portend drought-induced mortality in Scots pine.

Abstract

Widespread episodes of drought-induced tree mortality are predicted to become more frequent as climate becomes warmer and drier. Nevertheless, growth trends and their links to changes in wood anatomy before tree dies are still poorly understood. Wood anatomical features provide valuable information that can be extracted to infer the mechanisms leading to tree death. In this study, we characterize drought-induced mortality affecting two Scots pine (Pinus sylvestris) sites (Prades and Arcalís) located in the North Eastern Iberian Peninsula. Co-occurring now-dead and living Scots pine trees were sampled and their wood anatomical features were measured and compared. We aimed to detect differences in anatomical features between living and dead trees, and to infer past physiological performances that might have determined their subsequent death or survival. Now-dead trees showed lower tracheid and resin duct production, and smaller radial lumen diameters than co-occurring living trees. At the more xeric Prades site, these anatomical differences were larger and chronic, i.e. were observed over the three studied decades, whilst they were less pronounced at the other, more mesic Arcalís site, where tree mortality episodes were more recent. This indicates that dead trees’ hydraulic conductivity was severely affected and that carbon investment in xylem formation and resin duct production was constrained prior to tree death. Our findings show that both hydraulic deterioration and low carbon allocation to xylem formation were associated to drought-induced mortality in Scots pine. Nevertheless, the temporal dynamics of these processes differed between populations as a function of site climatic conditions.     

Tree-ring wood anatomy and stable isotopes show structural and functional adjustments in olive trees under different water availability

Background and Aims

Olive tree (Olea europaea L.) is a drought-tolerant tree species cultivated in Mediterranean-type environments. Although it is tolerant to drought, dry conditions decrease its productivity. A thorough analysis of the hydraulic architecture and wood anatomical plasticity, as well as of their physiological significance, is needed to understand how olive trees will adapt to the predicted increase in frequency and severity of drought in the Mediterranean region.

Methods

Dendrochronological, stable isotopic (δ¹³C, δ¹⁸O) and wood anatomical analyses were applied to understand how different water availability can affect wood stem structure and function, in rainfed and irrigated at 100 % of crop evapotranspiration (ETc) olive trees in an experimental orchard close to Benevento (Italy) from 1992 to 2009.

Results

Dendrochronological data indicate that cross-dating and synchronization of ring-width time series in olive tree is possible. After the start of irrigation, significantly more negative δ¹³C and lower δ¹⁸O values were recorded in irrigated trees indicating higher stomatal conductance and transpiration rates. Increased water balance induced the formation of a higher number of vessels with higher diameter.

Conclusions

Water balance variations affected wood anatomy and isotopic composition. Anatomical analyses detected structural and functional adjustments in rainfed trees that produced more vessels with lower diameter to prevent cavitation. Isotopic analyses confirmed that irrigated trees continuously showed enhanced transpiration rates.     

The influence of stem guying on radial growth,stem form and internal resin features in radiata pine

Key message

Stem guying to prevent wind-induced swaying of radiata pine trees resulted in significant changes in radial growth, but did not affect the frequency of compression wood or resin features.

Abstract

Mechanical stress resulting from wind forces acting on trees can cause a number of direct and indirect effects ranging from microscopic changes in cambial activity through to stem breakage and uprooting. To better understand these effects on radial stem growth and wood properties, an experiment was established in a 13-year-old radiata pine (Pinus radiata D Don) stand in which 20 trees were guyed to prevent them from swaying. Radial growth was monitored in these trees and 20 matched controls at monthly intervals for 5 years. The trees were then felled and radial growth, resin features and compression wood were assessed on cross-sectional discs taken at fixed locations up the stem. There was a significant reduction in radial growth at breast height (1.4 m above the ground) in the guyed trees, but an increase in growth immediately above the guying point. A total of 277 resin features were observed in the growth rings formed following guying. The overall frequency of such features was related to height within the stem and annual ring number. No effect of stem guying was found on the incidence of compression wood. Interestingly, the distribution of resin features also did not differ between guyed and un-guyed trees. There was no evidence of a link between stem restraint as a result of guying and the incidence of resin features, suggesting that other factors, such as soil moisture may be more influential.     

