Development of simple sequence repeat markers for the plant pathogenic rust fungus,Puccinia graminis

Twenty‐four dinucleotide simple sequence repeat markers were developed for the phytopathogenic fungus, Puccinia graminis. The identified loci were polymorphic, with allelic diversity ranging from two to 11 alleles. Observed and expected levels of heterozygosity ranged from 0.000 to 0.960 and from 0.113 to 0.846, respectively. Fourteen of the loci deviated significantly from Hardy–Weinberg equilibrium. Null alleles were observed for 10 of the 24 loci with a frequency of 4–16%. A preliminary screen of other Puccinia cereal rust fungi (P. coronata, P. striiformis and P. triticina) indicated that these primer pairs are specific to P. graminis.     

Taxonomy,distribution, and status of gibbons (Hylobates) in Southern China and adjacent areas

Gibbons are small and arboreal apes restricted to southeastern tropical and southern subtropical regions in Asia. They are distributed from Assam in the northwest, eastward to south China and Vietnam, south through the Malay Peninsula to Sumatra, Borneo, Java, and the Mentawai Islands. Twenty-two genetically distinct populations of gibbons are generally recognized. Gibbons were once widely distributed in China; however, they are now primarily restricted to southern and southwestern Yunnan and Hainan Island. Their widest distribution and greatest species diversity is in Yunnan Province. Gibbons are rare in China and are now listed as a first class endangered species. Four gibbon species inhabit Yunnan Province in southern China. They areH. hoolock, H. lar, H. leucogenys, andH. concolor. There are three subspecies ofH. leucogenys: H. l. leucogenys, H. l. siki, andH. l. gabriellae. OnlyH. l. leucogenys inhabits China. Four subspecies ofH. concolor inhabit China. These areH. c. concolor, H. c. jingdongensis, H. c. furvogaster, andH. c. hainanus. The first three subspecies inhabit Yunnan andH. c. hainanus is found only on Hainan Island.H. lar yunnanensis is the subspecies ofH. lar in southern China.H. hoolock leucogenys is the subspecies ofH. hoolock in southern China.H. concolor jingdongensis, H. concolor furvogaster, andH. lar yunnanensis are all newly proposed subspecies byMa andWang (1986). The data on southern China gibbons presented here is based on an analysis of the skeletons and skins of 49 specimens held at the Kunming Institute of Zoology, Kunming, Yunnan.     

Taxonomy and phylogeny of Puccinia lagenophorae: a study using rDNA sequence data, morphological and host range features

Puccinia lagenophorae is a rust fungus originating from Australasia which has spread throughout the world. A phylogenetic analysis of taxa related to this species was performed using rDNA (LSU, ITS) sequence data. The analyses revealed a well-supported cluster including all specimens of P. lagenophorae. By evaluating morphological and sequence data, the species is taxonomically re-defined and a list of synonyms is provided. Puccinia distincta on Bellis perennis, a species recently separated from P. lagenophorae, P. saccardoi, a species on the Goodeniaceae, and P. byliana, a species so far only known from South Africa, are reduced to synonymy in P. lagenophorae, as are several other species. Our analysis indicates that P. lagenophorae is likely not derived from the northern hemisphere species P. obscura, but from a species from Australia host-alternating between Asteraceae (aecial host) and Cyperaceae/Juncaceae (telial host). Another related species, P. stylidii (on Stylidium sp., Stylidiaceae) may have been derived from the same parental species as P. lagenophorae. From ontogenetical and morphological studies, the presence of pycnia could not be confirmed in the life cycle of this species, and the width of the pedicel of teliospores at the point of attachment was found to be highly variable and not a taxonomic character. The number of known host species is approximately 150, including 41 new host plants recorded herein.     

Workshop on barcoded DNA: application to rotifer phylogeny,evolution, and systematics

DNA barcoding is the use of segments of gene sequences to assign individual organisms to species. Thus it can be used to define species and to identify specimens. Barcoding has been applied as an aid to systematics with little controversy in both monogonont and bdelloid rotifers, and also in environmental sequencing projects designed to determine the diversity of microscopic organisms. In contrast, a great deal of controversy has arisen over the creation of the Consortium for the Barcode of Life, a major initiative to barcode all the species in several major groups of animals, with the long-range goal of barcoding all species of organisms. This is a very brief review of DNA barcoding, especially as applied to rotifers, and a summary of the results of a workshop held at the 11th International Workshop on Rotifera. Guest editors: S. S. S. Sarma, R. D. Gulati, R. L. Wallace, S. Nandini, H. J. Dumont and R. Rico-Martínez Advances in Rotifer Research     

Molecular phylogeny and evolution of Caricaceae based on rDNA internal transcribed spacers and chloroplast sequence data

