抗阿特拉津基因PCR检测方法的建立与应用

阿特拉津是一种均三氮苯类除草剂,其作用机理是取代质体醌与叶绿体类囊体膜上的32kDa蛋白的结合,从而阻断光系统Ⅱ的电子传递而使光合作用受阻。32kDa蛋白由叶绿体psbA基因编码,psbA基因的突变使32kDa蛋白的第264位丝氨酸变为苷氨酸或丙氨酸,从而丧失与阿特拉津结合的能力,导致对阿特拉津除草剂的抗性。由于阿特拉津除草剂在大豆产区的广泛使用,选择和培育阿特拉津抗性     

抗阿特拉津转基因大豆植株后代的遗传分析

本试验用阿特拉津溶液涂抹、荧光诱导动力学检测、分子杂交等方法对抗阿特拉津转基因大豆植株的后代进行了鉴定,在第二代及第三代中检测到了抗性基因的存在,表明从龙葵中得到的此抗阿特拉津 psbA 基因不仅能导人大豆叶绿体基因组中获得表达,而且可以遗传到后代。     

龙葵阿特拉津抗性生物型的鉴定和阿特拉津抗性基因的克隆

通过直接施用除草剂、荧光诱导和正反杂交试验等鉴定出4种抗阿特拉津的龙葵生物型。从抗性最强的B_(13)株制备叶绿体DNA,构建限制性内切酶Bam HI片段的基因文库,并从中筛选出1个5kb Bam HI片段的克隆pSB 135,通过与探针的分子杂交,证明在pSB 135克隆的Bam HI片段中含有编码叶绿体32k蛋白质的阿特拉津抗性基因。     

龙葵抗阿特拉津生物型叶绿体基因文库的建立

用对阿特拉津(Atrazine)除草剂抗性的龙葵生物型B_(12)株系作材料,制备叶绿体DNA。B_(12)株ctDNA(叶绿体DNA)经BamHI酶解,在0.7％琼脂糖凝胶电泳上呈现24条带,其中最大的片段为18.6kb,最小的片段为1kb。用pBR322作为载体,构建B_(12)株ctDNA BamHI片段文库。通过与探针的分子杂交,从中筛选出含有编码叶绿体32kd蛋白质的阿特拉津抗性基因的克隆pSB135和含有ATP合酶α亚单位基因的克隆pSB132。     

小米psbA基因5''末端非编码区的结构特征

以小米(Setaria italica)为材料,克隆了含有叶绿体psbA基因的2.2kb EcoRⅠ片段,测定了该基因5＇末端非编码区的核苷酸序列。序列分析显示psbA基因5＇末端非编码区存在着与原核类似的启动子结构,其“-10”区的序列为TATACT,与原核生物“-10”共有基序(Consensus motif)仅相差一个核苷酸;其“-35”区的序列为TTGACA,与原核生物“-35”共有基序完全相同。另外,在“-10”区和“-35”区之间还存在着一个类似真核启动子结构的“TATATA”保守序列。这些结果表明小米psbA基因的启动子既具有原核的特征又具有真核的特征。小米psbA基因的mRNA前导序列长87bp,与高粱完全一致,而比水稻多出了“CTATTTT”7个核苷酸,比小麦、大麦和黑麦多出了“TTTT”4个核苷酸。因此推测在禾本科的C_3和C_4植物之间,psbA基因mRNA前导序列区的差异可能具有普遍性。计算机分析结果显示,以上6种植物的psbA基因mRNA前导序列区内均能形成小的茎环结构,而且这段“CTATTTT”额外序列恰好位于茎环结构中,造成了6种植物间茎环大小的差异。这一小的二级结构可能对psbA基因的表达调控有一定的影响。     