Using life cycle thinking to analyze environmental labeling: the case of appearance wood products

Purpose

Growing public concern about the current state of our planet led to the creation of numerous regulations, standards, and certifications for the protection of humans and the environment. Ecolabels were defined for products such as cleaning products, paints, and many others. Wood building products are no exception. The objective of this study is to analyze the existing ecolabelling programs for appearance wood products in nonresidential applications and to evaluate them relatively to their effective role in environment protection or reduction of environment footprint.

Methods

The research was conducted on the most common International Organization for Standardization (ISO) type I ecolabels in North America, the European Union, and Japan. Certification schemes applicable to appearance wood products for nonresidential applications were considered. In a life cycle assessment perspective, certification criteria were compared regarding their ability to consider and integrate environment impacts.

Results and discussion

A wide range of ecolabels can apply to appearance wood products, from indoor air quality to wood from sustainable forest management. Moreover, it has been found that among all certification schemes studied, those integrating the whole life cycle were the most relevant.

Conclusions

The remaining limitation of ISO type I ecolabels is the lack of environmental information enabling the differentiation between products bearing the same ecolabel. This can be overcome by ISO type III environmental product declarations. Thus, allowing a better understanding of the implications related with the use of wood products compared to other materials in the nonresidential building sector.     

How does the root system inhibit windthrow in thinned black spruce sites in the boreal forest?

Key message

The root shape and the angle between roots play an important role to prevent windthrow occurrence.

Abstract

Partial cutting is frequently applied to increase the volume growth of residual stems. However, the opening of the forest increases the wind speed within the site, and consequently, the risk of windthrow. In the case of black spruce, uprooted trees are normally characterized by a lifting of the root plate. This research was conducted to compare the root systems of standing and uprooted black spruces, after commercial thinning, by looking at root architecture, volume and radial growth. For this purpose, data from a pool of 18 standing and 18 uprooted trees from three study areas were analyzed. The distribution of roots around the stump was compared between both types of trees, standing and uprooted. The radial growth was measured at 30 cm in the stem, 10 cm and 60 cm in the roots. The shape (I and T-beam) and volume were recorded for each root system. The structure of the roots was also mapped to obtain a spatial overview of the angle between roots. The root shape (at 10 and 60 cm) and the angle between roots combined with the diameter of the stem at stump height seem to determine the vulnerability of black spruce to windthrow. Uprooted trees developed fewer roots, with a large sector around the stump without lateral roots which suggests its major implication in the resistance to windthrow.     

Mechanosensing is involved in the regulation of autostress levels in tension wood

Key message

The level of stresses of tension wood changes during the gravitropic movement. These changes are induced by the perception of strains experienced by the tree during reorientation to the upright position.

Abstract

In most hardwood species, tension wood is produced to ensure tropic movements in radially growing organs. Tension wood exhibits internal tensional forces (autostresses) greater than those of normal wood, which enable the trunk to restore its verticality. During the gravitropic response, there is a first phase when the trunk curves upwards and a second phase when the trunk decurves to reach a final vertical and straight shape. Tension wood appears to be of varying strength, but the source of these variations remains partly undefined. We set out to assess the involvement of mechanosensing in the regulation of the strength of tension wood. Autostress levels characterise the strength of tension wood and can be indirectly estimated by measuring the associated residual longitudinal maturation strains (rlms) after the autostresses release. The higher the tension, the higher the measured associated shrinkage. To look for the involvement of mechanosensing in the regulation of tension wood strength, rlms were measured in different types of experiments in which the trunk mechanical state was modified. Results showed that (1) bigger trees exhibited higher levels of rlms, (2) there was a quantitative relationship between the rlms and the sum of strains experienced by the trunk, (3) artificial curving induced an increase in rlms and (4) in tilted staked trees, rlms increased towards negative values for 3 weeks and then remained constant. These findings are consistent evidence for the regulation of rlms values by mechanosensing. This brings new insight into gravitropism.     

Wood density and its radial variation in six canopy tree species differing in shade-tolerance in western Thailand

Background and Aims

Wood density is a key variable for understanding life history strategies in tropical trees. Differences in wood density and its radial variation were related to the shade-tolerance of six canopy tree species in seasonally dry tropical forest in Thailand. In addition, using tree ring measurements, the influence of tree size, age and annual increment on radial density gradients was analysed.