This study focused on clarifying phylogenetic relationships and evolution within Caricaceae. Our phylogenetic analysis based on nucleotide sequences from the ITS of the ribosomal DNA and three chloroplast fragments (matK, trnL-trnF, and psbA-trnH) included 29 taxa belonging to five genera: the neotropical genera Carica, Vasconcellea, Jarilla, and Jacaratia and the equatorial African genus Cylicomorpha. Having a relatively low mutation rate, matK, and trnL-trnF were used for estimating relationships at the generic level, while intrageneric evolution within Vasconcellea was studied with the more variable ITS and psbA-trnH sequences. Gaps, coded as binary characters, were added to the sequence alignments before performing Maximum Parsimony and Maximum Likelihood analyses. Monophyly of Caricaceae as well as phylogenetic distance between Carica and Vasconcellea species, previously belonging to the same genus, and monophyly of the resurrected genus Vasconcellea were emphasized. Within Vasconcellea, the largest genus of this family, two well-confirmed evolutionary lineages could be discerned: (1) V.xheilbornii, V. weberbaueri, V. stipulata, and V. parviflora and (2) a clade holding all other taxa of the genus. Incongruence between nuclear ITS and chloroplast psbA-trnH datasets, shown to be significantly caused by some taxa of the genus Vasconcellea, indicated that reticulate events in this genus might be more frequent than previously suspected. Moreover, intra-individual ITS sequence heterogeneity provided further evidence for the hybrid or introgressed origin of different taxa and one presumed hybrid belonging to this genus.     

镰刀菌属分类学研究历史与现状

镰刀菌是农作物和经济作物的重要病原菌,其产生的真菌毒素可危及人畜健康。近十几年来欧美的科学家在研究技术上有新的突破,使镰刀菌属种的概念在认识上有迅速的发展,尤其是那些引起谷类作物严重病害,并产生毒素的种类。在我国,从谷类粮食、饲料中检出镰刀菌毒素的现象屡有报道,我们对镰刀菌属种以及产生这些毒素的菌种(菌株)的认识还有待进一步加强。     

基于核型和分子系统学方法对中国猪尾鼠分类与分布的讨论

猪尾鼠属（Typhlomys）是啮齿类中的孑遗类群,片段化分布于我国南方和越南最北部的山地森林。前期我们基于形态和分子系统学的方法将猪尾鼠属现生类群划分为4个物种。但该分类系统仍存在争议和有待于解决的问题：一方面,有学者对大娄山猪尾鼠等是否应属于种级分类单元抱有疑问;另一方面,秦岭、南岭和广西周边的猪尾鼠种群的分类地位仍未有定论。因此,本研究采用核型分析以及分子系统学分析的方法,对我国猪尾鼠的分类及分布进行进一步梳理。本研究首次报道了中华猪尾鼠和大娄山猪尾鼠的G带核型和Ag-NORs的数目和分布,其中中华猪尾鼠2n=36,核型为14(M, SM) + 20 (A),XY (SM, A),Ag-NORs 6个;大娄山猪尾鼠2n=56,核型为2 (SM) + 52 (A),XX (SM, SM ),Ag-NORs 4个。上述核型与已报道的沙巴猪尾鼠核型（2n=38）存在显著差异,支持上述类群均为独立物种。基于线粒体Cyt b,ND2和COⅠ基因的进化关系分析,秦岭种群应属于大娄山猪尾鼠、南岭种群应属于中华猪尾鼠。而来自红河以东的云南南部的种群以及贵州南部的种群情况复杂,暗示云南、贵州和广西的喀斯特地区可能还存在未知的分类单元。     

Ceratopteris chunii and Ceratopteris chingii(Pteridaceae),two new diploid species from China,based on morphological,cytological,and molecular dataOA

Understanding how natural hybridization and polyploidizations originate in plants requires identifying potential diploid ancestors.However,cryptic plant species are widespread,particularly in Ceratopteris(Pteridaceae).Identifying Ceratopteris cryptic species with different polyploidy levels is a challenge because Ceratopteris spp.exhibit high degrees of phenotypic plasticity.Here,two new cryptic species of Ceratopteris,Ceratopteris chunii and Ceratopteris chingii,are described and illustrated.Ph...     