小米psbA基因5''末端非编码区的结构特征

以小米(Setaria italica)为材料,克隆了含有叶绿体psbA基因的2.2kb EcoRⅠ片段,测定了该基因5＇末端非编码区的核苷酸序列。序列分析显示psbA基因5＇末端非编码区存在着与原核类似的启动子结构,其“-10”区的序列为TATACT,与原核生物“-10”共有基序(Consensus motif)仅相差一个核苷酸;其“-35”区的序列为TTGACA,与原核生物“-35”共有基序完全相同。另外,在“-10”区和“-35”区之间还存在着一个类似真核启动子结构的“TATATA”保守序列。这些结果表明小米psbA基因的启动子既具有原核的特征又具有真核的特征。小米psbA基因的mRNA前导序列长87bp,与高粱完全一致,而比水稻多出了“CTATTTT”7个核苷酸,比小麦、大麦和黑麦多出了“TTTT”4个核苷酸。因此推测在禾本科的C_3和C_4植物之间,psbA基因mRNA前导序列区的差异可能具有普遍性。计算机分析结果显示,以上6种植物的psbA基因mRNA前导序列区内均能形成小的茎环结构,而且这段“CTATTTT”额外序列恰好位于茎环结构中,造成了6种植物间茎环大小的差异。这一小的二级结构可能对psb…     

油菜叶绿体核糖体蛋白基因rps7的克隆和序列分析(英文)

从甘蓝型油菜 (Brassicanapuscv .H1 65)叶绿体基因组克隆得到了编码核糖体蛋白的基因rps7。经序列分析得知 ,该基因编码区包含 468个核苷酸 ,编码一个分子量为 2 0 1 0 9D、由 1 55个氨基酸组成的蛋白质。该基因的核苷酸和编码的氨基酸序列与烟草对应基因的同源性皆高达 97% ;而与水稻对应基因的同源性分别为 90 %和 84%。该基因不含内含子 ,没有典型的SD序列 ,但在 5’端 - 2 5～- 2 2位发现一个与烟草psbA基因的顺式作用元件RBS2完全相同的TGAT框。与烟草和水稻的同源序列比较 ,该基因在 3’端非编码区变异较大 ,发生了多次插入和缺失。构建了包含该基因在内的一个 1 .0kbDNA的限制性内切酶图谱。所报告的基因序列已登录GenBank。     

一株阿特拉津降解菌的分离鉴定及降解特性

从农药厂废水处理池的活性污泥中分离到一株阿特拉津降解菌X-4, 根据其生理生化特性和16S rRNA基因序列相似性分析, 将其初步鉴定为节杆菌属(Arthrobacter sp.)。该菌能以阿特拉津为唯一碳氮源生长, 42 h内对100 mg/L的阿特拉津降解效果为95.7%, 降解阿特拉津的最适温度为30 °C, pH为7.0。该菌对多种重金属离子都存在抗性, 显示了其在去除阿特拉津和重金属复合污染方面的应用潜力。对其降解基因的初步研究显示, 该菌含有trzN、atzB和atzC 3个阿特拉津降解相关基因。     

高粱叶绿体psbA基因的结构特征及其5'-非编码区的调控效应

报道高粱叶绿体光系统ⅡpsbA基因的结构特征及其5'-非编码区的调控效应.比较分析表明,C4植物高粱与C3植物水稻psbA基因的核苷酸序列及其推测的氨基酸序列的一级结构之间,存在着高度的同源性.高粱psbA基因5'-非编码区,含有类似原核的-10和-35保守的启动子元件,以及类似于真核的TATA盒启动子元件,但与水稻的相比,前者比后者在mRNA的前导序列区多出了一段7 bp的额外序列,这在有关文献中尚未见报道.应用体外分析体系,证实在高粱叶绿体蛋白质提取物中存在着与psbA基因5'-非编码区特异性结合的蛋白质因子.荧光素酶表达量的检测结果是,在大肠杆菌中,带有高粱psbA基因前导序列区的表达质粒pALqs,其荧光素酶表达量,要比带有水稻相应结构的表达质粒pALqr的高出2～5倍.     