Methods

Wood density was determined from tree cores using X-ray densitometry. X-ray films were digitized and images were measured, resulting in a continuous density profile for each sample. Mixed models were then developed to analyse differences in average wood density and in radial gradients in density among the six tree species, as well as the effects of tree age, size and annual increment on radial increases in Melia azedarach.

Key Results

Average wood density generally reflected differences in shade-tolerance, varying by nearly a factor of two. Radial gradients occurred in all species, ranging from an increase of (approx. 70%) in the shade-intolerant Melia azedarach to a decrease of approx. 13% in the shade-tolerant Neolitsea obtusifolia, but the slopes of radial gradients were generally unrelated to shade-tolerance. For Melia azedarach, radial increases were most-parsimoniously explained by log-transformed tree age and annual increment rather than by tree size.

Conclusions

The results indicate that average wood density generally reflects differences in shade-tolerance in seasonally dry tropical forests; however, inferences based on wood density alone are potentially misleading for species with complex life histories. In addition, the findings suggest that a ‘whole-tree’ view of life history and biomechanics is important for understanding patterns of radial variation in wood density. Finally, accounting for wood density gradients is likely to improve the accuracy of estimates of stem biomass and carbon in tropical trees.Key words: Radial gradients, shade-tolerance, tree biomass estimates, tree rings, tropical trees, wood density     

Changes in N and C concentrations,soil acidity and P availability in tropical mixed acacia and eucalypt plantations on a nutrient-poor sandy soil

Background and aims

The introduction of Acacia mangium in Eucalyptus urophylla x grandis stands improves wood production on poor sandy soils of coastal plains of the Congo. We assessed the impact of A. mangium plantations in pure stands and in mixture with eucalypt trees on the physico-chemical properties of the soil after one rotation.

Methods

Bulk densities, N, C, available P and pH were determined on soil sampled in the pure acacia (100A), pure eucalypt (100E) and mixed-species (50A:50E) stands. N and P were determined in aboveground litters and in leaves, bark and wood of trees.

Results

N and C concentrations were higher in 50A:50E than in 100A and 100E in the top soil layer. The pH was lower in 100A and higher in 100E than in 50A:50E. The available P was lower in 50A:50E than in 100A and 100E. Leaf N was lower in 50A:50E than in 100A for acacia, and higher than in 100E for eucalypt. Leaf P was similar for acacia but higher for eucalypt in 50A:50E than in 100E. In contrast to P, the amount of N in aboveground litterfall increased with the proportion of acacia in the stand.

Conclusions

The introduction of acacia trees in eucalypt plantations increased C and N contents of the soil but decreased the available P content in the mixed-species stand. This may be related to a higher uptake of P needed to maintain the N:P stoichiometry in eucalypt leaves.     

Prognosis of iron chlorosis in pear (Pyrus communis L.) and peach (Prunus persica L. Batsch) trees using bud, flower and leaf mineral concentrations

Background and Aims

The possibility of using tree materials in early phenological stages, such as dormant buds and flowers, for the prognosis of Fe deficiency occurring later in the year has been studied in peach and pear trees.

Methods

Thirty-two peach trees and thirty pear trees with different Fe chlorosis degrees were sampled in different commercial orchards. In peach, samples included flower buds, vegetative buds, bud wood, flowers and leaves at 60 and 120?days after full bloom (DAFB). In pear, samples included buds, bud wood, flowers and leaves at 60 and 120?days DAFB. Leaf chlorophyll was assessed (SPAD) at 60 and 120 DAFB. Sampling was repeated for 3–5?years depending on the materials. Mineral nutrients measured were N, P, K, Ca, Mg, Fe, Mn, Zn and Cu.

Results

The relationships between the nutrient concentrations in the different materials and leaf SPAD were assessed using four different statistical approaches: i) comparison of means depending on the chlorosis level, ii) correlation analysis, iii) principal component analysis, and iv) stepwise multiple regression. In all cases, significant associations between nutrients and SPAD were found. The best-fit multiple regression curves obtained for the multi-year data set provided good prediction in individual years.

Conclusions

Results found indicate that it is possible to carry out the prognosis of Fe chlorosis using early materials such as buds and flowers. The relationships obtained were different from those obtained in previous studies using a single orchard. The different methods of analysis used provided complementary data.     