A new large species of gecko of the genus Hemidactylus Oken, 1817 (Reptilia: Sauria: Gekkonidae) from the Eastern Ghats,India

A new large species of gecko superficially resembling Hemidactylus maculatus Duméril & Bibron and its allied large Hemidactylus is described from Eastern Ghats. The new species, Hemidactylus kangerensis sp. nov. can be easily distinguished from members of the H. maculatus complex based on the number of femoral pores, i.e. 18–21 on each side, separated medially by 4 non-pored scales. A phylogenetic analysis based on partial sequence of mitochondrial gene cytochrome b shows that the gecko is a member of the “H. prashadi” clade and is sister to H. maculatus, from which it differs in an uncorrected pairwise sequence divergence of 10%. The discovery of a new large gecko from Eastern Ghats advocates the need for biodiversity assessment across the neglected Eastern Ghats.     

Taxonomy and phylogeny of two poorly studied genera of marine oligotrich ciliates including descriptions of two new species: Cyrtostrombidium paraboreale sp. n. and Apostrombidium orientale sp. n. (Ciliophora: Spirotrichea)

Although it is widely recognized that oligotrich ciliates are the dominant constituent of microzooplankton communities and perform key functions in energy flow and material cycling in marine microbial food webs, knowledge of their diversity is scant. In the present study, we investigate the oligotrich genera, Cyrtostrombidium and Apostrombidium, with emphasis on their morphology and evolutionary relationships. Three isolates were collected from coastal waters of northern and southern China including two new species, viz., Cyrtostrombidium paraboreale sp. n., Apostrombidium orientale sp. n., and Apostrombidium pseudokielum Xu et al., 2009. Cyrtostrombidium paraboreale sp. n. is characterized by possessing 64–98 cytopharyngeal rods and two macronuclear nodules. Apostrombidium orientale sp. n. is characterized by its somatic kinety consisting of five fragments including a horizontally orientated subterminal fragment and possessing conspicuously long dorsal cilia. Apostrombidium pseudokielum is redescribed based on the new population and a re-examination of the type material. Phylogenetic analyses were performed for the subclass Oligotrichia, incorporating SSU rRNA gene sequences of the three species investigated here. The results indicate that the genus Cyrtostrombidium is monophyletic with C. paraboreale sp. n. occupying the basal position. The genus Apostrombidium is not monophyletic as Varistrombidium kielum is nested within it.     

Taxonomy and distribution of agriculturally important plusiinae (Lepidoptera: Noctuidae) from southern Punjab,Pakistan

Taxonomic identification and classifications of insect pest genera Chrysodeixis and Ctenoplusia of the subfamily Plusiinae is very compulsory due to their phytophagous nature and potential to damage the cash as well as cereal crops. Taxonomy plays a key role in proper not only in identification and classification of the pest but also in designing a successful managing strategy. In current study, specimens of Chrysodeixis and Ctenoplusia genera were collected from different geographical areas of south Punjab, Pakistan and their diagnostic features were examined following taxanomic keys. The data of temperature, relative humidity and rainfall were also recorded during the study period. Genitalia was extracted by dissecting of the abdomen and inspected under Stereo microscope. The results revealed two new species, Chryodeixis maxus and Ctenoplusia oleraceaus, from south Punjab region in addition to previously reported species: Chrysodeixis furihatai. Suitable management of the voracious insect pest at appropriate time may help in sustaining the agriculture in Pakistan.     

Taxonomy of the Cupressaceae: Subfamilies,Tribes and Genera

Cupressaceae and Taxodiaceae have recently been merged under the earlier name Cupressaceae s.I. by many authors, as the two families are similar in a number of morpho logical characters. Sciadopitys S. et Z., which has often been treated as a morphologically isolated member of the Taxodiaceae, has recently been considered as a monotypic family, Sciadopityaceae. The Cupressaceae s.s. may be reorganized into two subfamilies. The Cu pressoideae is composed of genera with the uppermost cone-scales infertile and can be divided into four tribes: Cnpresseae, including Cupressus, X Cupressocyparis, Charnaecyparis and Fokeinia;Thujopsideae, including Thuja, Thujopsis and Platycladusl Junipereae, including Juniperus and Microbiota; and Tetraclineae, including Calocedrus and Tetraclinis. The Callitroideae is composed of genera with the uppermost cone-scales fertile and can be divided into three tribes: Actinostrobeae, including Actinostrobus, Callitris, Fitzroya and Neocallitropsis; Widdringtoneae, including Pilgerodendron, Diselma and Widdringtonia ; Libocedreae, including Libocedrus, Papuacedrus and Austrocedrus. Five geographical distribution patterns are recognized in the 21 genera of Cupressaceae. (a) One genus, X Cupressocyparis, is a natural hybrid derived from selections in England; (b) Two genera, Cupressus and Juniperus, are distributed in Africa, Europe, Asia and North America; (c) Three genera, Thuja, Chamaecyparis, and Calocedrus, are disjnnctly distributed in Eastem Asia and North America; (d) Five genera, Actinostrobus, Callitris, Libocedrus, Papuacedrus and Widdringtonia, have limited distribution; and (e) The other 10 genera, which are monotypic, are restricted to narrow areas except Plotycladus. Three centers of genera diversity are identified in the Cupressaceae, i. e Eastern Asia with nine genera, southwestern North America with five genera, and Australia and its adjacent islands in the east　with six genera, including New Zealand,. Tasmania, New Caledonia, and New Guinea. Other important areas are western Mediterranean with three genera and Chile and Argentinawith three genera.     