玉米大斑病抗性基因Ht1定位区域内候选序列的生物信息学分析

为获得玉米大斑病抗性基因Ht1候选序列, 文章采用生物信息学方法对与玉米大斑病抗性基因Ht1紧密连锁的分子标记umc22和umc122定位区域内候选序列进行了分析, 其中得到的63条ORF序列中有14条序列可编码蛋白质结构域。将14条核苷酸酸序列预测出的氨基酸序列与已克隆的24条抗性基因编码氨基酸序列进行Blast比对及进化树构建。结果发现, 候选序列gpm565a具有植物抗性基因编码产物的高度保守结构域, 而且与抗性基因Xal相似性高、亲缘关系近, 推测可能与抗性基因Ht1有关。其他候选序列由于不具有植物抗性基因编码产物的高度保守结构域或者相似性低、亲缘关系远等原因, 不能确定与抗性基因Ht1有关。通过对候选序列gpm565a进行二级结构及三维结构分析, 发现有大量构成蛋白质特异功能结构组件的无规则卷曲存在, 推测gpm565a可能是Ht1功能域的一部分。     

Chloroplast-coded atrazine resistance in Solanum nigrum: psbA loci from susceptible and resistant biotypes are isogenic except for a single codon change

The 32-kDa photosystem II protein of the chloroplast is thought to be a target molecule for the herbicide atrazine. The psbA gene coding for this protein was cloned from Solanum nigrum atrazine-susceptible ('S') and atrazine-resistant ('R') biotypes. The 'S' and 'R' genes are identical in nucleotide sequence except for an A to G transition, predicting a Ser to Gly change at codon 264. The same predicted amino acid change in psbA was previously shown for an Amaranthus hybridus 'S' and 'R' biotypes which had, in addition, two silent nucleotide changes between the genes (Hirschberg, J. and McIntosh, L., Science 222, 1346-1349, 1983). Occurrence of the identical, non-silent change in psbA in different 'S' and 'R' weed biotype pairs suggests a functional, herbicide-related role for this codon position.     

Growth Analysis of Atrazine-Resistant and Atrazine-Sensitive Biotypes of Chenopodium album

Seed from atrazine-sensitive and atrazine-resistant biotypesof lambsquarters (Chenopodium album L.) was sown in pots containingquartz sand. Plants were grown under a controlled environmentin a growth room. On the 15th day after planting, four randomly-selectedplants of each biotype were harvested, and both fresh and dryweights of leaves, stems, roots and whole plants, together withleaf area, were determined for each plant. This was repeatedat 5-day intervals until the 60th day after sowing. Data from the resulting replicated 2 x 10 factorial configurationwere analysed using BMDP multiple regression programmes andorthogonal polynomials to produce best fit polynomial expressionsof time-to-harvest and biotype for the natural logarithm ofeach response. From these empirical models of plant growth,predictor functions for relative growth rates, leaf area andweight ratios, specific leaf area and unit leaf rate were generated. Examination of computer-generated plots of the various growthindices suggested that time-of-harvest was the most importantfactor in determining the magnitude of the responses. However,the two biotypes exhibited different growth patterns as indicatedby the presence of a significant biotype effect or biotype xtime interaction in all cases. The faster-maturing atrazine-sensitiveplants tended to have fairly dense leaves with relatively smallarea whereas the atrazine-resistant plants initially producedsmall root systems and relatively low density leaves. Moreover,the resistant biotype, despite being lighter at 2 weeks, weighedthe same as the sensitive plants by the 60th day due to a consistentlyhigher relative growth rate. The advantages of using balancedor orthogonal configurations together with multiple regressionprocedures to derive data-based empirical models of plant growthare discussed. Limitations to the routine use of empirical modelsare also considered. Chenopodium album L., lambsquarters, atrazine resistance, growth analysis, orthogonal polynomials, multiple regression analysis     

Germination and emergence characteristics of triazine-susceptible and triazine-resistant biotypes of Solanum nigrum