Wood Specific Gravity Variations and Biomass of Central African Tree Species: The Simple Choice of the Outer Wood

Context

Wood specific gravity is a key element in tropical forest ecology. It integrates many aspects of tree mechanical properties and functioning and is an important predictor of tree biomass. Wood specific gravity varies widely among and within species and also within individual trees. Notably, contrasted patterns of radial variation of wood specific gravity have been demonstrated and related to regeneration guilds (light demanding vs. shade-bearing). However, although being repeatedly invoked as a potential source of error when estimating the biomass of trees, both intraspecific and radial variations remain little studied. In this study we characterized detailed pith-to-bark wood specific gravity profiles among contrasted species prominently contributing to the biomass of the forest, i.e., the dominant species, and we quantified the consequences of such variations on the biomass.

Methods

Radial profiles of wood density at 8% moisture content were compiled for 14 dominant species in the Democratic Republic of Congo, adapting a unique 3D X-ray scanning technique at very high spatial resolution on core samples. Mean wood density estimates were validated by water displacement measurements. Wood density profiles were converted to wood specific gravity and linear mixed models were used to decompose the radial variance. Potential errors in biomass estimation were assessed by comparing the biomass estimated from the wood specific gravity measured from pith-to-bark profiles, from global repositories, and from partial information (outer wood or inner wood).

Results

Wood specific gravity profiles from pith-to-bark presented positive, neutral and negative trends. Positive trends mainly characterized light-demanding species, increasing up to 1.8 g.cm^-3 per meter for Piptadeniastrum africanum, and negative trends characterized shade-bearing species, decreasing up to 1 g.cm^-3 per meter for Strombosia pustulata. The linear mixed model showed the greater part of wood specific gravity variance was explained by species only (45%) followed by a redundant part between species and regeneration guilds (36%). Despite substantial variation in wood specific gravity profiles among species and regeneration guilds, we found that values from the outer wood were strongly correlated to values from the whole profile, without any significant bias. In addition, we found that wood specific gravity from the DRYAD global repository may strongly differ depending on the species (up to 40% for Dialium pachyphyllum).

Main Conclusion

Therefore, when estimating forest biomass in specific sites, we recommend the systematic collection of outer wood samples on dominant species. This should prevent the main errors in biomass estimations resulting from wood specific gravity and allow for the collection of new information to explore the intraspecific variation of mechanical properties of trees.     

WGDB: Wood Gene Database with search interface

Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits, fibre properties include the microfibril angle, density and stiffness in loblolly pine [1]. The user friendly and an open-access database has been developed named Wood Gene Database (WGDB) for describing the wood genes along the information of protein and published research articles. It contains 720 wood genes from species namely Pinus, Deodar, fast growing trees namely Poplar, Eucalyptus. WGDB designed to encompass the majority of publicly accessible genes codes for cellulose, hemicellulose and lignin in tree species which are responsive to wood formation and quality. It is an interactive platform for collecting, managing and searching the specific wood genes; it also enables the data mining relate to the genomic information specifically in Arabidopsis thaliana, Populus trichocarpa, Eucalyptus grandis, Pinus taeda, Pinus radiata, Cedrus deodara, Cedrus atlantica. For user convenience, this database is cross linked with public databases namely NCBI, EMBL & Dendrome with the search engine Google for making it more informative and provides bioinformatics tools named BLAST,COBALT.

Availability

The database is freely available on www.wgdb.in     

Unthinned slow-growing ponderosa pine (Pinus ponderosa) trees contain muted isotopic signals in tree rings as compared to thinned trees

Key message

The muted wood isotopic signal in slow-growing trees of unthinned stands indicates lower responsiveness to changing environmental conditions compared to fast-growing trees in thinned stands.