Two new species of the Heterobasidion insulare complex based on morphology and molecular data

Two new species of Heterobasidion, H. amyloideum and H. tibeticum, are described and illustrated from eastern Himalayas. Both species are closely related to the Heterobasidion insulare complex in morphology, but they differ in presence of cystidia and amyloid skeletal hyphae in the context. Phylogenetically, the combined RPB1 and RPB2 sequence data supports H. amyloideum and H. tibeticum as two distinct species within the H. insulare complex.     

Taxonomy and molecular phylogeny of the Asian Paraleucophenga Hendel (Diptera,Drosophilidae)

This paper reports on nine Asian species of the genus Paraleucophenga, of which four are new to science: Paraleucophenga brevipenis sp. nov. , Paraleucophenga hirtipenis sp. nov. , Paraleucophenga longiseta sp. nov. , and Paraleucophenga tanydactylia sp. nov. We also report on a new synonym, Paraleucophenga shanyinensis Chen & Toda, 1994 syn. nov. A key to all of the species examined, based on morphological data, is provided, together with a ‘molecular’ key to seven Paraleudophenga species based on DNA sequence data of the mitochondrial NADH dehydrogenase subunit 2 (ND2) gene. The phylogenetic relationships among seven Paraleucophenga species are reconstructed based on DNA sequences of the mitochondrial ND2 gene, using two Leucophenga species as outgroups. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 615–629.     

Initial results on the molecular phylogeny of the Nudibranchia (Gastropoda, Opisthobranchia) based on 18S rDNA data

This study investigated nudibranch phylogeny on the basis of 18S rDNA sequence data. 18S rDNA sequence data of 19 taxa representing the major living orders and families of the Nudibranchia were analyzed. Representatives of the Cephalaspidea, Anaspidea, Gymnomorpha, Prosobranchia, and Pulmonata were also sequenced and used as outgroups. An additional 28 gastropod sequences taken from GenBank were also included in our analyses. Phylogenetic analyses of these more than 50 gastropod taxa provide strong evidence for support of the monophyly of the Nudibranchia. The monophyly of the Doridoidea, Cladobranchia, and Aeolidoidea within the Nudibranchia are also strongly supported. Phylogenetic utility and information content of the 18S rDNA sequences for Nudibranchia, and Opisthobranchia in general, are examined using the program SplitsTree as well as phylogenetic reconstructions using distance and parsimony approaches. 0Results based on these molecular data are compared with hypotheses about nudibranch phylogeny inferred from morphological data.     

Two new species of the genus Endelus Deyrolle, 1864 from China (Coleoptera: Buprestidae)

The genus Endelus Deyrolle, 1864 belongs to the subfamily Agrilinae, tribe Aphanisticini. Two new species, E. (E.) violaceithorax sp. n. from Hainan Island and E. (E.) wangi sp. n. from Guangxi and Yunnan, are herein described and illustrated. A key to separate species of the subgenus Endelus Deyrolle, 1864 from China is provided.www.zoobank.org/urn:lsid:zoobank.org:pub:CF144204-86FB-401D-AF75-B740CCD020DC.     

The phylogeny of Gaura (Onagraceae) based on ITS, ETS, and trnL-F sequence data

Gaura (Onagraceae: Onagreae) is a small North American genus of 21 species consisting mostly of night-blooming, moth-pollinated annuals and perennials. The current infrageneric classification based on differences in habit, floral symmetry, and fruit morphology recognizes eight sections within the genus. We examine the phylogenetic relationships of all 21 species of Gaura using DNA sequence data from the internal transcribed spacer region (ITS), the external transcribed spacer region (ETS), and the plastid trnL-F region. Combined analysis of these regions indicate Gaura is monophyletic only if it includes Stenosiphon, a monotypic genus comprised of S. linifolius. Within Gaura, our studies indicate that sections Gauridium, Schizocarya, Campogaura, Stipogaura, Xenogaura, and Gaura are monophyletic, but sections Xerogaura and Pterogaura are not and should be reevaluated. In addition, molecular data provide support for the hypothesis that G. sinuata and G. drummondii arose via interspecific hybridization followed by genome doubling; their influence on phylogenetic reconstruction is discussed.