1. Seedling emergence patterns of triazine-susceptible and triazine-resistant Solanum nigrum in the field were studied in Wageningen, the Netherlands. Emergence patterns were similar in the first year, but in the second year resistant seedlings emerged faster and the number of resistant seedlings was higher. To explain emergence patterns, a germination experiment was carried out.
2. Seeds from two populations with triazine-susceptible and -resistant biotypes were buried in late autumn and exhumed monthly during spring. Germination was assessed in incubators at different constant temperatures.
3. The lowest temperatures for germination of seeds from the Achterberg population ranged from 20°C on 1 February to 10°C on 1 May for the susceptible biotype, and from 15°C on 1 February to 10°C on 1 May for the resistant biotype. The lowest temperatures for germination of seeds from the Zelhem population ranged from 25°C on 1 February to 10°C on 1 May for the susceptible biotype, and from 15°C on 1 February to 10°C on 1 May for the resistant biotype. The minimum germination temperature of seeds from the resistant biotype appeared to be lower than that of the susceptible biotype.
4. Emergence patterns in the field could be explained by soil temperature and different minimum germination temperature requirements of seeds from the triazine-susceptible and -resistant biotype. This knowledge can be used to manage triazine-resistant biotypes of S. nigrum by the timing of soil cultivation.     

Effects on Photosystem II Function,Photoinhibition, and Plant Performance of the Spontaneous Mutation of Serine-264 in the Photosystem II Reaction Center D1 Protein in Triazine-Resistant Brassica napus L

Wild-type and an atrazine-resistant biotype of Brassica napus, in which a glycine is substituted for the serine-264 of the D1protein, were grown over a wide range of constant irradiances in a growth cabinet. In the absence of serine-264, the function of photosystem II (PSII) was changed as reflected by changes in chlorophyll fluorescence parameters and in photosynthetic oxygen-evolving activity. The photochemical quenching coefficient was lower, showing that a larger proportion of the primary quinone acceptor is reduced at all irradiances. At low actinic irradiances, the nonphotochemical quenching coefficient was higher, showing a greater tendency for heat emission. Decreased rates of light-limited photosynthesis (quantum yield) and lower oxygen yields per single-turnover flash were also observed. These changes were observed even when the plants had been grown under low irradiances, indicating that the changes in PSII function are direct and not consequences of photoinhibition. In spite of the lowered PSII efficiency under light-limiting conditions, the light-saturated photosynthesis rate of the atrazine-resistant mutant was similar to that of the wild type. An enhanced susceptibility to photoinhibition was observed for the atrazine-resistant biotype compared to the wild type when plants were grown under high and intermediate, but not low, irradiance. We conclude that the replacement of serine by glycine in the D1 protein has a direct effect on PSII function, which in turn causes increased photoinhibitory damage and increased rates of turnover of the D1 protein. Both the intrinsic lowering of light-limited photosynthetic efficiency and the increased sensitivity to photoinhibition probably contribute to reduced crop yields in the field, to different extents, depending on growth conditions.     

Chemical compositions and physical states of chloroplast lipids related to atrazine resistance in Conyza canadensis L.

A comparison of the chemical composition and physical states of chloroplast lipids, of atrazine-resistant (R) and sensitive (S) biotypes of Conyza canadensis L. (horseweed), in the rosetta stage showed: (1) the R biotype contains lower amounts of polar lipids in its thylakoids, as expressed on a chlorophyll basis, than the S biotype. (2) The chloroplasts of the R biotype have higher contents of monogalactosyl diacylglycerol (MGDG) and lower contents of digalactosyl diacylglycerol (DGDG) and phosphatidylglycerol (PG), than those of the S biotype. (3) The chloroplast total lipids exhibit a higher degree of unsaturation in the R biotype. This is due to a higher level of linolenic acid, and a lower level of palmitic acid in the glycolipids. The fatty acid compositions of the phospholipids, except that of PG, do not differ significantly. (4) The lipid matrix of the thylakoid membranes of the R biotype is more fluid than that of the S biotype, as measured by the fluorescence polarization technique. The results are discussed in terms of whether these differences are responsible for the herbicide resistance.     