Abstract

To examine the physiological processes associated with higher growth rates after thinning, we analyzed the oxygen isotopic values in wood (δ¹⁸O_w) of 12 ponderosa pine (Pinus ponderosa) trees from control, moderately, and heavily thinned stands and compared them with wood-based estimates of carbon isotope discrimination (?¹³C), basal area increment (BAI), and gas exchange. We found that (heavy) thinning led to shifts and increased inter-annual variability of both stable carbon and oxygen isotope ratios relative to the control throughout the first post-thinning decade. Results of a sensitivity analysis suggested that both an increase in stomatal conductance (g _s) and differences in source water among treatments are equally probable causes of the δ¹⁸O_w shift in heavily thinned stands. We modeled inter-annual changes in δ¹⁸O_w of trees from all treatments using environmental and physiological data and found that the significant increase in δ¹⁸O_w inter-annual variance was related to greater δ¹⁸O_w responsiveness to changing environmental conditions for trees in thinned stands when compared to control stands. Based on model results, the more muted climatic response of wood isotopes in slow-growing control trees is likely to be the consequence of reduced carbon sink strength causing a higher degree of mixing of previously stored and fresh assimilates when compared to faster-growing trees in thinned stands. Alternatively, the muted response of δ¹⁸O_w to climatic variation of trees in the control stand may result from little variation in the control stand in physiological processes (photosynthesis, transpiration) that are known to affect δ¹⁸O_w.     

A model to simulate the gravitropic response and internal stresses in trees,considering the progressive maturation of wood

Key message

The developed model of gravitropism takes non-instantaneous maturation of wood into account which enabled to correctly simulate different gravitropic phases and realistic internal stress profiles.

Abstract

A new biomechanical model of tree movement in relation to gravity (gravitropism) is proposed in this study. The modelling of the progressive maturation of wood cells is taken into account, as well as spatio-temporal variations in maturation strains (MS) and mechanical properties. MS were identified using an inverse method that allows the model to fit the gravitropic reaction observed experimentally. For this purpose, the curvature during righting movement, the geometry and the mass distribution of a two-year-old poplar tree was measured. The identified MS are higher than expected, which shows the underestimation of MS by usual measurements. By using the same mechanical parameters and MS as an input, the model gives satisfying results in terms of shape modelling for different trees up to 32 days after tree tilting. The model is able to simulate the latency phase observed in the tree righting movement, and the internal stress profile in the trunk is realistic (low compressive value in the central part of the trunk and zero stress in newly formed cells). The next development of the model will aim to simulate the end of the gravitropic phase in relation with the regulation of MS by the tree.     

Investigation of organic anions in tree root exudates and rhizosphere microbial communities using in situ and destructive sampling techniques

Purpose

Understanding of the role of low molecular weight organic anions (OAs) in structuring rhizosphere microbial communities in situ is limited due to challenges associated with sampling. Improved techniques are needed for such studies.

Methods

This study used in situ and destructive sampling techniques and compared two exudate extraction methods [anion exchange membrane (AEM) capturing and water extraction] from rhizosphere and non-rhizosphere samples of genetically modified (GM) and control Pinus radiata D. Don trees grown in large-scale rhizotrons for ~10?months. Metabolically active soil microbial communities were analysed using rRNA-DGGE.

Results

Recovery of eight out of 12 anions was influenced by extraction methods, and in situ sampling using AEM was shown to be the most efficient method. Only minor differences were detected in OAs in root exudates collected from the GM and control trees. Significant differences in α-Proteobacterial and Pseudomonas communities were associated with the two tree lines in the topsoil at both sampling events. Additional differences in β-Proteobacterial and fungal communities between tree lines were detected in the rhizosphere using destructive sampling.

Conclusion

This study demonstrated that in situ sampling was superior to destructive sampling for the efficient collection of root exudates and analysis of associated rhizosphere microbial communities.     

A life cycle carbon dioxide inventory of the Million Trees Los Angeles program

Purpose

This study seeks to answer the question, “Will the Million Trees LA (Million Trees Los Angeles, MTLA) program be a carbon dioxide (CO₂) sink or source?” Because there has never been a full accounting of CO₂ emissions, it is unclear if urban tree planting initiatives (TPIs) are likely to be effective means for reaching local reduction targets.

Methods

Using surveys, interviews, field sampling, and computer simulation of tree growth and survival over a 40-year time period, we developed the first process-based life cycle inventory of CO₂ for a large TPI. CO₂ emissions and reductions from storage and avoided emissions from energy savings were simulated for 91,786 trees planted from 2006 to 2010, of which only 30,813 (33.6 %) were estimated to survive.

Results and discussion

The MTLA program was estimated to release 17,048 and 66,360 t of fossil and biogenic CO₂ over the 40-year period, respectively. The total amount emitted (83,408 t) was slightly more than the ?77,942 t CO₂ that trees were projected to store in their biomass. The MTLA program will be a CO₂ sink if projected 40-year-avoided fossil fuel CO₂ emissions from energy savings (?101,679 t) and biopower (?1,939 t) are realized. The largest sources of CO₂ emissions were mulch decomposition (65.1 %), wood combustion (14.5 %), and irrigation water (9.7 %).

Conclusions

Although trees planted by the MTLA program are likely to be a net CO₂ sink, there is ample opportunity to reduce emissions. Examples of these opportunities include selecting drought-tolerant trees and utilizing wood residue to generate electricity rather than producing mulch.     

The growth and nutrients status of conifers on ash-treated cutaway peatland

Key message

Use of wood ash or a mixture of wood and oil shale ashes increases the concentrations of P and K in the assimilation organs of conifers and stimulates tree growth.

Abstract

The effect of fertilization with wood ash (10 and 15 t ha^?1) and a mixture of wood ash (10 t ha^?1) and oil shale ash (8 t ha^?1) on the growth (height, root collar diameter, biomass, biomass production) and nutrient concentrations in subsoil and needles of young Pinus sylvestris and Picea abies plants on the Puhatu (Northeast Estonia) cutaway peatland in the first 2 years were studied. After the second growing year differences in the average height growth of P. abies and P. sylvestris were statistically significantly higher on ash-treated plots than on the control plots (p < 0.05), being respectively 1.4–1.6 and 1.5–1.7 times greater than height growth of the control trees. The best results on root collar diameter were observed on mixture ash treatments: the root collars were 1.9 (P. abies) and 2.2 (P. sylvestris) times larger than of the control trees. The biomass of the two conifer species and the biomass production of P. sylvestris in 2012 was the greatest on the mixture ash treatments. Five months after fertilization with ashes the concentrations of P, K, Ca and Mg were higher on the treated plots than on the control plot. Although the concentrations of P and K in P. sylvestris needles rose after the treatment with ash, seedlings suffered from P and K deficiency. The concentrations of P and K in P. abies needles were on optimum. The P/N and the K/N ratios in needles were also improved compared to control trees needles.     

Genetic parameters and provenance variation of Pinus radiata D. Don. ‘Eldridge collection’ in Australia 2: wood properties

Provenance variation and genetic parameters for wood properties of mature radiata pine (Pinus radiata D. Don) were studied by sampling three provenance/progeny trials in southeast Australia. Among the mainland provenances, Monterey and Año Nuevo had higher density and modulus of elasticity (at one site) than Cambria. Basic density and predicted modulus of elasticity (MoE) for the island provenances, Guadalupe and Cedros, were ～20% higher at Billapaloola compared to mainland provenances grown at Green Hills and Salicki, differences that may or may not be linked to site differences. Heritability estimates of density, predicted MoE and microfibril angle were significant and $ {\bar{h}^2} $ ?>?0.45, suggesting moderate to strong genetic control. The estimated genetic correlations between diameter at breast height and wood properties in the current study were weaker (less negative) than the mean estimated from the current breeding population generation in radiata pine. Of the wood properties, density showed the strongest adverse genetic correlations with growth (mean r _A ?=??0.23?±?0.09). Selection for MoE may produce greater gain than selection for density because MoE had almost twice the estimated additive genetic coefficient of variation ( $ {\overline {\text{CV}}_A} $ ) compared to density. Estimated type B genetic correlations (r _B) for all wood quality traits were typically high, conforming to the trend that wood properties have low genotype-by-environment interaction (G?×?E). Significant differences in wood properties among provenances, families and/or individual trees provide an opportunity for breeding programmes to select superior trees for solid wood production that will combine superior growth with desirable wood traits.     

Fast local fragment chaining using sum-of-pair gap costs

Background

When inferring phylogenetic trees different algorithms may give different trees. To study such effects a measure for the distance between two trees is useful. Quartet distance is one such measure, and is the number of quartet topologies that differ between two trees.

Results

We have derived a new algorithm for computing the quartet distance between a pair of general trees, i.e. trees where inner nodes can have any degree ≥ 3. The time and space complexity of our algorithm is sub-cubic in the number of leaves and does not depend on the degree of the inner nodes. This makes it the fastest algorithm so far for computing the quartet distance between general trees independent of the degree of the inner nodes.

Conclusions

We have implemented our algorithm and two of the best competitors. Our new algorithm is significantly faster than the competition and seems to run in close to quadratic time in practice.