Photoacoustic characteristics of leaves of atrazine-resistant weed mutants

The photosynthetic characteristics of leaves of atrazine-resistant and-susceptible biotypes of several weed species (Solanum nigrum, Senecio vulgaris, Epilobium ciliatum and Chenopodium album) were compared using the photoacoustic method. Analysis of the dependence of the photoacoustic signal of the modulation frequency indicated that, in Solanum, Epilobium and Senecio, the relative quantum yield of O₂ evolution (estimated by the ratio of the amplitude of the O₂ signal, A_OX, to that of the photothermal signal, A_PT) was substantially reduced in the atrazine-resistant mutant, without any changes in the O₂ diffusion characteristics of the leaves. In contrast, in Chenopodium, atrazine-resistance was associated with a concomitant change in and in the leaf diffusion parameters. This latter change suggests that the leaf internal anatomy was modified in the resistant Chenopodium. Measurements of the Emerson enhancement indicated that the reduction of observed in the atrazine-resistant mutants was caused by a marked decrease in the photochemical potential of PS II (). The study of the light intensity dependence of the A_OX/A_PT ratio showed that saturation of O₂ evolution occurred at the same light level (around 2000 mol m^-2 s^-1) in both types of plants. However, the relative maximal rate of O₂ evolution was slightly lower (-10%) in the atrazine-resistant biotype as compared to the wild type. Reduced and light-saturated rate of O₂ evolution were also measured in atrazine-resistant weed biotypes using a conventional Clark-type O₂ electrode.Abbreviations A_OX modulated O₂ evolution component of the photoacoustic signal - A_PT photothermal component of the photoacoustic signal - Atrazine 2-chloro-4-(ethylamino)-6-(isopropylamino)-s-triazine - E Emerson enhancement - PS II and PS I photosystems II and I, respectively - Q_A primary electron acceptor of PS II - Q_B secondary electron acceptor of PS II - quantum yield of O₂ evolution     

Atrazine Resistance in a Velvetleaf (Abutilon theophrasti) Biotype Due to Enhanced Glutathione S-Transferase Activity

We previously reported that a velvetleaf (Abutilon theophrasti Medic) biotype found in Maryland was resistant to atrazine because of an enhanced capacity to detoxify the herbicide via glutathione conjugation (JW Gronwald, Andersen RN, Yee C [1989] Pestic Biochem Physiol 34: 149-163). The biochemical basis for the enhanced atrazine conjugation capacity in this biotype was examined. Glutathione levels and glutathione S-transferase activity were determined in extracts from the atrazine-resistant biotype and an atrazine-susceptible or “wild-type” velvetleaf biotype. In both biotypes, the highest concentration of glutathione (approximately 500 nanomoles per gram fresh weight) was found in leaf tissue. However, no significant differences were found in glutathione levels in roots, stems, or leaves of either biotype. In both biotypes, the highest concentration of glutathione S-transferase activity measured with 1-chloro-2,4-dinitrobenzene or atrazine as substrate was in leaf tissue. Glutathione S-transferase measured with 1-chloro-2,4-dinitrobenzene as substrate was 40 and 25% greater in leaf and stem tissue, respectively, of the susceptible biotype compared to the resistant biotype. In contrast, glutathione S-transferase activity measured with atrazine as substrate was 4.4- and 3.6-fold greater in leaf and stem tissue, respectively, of the resistant biotype. Kinetic analyses of glutathione S-transferase activity in leaf extracts from the resistant and susceptible biotypes were performed with the substrates glutathione, 1-chloro-2,4-dinitrobenzene, and atrazine. There was little or no change in apparent K_m values for glutathione, atrazine, or 1-chloro-2,4-dinitrobenzene. However, the V_max for glutathione and atrazine were approximately 3-fold higher in the resistant biotype than in the susceptible biotype. In contrast, the V_max for 1-chloro-2,4-dinitrobenzene was 30% lower in the resistant biotype. Leaf glutathione S-transferase isozymes that exhibit activity with atrazine and 1-chloro-2,4-dinitrobenzene were separated by fast protein liquid (anion-exchange) chromatography. The susceptible biotype had three peaks exhibiting activity with atrazine and the resistant biotype had two. The two peaks of glutathione S-transferase activity with atrazine from the resistant biotype coeluted with two of the peaks from the susceptible biotype, but peak height was three- to fourfold greater in the resistant biotype. In both biotypes, two of the peaks that exhibit glutathione S-transferase activity with atrazine also exhibited activity with 1-chloro-2,4-dinitrobenzene, with the peak height being greater in the susceptible biotype. The results indicate that atrazine resistance in the velvetleaf biotype from Maryland is due to enhanced glutathione S-transferase activity for atrazine in leaf and stem tissue which results in an enhanced capacity to detoxify the herbicide via glutathione conjugation.     

Genetic structure of the invasive pest Bemisia tabaci: evidence of limited but persistent genetic differentiation in glasshouse populations

The geographic range of plant pests can be modified by the use of glasshouses. Bemisia tabaci, originating from warm to hot climates, has been shown to be a complex of distinct genetic groups with very limited gene flow. The genetic structure of this pest was studied in glasshouses in southern France, a region beyond the northern limit of its open-field development area in Europe. Seven microsatellite loci were scored in 22 populations sampled from various regions over 3 years. Two genetic groups were distinguished using a Bayesian clustering method and were assigned to the so-called biotypes B and Q using the gene sequence of cytochrome oxidase 1 (CO1). All but one population corresponded to biotype Q, even though only biotype B was previously reported. Despite the enclosed environment of glasshouses and their expected isolation due to low outdoor survival during the winter, only limited differentiation among biotype Q glasshouses was observed. A single sample site was notable for a decrease in expected heterozygosity and the mean number of alleles over the years. The lack of spatial genetic structure among biotype Q populations was indicative of a recent colonization event combined with large dispersal at all spatial scales. This migration pattern of biotype Q populations was further supported by additional CO1 sequences, since individuals from France, Asia and America exhibited 100% nucleotide identity. The evolution of genetic diversity observed in glasshouses in France is part of the worldwide invasion of biotype Q, which is discussed in light of human activities.     

Molecular characterization of atrazine resistance in common ragweed (Ambrosia artemisiifolia L.)

Common ragweed (Ambrosia artemisiifolia L.) is the most frequent weed in the Carpathian Basin and is spreading fast in other parts of Europe. In recent years, besides the wild type, a mutant genotype resistant to atrazine herbicides has evolved and is now widespread in many areas. The present study demonstrates that the atrazine resistance of ragweed is maternally inherited, and is caused by a point mutation inthe psb A chloroplast gene. The promoter 5′-untranslated region and the open reading frame regions of the gene were analysed, and a homology search was performed. Both the atrazine-resistant and susceptible types of cpDNA were present in atrazine-resistant plants, while the mixed presence of both genotypes in the same plant, known as heteroplasmy, was not unequivocally detectable in susceptible plants.     

Changes in the binding and inhibitory properties of urea/triazine-type herbicides upon phospholipid and galactolipid depletion in the outer monolayer of thylakoid membranes

The binding characteristics and the inhibitory power of atrazine and DCMU towards uncoupled electron flow activity were studied in acyl lipid-depleted thylakoid membranes from atrazine-susceptible and-resistant biotypes of Solanum nigrum L. For this purpose, phospholipase A₂ from Vipera russelli and the lipase from Rhizopus arrhizus were used to obtain a selective lipid class (phospholipids or galactolipids) depletion which was restricted to the outer monolayer. Neither phospholipid nor galactolipid removal affected the dissociation constant and the number of binding sites of atrazine. In contrast, the dissociation constant of DCMU was increased in phospholipid-depleted thylakoid membranes but remained unchanged after galactolipid depletion. The number of DCMU binding sites decreased significantly after both lipase treatments, but only in the resistant biotype. The inhibitory effectiveness of the herbicide was either decreased or increased (to different extents) depending on the lipid class which was removed from the membrane and on the biotype considered. These results are discussed with reference to the possible conformational changes of the 32 kDa herbicide-binding polypeptide occurring after lipase treatments.Abbreviations Atrazine 2-chloro-4-(ethylamino)-6-(isopropylamino)-s-triazine - BSA bovine serum albumin - DCMU diuron, 3-(3,4-dichlorophenyl)-1,1-dimethylurea - DGDG digalactosyldiacylglycerol - LRa lipase from Rhizopus arrhizus - MGDG monogalactosyldiacylglycerol - PC phosphatidylcholine - PG phosphatidylglycerol - PLA₂ phospholipase A₂ - R atrazine-resistant - S atrazinesusceptible